Prupe.3G052400_v2.0.a1

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
3702648 .. 3708648
6001 bp
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UTR
Exon/CDS
Intron
Prupe.3G052400.2

Sequence Viewer

Length: 1437 bp
ATGATTACCGTTAGTGTAAAATGGCAAAAGGAGATGTTTAAAGCTGTGGAAATTGACACTACTCAGCCCCCTTATGTATTCAAATGCCAATTATACGACTTAACCGGGGTACCTCCTGAAAGACAGAAGATAATGGTTAAAGGTGGTTTATTGAAGGATGATGCAGAGTGGTCGACATTAGGAGTAAAAGAGGGTCAAAAATTGATGATGATGGGGACAGCAGATGAGATTGTCAAGGCTCCAGAGAAGGGTCCTGTTTTTGTGGAAGATCTCCCTGAAGAAGAACAAGCTATTAACTTGGGTCATAGTGCTGGTCTATTTAATTTAGGAAACACCTGTTATATGAACTCCACCGTACAATGTCTGCATTCAGTTCCAGAGTTGAAGTCAGCTTTGATCAAGTATTCACATTCTGGAAGAAGCAATGATGTGGATCAGACTTCTCATATGTTGACTATTGCAACTCGTGATTTATTTGGTGAACTGGATAAAAGTGTCAAGGCTGTGGCACCCATGCAATTTTGGATGGTATTGCGTAAAAAGTATCCTCAATTTGGTCAGCTGCATAATAATACCTTCATGCAACAGGATGCTGAAGAATGTTGGACGCAGCTTTTGTACACCCTTTCTCAGTCTCTAAGATCATCGGGTTCTAGTGAAAGTCCAGACACAGTTAAGGCCCTTTTCGGTGTTGAACTTGTTAGCAGGGTGCACTGCGTAGAAAGTGGGGAAGAAAGCTCGGAAACAGAATCAGTGTATTCCCTTAAATGCCACATATCACATGAGGTGAACCATTTGCACGAAGGGTTAAAACATGCTTTAAAATCGGAATTGGAAAAAAATTCTCCTTCTTTGGGGCGTAGTGCGATCTACCTGAAGGAGTCTCGTATCAATGGCCTTCCAAGGTACTTGACCATTCAGTTTGTCCGTTTTTTCTGGAAGAGGGAATCAAATCAGAAGGCCAAGATTTTGCGGAAAGTGGATTACCCTTTGCAATTGGATATTTTTGATCTCTGTTCAGATGATCTTCGCAAAAGATTGGAAGCTCCTCGCCGGACTCTGAGAGATGAGGAAGGTAAAAAACTTGGTTTGAAATCCAATGAAAAGAGCTCTGGTTCAAAAGACAATGATATCAAGATGTCTGATGTGGAGGGATCCTCAAATGGAAGTGGAGAAGCATCTAATCCTACGCCCGATGAAGCTGCAGGTGCCATGACTGGAATTTATGATTTGGTTGCTGTGCTGACACACAAGGGTCGTAGTGCCGACTCAGGCCATTATGTTGCCTGGGTCAAGCAAGAAAGTGGGAAATGGATCGAGTATGACGATGACAATCCCATCCCACAGCGGGAGGAAGACATCACCAAACTCTCTGGAGGAGGTGATTGGCATATGGCCTATATTTGCATGTACAAGGCCCGTACTGTCCCTATGTGA

Protein Analysis

479

Amino Acids

53.76

Weight (kDa)

