Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Reverse (-)

19175609 .. 19180195

Gene Structure 4587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGCCTACAGTAAGCGTGAAGTGGCAAAAGAAAGTGTTGGATGGTATCGAGATTGACGTTAGTCTGCCTCCTTATGTTTTCAAGGCTCAGTTGTATGATTTGACTGGAGTTCCACCAGAACGCCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGATGATGGAGATTGGGCTGCTATTGGTGTGAAAGATGGTCAAAAATTGATGATGATGGGAACTGCTGATGAGATAGTGAAAGCTCCTGAGAAGGCCATTGTTTTTGCAGAGGATCTACCTGAAGAAGCGCTAGCCACTAATCTGGGTTACAGTGCTGGCCTTGTCAATCTTGGCAACACGTGTTACATGAACTCCACGGTGCAGTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTATCCAATTACTCACTTGCTGCCCGAAGCAATGATGTTGACCAGACTTCTCACATGCTCACAGTTGCCACACGTGAGTTATTTGGTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTTCACAGTTCTGGATGGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGCACATGCAGCAGGATGCTGAAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCCTAAAAGCACCAACTTCCAGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTGGTGTCAATCTCCAGAGCAGGTTGCATTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTCATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGGGAACTTGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTCTACGTCAAGGAGTCACTTATAGATTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGGTTTTTCTGGAAAAGGGAGAGTAATCAGAAAGCAAAGATCCTCAGGAAAGTGGATTACCCGCTGGTGTTGGATATATTTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGAAACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAGGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGCTGTGTTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAGAGAGTGGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

482

Amino Acids

53.7

Weight (kDa)

5.82

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	65 - 436	5.9e-59	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	65 - 408	1.1e-10	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
AccII	CGCG	1 cut(s)	1362
AciI	CCGC	3 cut(s)	928, 989, 1432
AclWI	GGATC	3 cut(s)	276, 961, 1032
AcoI	YGGCCR	1 cut(s)	856
AcuI	CTGAAG	2 cut(s)	297, 615
AcvI	CACGTG	2 cut(s)	336, 467
AcyI	GRCGYC	1 cut(s)	1151
AfaI	GTAC	5 cut(s)	862, 908, 1201, 1412, 1424
AfeI	AGCGCT	1 cut(s)	285
AfiI	CCNNNNNNNGG	3 cut(s)	854, 903, 1196
AflIII	ACRYGT	3 cut(s)	333, 335, 464
AgsI	TTSAA	5 cut(s)	82, 385, 836, 1094, 1331
AhlI	ACTAGT	1 cut(s)	1097
AluBI	AGCT	7 cut(s)	239, 484, 680, 738, 1046, 1084, 1381
AluI	AGCT	7 cut(s)	239, 484, 680, 738, 1046, 1084, 1381
Alw26I	GTCTC	3 cut(s)	152, 737, 1444
AlwI	GGATC	3 cut(s)	276, 961, 1032
AlwNI	CAGNNNCTG	2 cut(s)	752, 1283
Ama87I	CYCGRG	1 cut(s)	1348
Aor51HI	AGCGCT	1 cut(s)	285
AoxI	GGCC	3 cut(s)	249, 313, 856
ApeKI	GCWGC	3 cut(s)	173, 413, 583
AspLEI	GCGC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	491, 1406
AsuNHI	GCTAGC	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	1348
AxyI	CCTNAGG	1 cut(s)	971
BbrPI	CACGTG	2 cut(s)	336, 467
BbsI	GAAGAC	2 cut(s)	1082, 1374
BbvI	GCAGC	3 cut(s)	160, 400, 595
BccI	CCATC	5 cut(s)	35, 155, 185, 205, 520
BceAI	ACGGC	1 cut(s)	843
BciVI	GTATCC	1 cut(s)	555
BcoDI	GTCTC	3 cut(s)	152, 737, 1444
BcuI	ACTAGT	1 cut(s)	1097
BfaI	CTAG	2 cut(s)	287, 1098
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	696
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	3 cut(s)	174, 414, 584
BlsI	GCNGC	3 cut(s)	175, 415, 585
BmeT110I	CYCGRG	1 cut(s)	1348
BmsI	GCATC	3 cut(s)	580, 658, 1132
BmtI	GCTAGC	1 cut(s)	290
BoxI	GACNNNNGTC	2 cut(s)	60, 1284
BpiI	GAAGAC	2 cut(s)	1082, 1374
BpmI	CTGGAG	3 cut(s)	126, 683, 1407
BsaAI	YACGTR	2 cut(s)	336, 467
BsaHI	GRCGYC	1 cut(s)	1151
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	351, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	3 cut(s)	854, 903, 1196
Bse1I	ACTGG	3 cut(s)	109, 1044, 1234
Bse21I	CCTNAGG	1 cut(s)	971
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	351, 902
BseGI	GGATG	5 cut(s)	46, 163, 531, 595, 1175
BseLI	CCNNNNNNNGG	3 cut(s)	854, 903, 1196
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	8 cut(s)	101, 234, 563, 644, 753, 985, 1011, 1200
BseNI	ACTGG	3 cut(s)	109, 1044, 1234
BseRI	GAGGAG	3 cut(s)	1038, 1082, 1404
BseXI	GCAGC	3 cut(s)	160, 400, 595
BsgI	GTGCAG	3 cut(s)	377, 849, 1296
Bsh1236I	CGCG	1 cut(s)	1362
BshFI	GGCC	3 cut(s)	251, 315, 858
BsiHKCI	CYCGRG	1 cut(s)	1348
BslFI	GGGAC	2 cut(s)	359, 619
BslI	CCNNNNNNNGG	3 cut(s)	854, 903, 1196
BsmAI	GTCTC	3 cut(s)	152, 737, 1444
BsmBI	CGTCTC	1 cut(s)	1444
BsmFI	GGGAC	2 cut(s)	359, 619
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	251, 315, 858
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	1348
Bsp1407I	TGTACA	1 cut(s)	1422
Bsp143I	GATC	4 cut(s)	129, 268, 966, 1024
BspACI	CCGC	3 cut(s)	928, 989, 1432
BspANI	GGCC	3 cut(s)	251, 315, 858
BspCNI	CTCAG	8 cut(s)	100, 235, 562, 643, 752, 984, 1012, 1201