5.93

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1196
Acc36I ACCTGC 1 cut(s) 1196
Acc65I GGTACC 1 cut(s) 109
AccB1I GGYRCC 3 cut(s) 109, 508, 1208
AccI GTMKAC 1 cut(s) 173
AciI CCGC 2 cut(s) 973, 1348
AclWI GGATC 4 cut(s) 441, 1149, 1162, 1322
AcsI RAATTY 2 cut(s) 841, 1221
AcuI CTGAAG 3 cut(s) 297, 615, 896
AfaI GTAC 6 cut(s) 111, 357, 620, 908, 1412, 1423
AfiI CCNNNNNNNGG 4 cut(s) 248, 554, 854, 1348
AgsI TTSAA 6 cut(s) 82, 154, 385, 695, 1093, 1119
AjnI CCWGG 1 cut(s) 1286
AluBI AGCT 9 cut(s) 44, 290, 392, 562, 613, 738, 1046, 1110, 1202
AluI AGCT 9 cut(s) 44, 290, 392, 562, 613, 738, 1046, 1110, 1202
Alw21I GWGCWC 2 cut(s) 714, 1112
Alw26I GTCTC 2 cut(s) 639, 888
Alw44I GTGCAC 1 cut(s) 710
AlwI GGATC 4 cut(s) 441, 1149, 1162, 1322
AoxI GGCC 6 cut(s) 678, 895, 960, 1273, 1395, 1416
ApaLI GTGCAC 1 cut(s) 710
ApeKI GCWGC 3 cut(s) 562, 610, 1202
ApoI RAATTY 2 cut(s) 841, 1221
ArsI GACNNNNNNTTYG 2 cut(s) 598, 630
Asp718I GGTACC 1 cut(s) 109
AspS9I GGNCC 3 cut(s) 251, 679, 1417
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 4 cut(s) 491, 799, 1354, 1394
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 714
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BamHI GGATCC 1 cut(s) 1154
BanI GGYRCC 3 cut(s) 109, 508, 1208
BanII GRGCYC 1 cut(s) 1112
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 1362
Bbv12I GWGCWC 2 cut(s) 714, 1112
BbvI GCAGC 3 cut(s) 549, 622, 1189
BccI CCATC 3 cut(s) 205, 520, 1346
BcgI CGANNNNNNTGC 4 cut(s) 153, 187, 1184, 1218
BciT130I CCWGG 1 cut(s) 1288
BciVI GTATCC 1 cut(s) 555
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 639, 888
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 1203
BfuAI ACCTGC 1 cut(s) 1196
BfuI GTATCC 1 cut(s) 555
BglII AGATCT 1 cut(s) 268
BisI GCNGC 3 cut(s) 563, 611, 1203
BlsI GCNGC 3 cut(s) 564, 612, 1204
Bme1390I CCNGG 2 cut(s) 106, 1288
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 251, 679, 1417
BmiI GGNNCC 6 cut(s) 111, 240, 252, 510, 1156, 1210
BmrFI CCNGG 2 cut(s) 106, 1288
BmsI GCATC 3 cut(s) 151, 580, 1187
BpiI GAAGAC 1 cut(s) 1362
BplI GAGNNNNNCTC 2 cut(s) 1142, 1174
BpmI CTGGAG 2 cut(s) 225, 1395
BpuMI CCSGG 1 cut(s) 106
BsaBI GATNNNNATC 2 cut(s) 432, 1332
BsaJI CCNNGG 3 cut(s) 105, 902, 1287
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 554, 854, 1348
Bse1I ACTGG 2 cut(s) 489, 1222
Bse3DI GCAATG 1 cut(s) 430
Bse8I GATNNNNATC 2 cut(s) 432, 1332
BseBI CCWGG 1 cut(s) 1288
BseDI CCNNGG 3 cut(s) 105, 902, 1287
BseGI GGATG 4 cut(s) 163, 531, 595, 1338
BseJI GATNNNNATC 2 cut(s) 432, 1332
BseLI CCNNNNNNNGG 4 cut(s) 248, 554, 854, 1348
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 4 cut(s) 77, 644, 1052, 1284
BseNI ACTGG 2 cut(s) 489, 1222
BseRI GAGGAG 2 cut(s) 1038, 1392
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 3 cut(s) 549, 622, 1189
BshFI GGCC 6 cut(s) 680, 897, 962, 1275, 1397, 1418
BshNI GGYRCC 3 cut(s) 109, 508, 1208
BsiHKAI GWGCWC 2 cut(s) 714, 1112
BsiSI CCGG 2 cut(s) 105, 1054
BslFI GGGAC 2 cut(s) 229, 1412
BslI CCNNNNNNNGG 4 cut(s) 248, 554, 854, 1348
BsmAI GTCTC 2 cut(s) 639, 888
BsmFI GGGAC 2 cut(s) 229, 1412
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 6 cut(s) 680, 897, 962, 1275, 1397, 1418
Bsp1286I GDGCHC 2 cut(s) 714, 1112
Bsp1407I TGTACA 2 cut(s) 618, 1410