BspFNI	CGCG	1 cut(s)	1362
BspMI	ACCTGC	1 cut(s)	696
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	3 cut(s)	276, 961, 1032
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	1422
BsrI	ACTGG	3 cut(s)	109, 1044, 1234
BssECI	CCNNGG	2 cut(s)	351, 902
BssMI	GATC	4 cut(s)	129, 268, 966, 1024
BssNI	GRCGYC	1 cut(s)	1151
BssT1I	CCWWGG	1 cut(s)	902
Bst4CI	ACNGT	9 cut(s)	10, 308, 355, 457, 519, 615, 916, 1124, 1183
BstACI	GRCGYC	1 cut(s)	1151
BstAUI	TGTACA	1 cut(s)	1422
BstBAI	YACGTR	2 cut(s)	336, 467
BstC8I	GCNNGC	4 cut(s)	288, 313, 1355, 1432
BstDSI	CCRYGG	1 cut(s)	351
BstENI	CCTNNNNNAGG	1 cut(s)	901
BstF5I	GGATG	5 cut(s)	46, 163, 531, 595, 1175
BstFNI	CGCG	1 cut(s)	1362
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	4 cut(s)	132, 271, 969, 1027
BstMAI	GTCTC	3 cut(s)	152, 737, 1444
BstMBI	GATC	4 cut(s)	129, 268, 966, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	583, 677, 735, 1359
BstNSI	RCATGY	3 cut(s)	451, 583, 1357
BstPAI	GACNNNNGTC	2 cut(s)	60, 1284
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	1362
BstV1I	GCAGC	3 cut(s)	160, 400, 595
BstV2I	GAAGAC	2 cut(s)	1082, 1374
BstX2I	RGATCY	3 cut(s)	268, 966, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	3 cut(s)	268, 966, 1024
Bsu36I	CCTNAGG	1 cut(s)	971
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	251, 315, 858
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	5 cut(s)	46, 163, 531, 595, 1175
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	3 cut(s)	313, 365, 1129
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	4 cut(s)	288, 313, 1355, 1432
CaiI	CAGNNNCTG	2 cut(s)	752, 1283
CfoI	GCGC	1 cut(s)	286
CseI	GACGC	1 cut(s)	1140
Csp6I	GTAC	5 cut(s)	861, 907, 1200, 1411, 1423
CviQI	GTAC	5 cut(s)	861, 907, 1200, 1411, 1423
DpnI	GATC	4 cut(s)	131, 270, 968, 1026
DpnII	GATC	4 cut(s)	129, 268, 966, 1024
EaeI	YGGCCR	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	902
Eco31I	GGTCTC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	297, 615
Eco72I	CACGTG	2 cut(s)	336, 467
Eco81I	CCTNAGG	1 cut(s)	971
Eco88I	CYCGRG	1 cut(s)	1348
EcoNI	CCTNNNNNAGG	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	902
Esp3I	CGTCTC	1 cut(s)	1444
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	2 cut(s)	359, 619
FauI	CCCGC	2 cut(s)	996, 1439
FauNDI	CATATG	1 cut(s)	1404
Fnu4HI	GCNGC	3 cut(s)	174, 414, 584
FokI	GGATG	5 cut(s)	53, 170, 538, 602, 1162
Fsp4HI	GCNGC	3 cut(s)	174, 414, 584
FspBI	CTAG	2 cut(s)	287, 1098
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	174, 414, 584
GsuI	CTGGAG	3 cut(s)	126, 683, 1407
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	251, 315, 858
HgaI	GACGC	1 cut(s)	1140
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	1151
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	2 cut(s)	433, 1257
HindII	GTYRAC	2 cut(s)	433, 1257
HindIII	AAGCTT	1 cut(s)	1082
HinfI	GANTC	7 cut(s)	749, 881, 893, 1172, 1233, 1280, 1327
HphI	GGTGA	2 cut(s)	491, 1406
Hpy166II	GTNNAC	4 cut(s)	433, 790, 1186, 1257
Hpy188I	TCNGA	5 cut(s)	742, 957, 1021, 1032, 1210