Bsp143I GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
BspACI CCGC 2 cut(s) 973, 1348
BspANI GGCC 6 cut(s) 680, 897, 962, 1275, 1397, 1418
BspCNI CTCAG 4 cut(s) 76, 643, 1053, 1283
BspLI GGNNCC 6 cut(s) 111, 240, 252, 510, 1156, 1210
BspMAI CTGCAG 1 cut(s) 1207
BspMI ACCTGC 1 cut(s) 1196
BspPI GGATC 4 cut(s) 441, 1149, 1162, 1322
BspT107I GGYRCC 3 cut(s) 109, 508, 1208
BsrDI GCAATG 1 cut(s) 430
BsrGI TGTACA 2 cut(s) 618, 1410
BsrI ACTGG 2 cut(s) 489, 1222
BssECI CCNNGG 3 cut(s) 105, 902, 1287
BssMI GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 902
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 1288
Bst4CI ACNGT 4 cut(s) 10, 355, 673, 1426
Bst6I CTCTTC 1 cut(s) 935
BstAUI TGTACA 2 cut(s) 618, 1410
BstDEI CTNAG 5 cut(s) 63, 630, 638, 1061, 1270
BstF5I GGATG 4 cut(s) 163, 531, 595, 1338
BstKTI GATC 9 cut(s) 271, 399, 436, 644, 870, 1012, 1027, 1157, 1317
BstMAI GTCTC 2 cut(s) 639, 888
BstMBI GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
BstMWI GCNNNNNNNGC 1 cut(s) 1208
BstNI CCWGG 1 cut(s) 1288
BstNSI RCATGY 2 cut(s) 818, 1411
BstSCI CCNGG 2 cut(s) 104, 1286
BstSFI CTRYAG 1 cut(s) 1203
BstSLI GKGCMC 1 cut(s) 714
BstV1I GCAGC 3 cut(s) 549, 622, 1189
BstV2I GAAGAC 1 cut(s) 1362
BstX2I RGATCY 2 cut(s) 268, 1154
BstYI RGATCY 2 cut(s) 268, 1154
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 6 cut(s) 680, 897, 962, 1275, 1397, 1418
BtsCI GGATG 4 cut(s) 163, 531, 595, 1338
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 712, 759
BveI ACCTGC 1 cut(s) 1196
Cfr13I GGNCC 3 cut(s) 251, 679, 1417
CseI GACGC 1 cut(s) 616
Csp6I GTAC 6 cut(s) 110, 356, 619, 907, 1411, 1422
CviAII CATG 6 cut(s) 514, 580, 782, 815, 1213, 1408
CviQI GTAC 6 cut(s) 110, 356, 619, 907, 1411, 1422
DdeI CTNAG 5 cut(s) 63, 630, 638, 1061, 1270
DpnI GATC 9 cut(s) 270, 398, 435, 643, 869, 1011, 1026, 1156, 1316
DpnII GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
DraI TTTAAA 2 cut(s) 40, 822
Eam1104I CTCTTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 1110
Eco130I CCWWGG 1 cut(s) 902
Eco24I GRGCYC 1 cut(s) 1112
Eco32I GATATC 1 cut(s) 1132
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 1110
Eco57I CTGAAG 3 cut(s) 297, 615, 896
EcoICRI GAGCTC 1 cut(s) 1110
EcoO109I RGGNCCY 2 cut(s) 251, 679
EcoRII CCWGG 1 cut(s) 1286
EcoRV GATATC 1 cut(s) 1132
EcoT14I CCWWGG 1 cut(s) 902
EcoT38I GRGCYC 1 cut(s) 1112
ErhI CCWWGG 1 cut(s) 902
FaeI CATG 6 cut(s) 517, 583, 785, 818, 1216, 1411
FaqI GGGAC 2 cut(s) 229, 1412
FatI CATG 6 cut(s) 513, 579, 781, 814, 1212, 1407
FauI CCCGC 1 cut(s) 1341
FauNDI CATATG 2 cut(s) 447, 1392
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 563, 611, 1203
FokI GGATG 4 cut(s) 170, 538, 602, 1325
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 3 cut(s) 563, 611, 1203
FspBI CTAG 1 cut(s) 654
GluI GCNGC 3 cut(s) 563, 611, 1203
GsuI CTGGAG 2 cut(s) 225, 1395
HaeIII GGCC 6 cut(s) 680, 897, 962, 1275, 1397, 1418
HapII CCGG 2 cut(s) 105, 1054
HgaI GACGC 1 cut(s) 616
Hin1II CATG 6 cut(s) 517, 583, 785, 818, 1216, 1411
HincII GTYRAC 2 cut(s) 174, 453
HindII GTYRAC 2 cut(s) 174, 453
HinfI GANTC 5 cut(s) 749, 881, 947, 1057, 1268
HpaII CCGG 2 cut(s) 105, 1054
HphI GGTGA 4 cut(s) 491, 799, 1354, 1394
Hpy166II GTNNAC 6 cut(s) 174, 453, 482, 621, 712, 790
Hpy188I TCNGA 7 cut(s) 438, 742, 829, 957, 1021, 1062, 1144
Hpy188III TCNNGA 9 cut(s) 116, 242, 377, 414, 467, 665, 937, 1135, 1374
Hpy8I GTNNAC 6 cut(s) 174, 453, 482, 621, 712, 790
HpyAV CCTTC 9 cut(s) 148, 241, 586, 797, 858, 871, 908, 952, 1067
HpyCH4III ACNGT 4 cut(s) 10, 355, 673, 1426
HpyF10VI GCNNNNNNNGC 1 cut(s) 1208
HpyF3I CTNAG 5 cut(s) 63, 630, 638, 1061, 1270
Hsp92II CATG 6 cut(s) 517, 583, 785, 818, 1216, 1411
KpnI GGTACC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
LmnI GCTCC 2 cut(s) 244, 1051
Lsp1109I GCAGC 3 cut(s) 549, 622, 1189
LweI GCATC 3 cut(s) 151, 580, 1187
MaeI CTAG 1 cut(s) 654
MalI GATC 9 cut(s) 270, 398, 435, 643, 869, 1011, 1026, 1156, 1316
MboI GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
MfeI CAATTG 1 cut(s) 995
MflI RGATCY 2 cut(s) 268, 1154
MhlI GDGCHC 2 cut(s) 714, 1112
MlyI GAGTC 3 cut(s) 890, 1051, 1262
MmeI TCCRAC 1 cut(s) 584
MseI TTAA 9 cut(s) 39, 101, 138, 294, 321, 675, 765, 809, 821
MspA1I CMGCKG 2 cut(s) 562, 1348
MspI CCGG 2 cut(s) 105, 1054
MspR9I CCNGG 2 cut(s) 106, 1288
MunI CAATTG 1 cut(s) 995
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 1288
MwoI GCNNNNNNNGC 1 cut(s) 1208
NciI CCSGG 1 cut(s) 106
NdeI CATATG 2 cut(s) 447, 1392
NdeII GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
NlaIII CATG 6 cut(s) 517, 583, 785, 818, 1216, 1411
NlaIV GGNNCC 6 cut(s) 111, 240, 252, 510, 1156, 1210
NspI RCATGY 2 cut(s) 818, 1411
PaqCI CACCTGC 1 cut(s) 1196
PcsI WCGNNNNNNNCGW 1 cut(s) 1323
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 749, 947
PkrI GCNGC 3 cut(s) 564, 612, 1204
PleI GAGTC 3 cut(s) 889, 1051, 1262
PpsI GAGTC 3 cut(s) 889, 1051, 1262
PpuMI RGGWCCY 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 1112
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 1286
PspGI CCWGG 1 cut(s) 1286
PspN4I GGNNCC 6 cut(s) 111, 240, 252, 510, 1156, 1210
PspPI GGNCC 3 cut(s) 251, 679, 1417
PspPPI RGGWCCY 1 cut(s) 251
PstI CTGCAG 1 cut(s) 1207
PsuI RGATCY 2 cut(s) 268, 1154
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 6 cut(s) 111, 357, 620, 908, 1412, 1423
RsaNI GTAC 6 cut(s) 110, 356, 619, 907, 1411, 1422
SacI GAGCTC 1 cut(s) 1112
SalI GTCGAC 1 cut(s) 172
SaqAI TTAA 9 cut(s) 39, 101, 138, 294, 321, 675, 765, 809, 821
SatI GCNGC 3 cut(s) 563, 611, 1203
Sau3AI GATC 9 cut(s) 268, 396, 433, 641, 867, 1009, 1024, 1154, 1314
Sau96I GGNCC 3 cut(s) 251, 679, 1417
SchI GAGTC 3 cut(s) 890, 1051, 1262
ScrFI CCNGG 2 cut(s) 106, 1288
SduI GDGCHC 2 cut(s) 714, 1112
SfaNI GCATC 3 cut(s) 151, 580, 1187
SfcI CTRYAG 1 cut(s) 1203
SinI GGWCC 1 cut(s) 251
SsiI CCGC 2 cut(s) 973, 1348
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 1 cut(s) 1112
StyD4I CCNGG 2 cut(s) 104, 1286
StyI CCWWGG 1 cut(s) 902
TaaI ACNGT 4 cut(s) 10, 355, 673, 1426
TaqI TCGA 2 cut(s) 173, 1317
TatI WGTACW 2 cut(s) 618, 1410
TfiI GAWTC 2 cut(s) 749, 947
Tru1I TTAA 9 cut(s) 39, 101, 138, 294, 321, 675, 765, 809, 821
Tru9I TTAA 9 cut(s) 39, 101, 138, 294, 321, 675, 765, 809, 821
TscAI CASTG 2 cut(s) 719, 759
TseI GCWGC 3 cut(s) 562, 610, 1202
TspDTI ATGAA 4 cut(s) 359, 568, 1116, 1212
TspGWI ACGGA 1 cut(s) 917
TspRI CASTG 2 cut(s) 719, 759
VneI GTGCAC 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 841, 1221
XceI RCATGY 2 cut(s) 818, 1411
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.