Hpy188III	TCNNGA	8 cut(s)	49, 242, 523, 700, 719, 937, 973, 1386
Hpy8I	GTNNAC	4 cut(s)	433, 790, 1186, 1257
HpyAV	CCTTC	7 cut(s)	241, 522, 653, 797, 1067, 1190, 1207
HpyCH4III	ACNGT	9 cut(s)	10, 308, 355, 457, 519, 615, 916, 1124, 1183
HpyCH4IV	ACGT	4 cut(s)	57, 335, 466, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	583, 677, 735, 1359
HpySE526I	ACGT	4 cut(s)	57, 335, 466, 873
Hsp92I	GRCGYC	1 cut(s)	1151
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	129, 268, 966, 1024
LmnI	GCTCC	2 cut(s)	244, 1051
Lsp1109I	GCAGC	3 cut(s)	160, 400, 595
LweI	GCATC	3 cut(s)	580, 658, 1132
MaeI	CTAG	2 cut(s)	287, 1098
MaeII	ACGT	4 cut(s)	57, 335, 466, 873
MaeIII	GTNAC	3 cut(s)	302, 338, 882
MalI	GATC	4 cut(s)	131, 270, 968, 1026
MboI	GATC	4 cut(s)	129, 268, 966, 1024
MboII	GAAGA	9 cut(s)	290, 608, 743, 1019, 1045, 1082, 1197, 1376, 1379
MflI	RGATCY	3 cut(s)	268, 966, 1024
MluCI	AATT	2 cut(s)	200, 400
MlyI	GAGTC	2 cut(s)	890, 1274
MmeI	TCCRAC	3 cut(s)	18, 584, 978
MseI	TTAA	3 cut(s)	152, 365, 809
MslI	CAYNNNNRTG	2 cut(s)	798, 1418
MspA1I	CMGCKG	1 cut(s)	991
Mva1269I	GAATGC	1 cut(s)	579
MvnI	CGCG	1 cut(s)	1362
MwoI	GCNNNNNNNGC	4 cut(s)	583, 677, 735, 1359
NdeI	CATATG	1 cut(s)	1404
NdeII	GATC	4 cut(s)	129, 268, 966, 1024
NheI	GCTAGC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	882
NspI	RCATGY	3 cut(s)	451, 583, 1357
PaeI	GCATGC	1 cut(s)	1357
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	5 cut(s)	749, 893, 1172, 1233, 1327
PflFI	GACNNNGTC	1 cut(s)	1244
PkrI	GCNGC	3 cut(s)	175, 415, 585
PleI	GAGTC	2 cut(s)	889, 1274
PmaCI	CACGTG	2 cut(s)	336, 467
PmlI	CACGTG	2 cut(s)	336, 467
PpsI	GAGTC	2 cut(s)	889, 1274
Ppu21I	YACGTR	2 cut(s)	336, 467
PshAI	GACNNNNGTC	2 cut(s)	60, 1284
PspCI	CACGTG	2 cut(s)	336, 467
PstNI	CAGNNNCTG	2 cut(s)	752, 1283
PsuI	RGATCY	3 cut(s)	268, 966, 1024
PsyI	GACNNNGTC	1 cut(s)	1244
RsaI	GTAC	5 cut(s)	862, 908, 1201, 1412, 1424
RsaNI	GTAC	5 cut(s)	861, 907, 1200, 1411, 1423
RseI	CAYNNNNRTG	2 cut(s)	798, 1418
SaqAI	TTAA	3 cut(s)	152, 365, 809
SatI	GCNGC	3 cut(s)	174, 414, 584
Sau3AI	GATC	4 cut(s)	129, 268, 966, 1024
SchI	GAGTC	2 cut(s)	890, 1274
SfaNI	GCATC	3 cut(s)	580, 658, 1132
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	798, 1418
SpeI	ACTAGT	1 cut(s)	1097
SphI	GCATGC	1 cut(s)	1357
Sse9I	AATT	2 cut(s)	200, 400
SsiI	CCGC	3 cut(s)	928, 989, 1432
SspMI	CTAG	2 cut(s)	287, 1098
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	9 cut(s)	10, 308, 355, 457, 519, 615, 916, 1124, 1183
TaiI	ACGT	4 cut(s)	60, 338, 469, 876
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	200, 400
TatI	WGTACW	1 cut(s)	1422
TfiI	GAWTC	5 cut(s)	749, 893, 1172, 1233, 1327
Tru1I	TTAA	3 cut(s)	152, 365, 809
Tru9I	TTAA	3 cut(s)	152, 365, 809
TscAI	CASTG	3 cut(s)	313, 365, 1129
TseFI	GTSAC	1 cut(s)	882
TseI	GCWGC	3 cut(s)	173, 413, 583
Tsp45I	GTSAC	1 cut(s)	882
TspDTI	ATGAA	3 cut(s)	359, 798, 816
TspRI	CASTG	3 cut(s)	313, 365, 1129
Tth111I	GACNNNGTC	1 cut(s)	1244
XagI	CCTNNNNNAGG	1 cut(s)	901
XceI	RCATGY	3 cut(s)	451, 583, 1357
XspI	CTAG	2 cut(s)	287, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.