Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Forward (+)

64596880 .. 64605574

Gene Structure 8695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGTTAAAGGTGGTTTGTTGAAGGATGATGCAGATTGGTCGACATTAGGAGTAAAAGAGGGTCAAAAATTGATGATGATGGGGACCGCAGATGAGATTGTCAAGGCTCCAGAGAAGGGTACTGTTTTTGTAGAAGATCTACCAGAAGAAGAACAAGCTATCAACTTGGGTCATAGTGCTGGTCTATTTAATTTGGGAAACACCTGTTATATGAACTCCACTTTACAATGTCTGCATTCTGTTCCTGAGTTGAAGTCAGCTTTGATCAACTACTCACATTCAGGAAGAAGCAATGACGTGGATCAGACTTCTCACACATTGACTGTTGCAACTCGTGATTTATTCAATGAACTGGACAAAAGTGTCAAGCCTGTGGCACCCATGCAATTTTGGATGGTGCTGCGTAAAAAGTATCCTCAATTTGGTCAGCTCCATAACAATTCCTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACCCTTTCTCAGTCTTTGAGATCTTCTGGTTCAAGTGAGAATCCAGATACAGTGAAGGCCCTTTTTGGTGTCGACCTAGTTAGCAGGGTGCACTGCGCAGAAAGTGGGGAAGAAAGCTCAGAAACAGAGTCAGTTCATTCCCTTAAATGCCACATATCACAAGAGGTGAACCATTTGCATGAAGGGTTAAAGCATGGTTTAAAATCGGAGTTGGAAAAAAATTCTCCATCTTTGGGGCGTAGTGCAGTCTACGTGAAGGAGTCCCGTATCAATGGCCTGCCAAGGTATTTGACCATTCAGTTTGTCCGCTTTTTCTGGAAGAGGGAATCAAATCAGAAGGCCAAGATTTTGCGGAAAGTGGATTATCCTTTGGAATTGGATGTTTATGATCTGTGTTCAGAGGATCTTCGCAAAAAATTGGAAGCTCCTCGCCGGATTTTGAGGGATGAGGAAGGTAAAAAACTTGGTTTGAAACCCAGTGAAAAGAGCTCTGGTTCAAAAGACAATGATATCAAGATGTCTGATGCAGAGGGAGCCTCAAATGGAAGTGGAGAACCCTCTAATGCTATGTCTGATGAAGCTGCAGGTGTTCAACCTGAGAAGGAAACACAATTGACTGGAGTTTTTGATTTGGTTGCTGTGCTGACACACAAGGGTCGCAGTGCTGACTCGGGGCATTATGTTGCCTGGGTCAAGCAAGAAAGTGGGAAATGGATCGAGTATGATGACGATAGTCCCATCCCACAGCGGGAGGAAGATATCACAAAACTCTCTGGAGGAGGTGATTGGCATATGGCCTATATCTGCTTGTATAAGGCCCGCGTACTTCCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

441

Amino Acids

49.26

Weight (kDa)

5.61

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH_1	PF13423	60 - 406	7.7e-11	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	61 - 434	2.2e-58	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1064
AasI	GACNNNNNNGTC	1 cut(s)	362
Acc16I	TGCGCA	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	1064
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	3 cut(s)	41, 561, 738
AccII	CGCG	1 cut(s)	1311
AciI	CCGC	5 cut(s)	87, 796, 841, 1237, 1309
AclWI	GGATC	3 cut(s)	309, 900, 1211
AcsI	RAATTY	1 cut(s)	709
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	121, 1314
AfiI	CCNNNNNNNGG	4 cut(s)	116, 422, 722, 1237
AgsI	TTSAA	7 cut(s)	22, 253, 346, 522, 961, 987, 1082
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	1175
AluBI	AGCT	7 cut(s)	158, 260, 430, 606, 914, 978, 1070
AluI	AGCT	7 cut(s)	158, 260, 430, 606, 914, 978, 1070
Alw21I	GWGCWC	2 cut(s)	582, 980
Alw44I	GTGCAC	1 cut(s)	578
AlwI	GGATC	3 cut(s)	309, 900, 1211
Ama87I	CYCGRG	1 cut(s)	1159
AoxI	GGCC	5 cut(s)	546, 763, 828, 1284, 1305
ApaLI	GTGCAC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	400, 1070
ApoI	RAATTY	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	3 cut(s)	84, 547, 1306
AsuHPI	GGTGA	2 cut(s)	667, 1283
AvaI	CYCGRG	1 cut(s)	1159
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	980
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	582, 980
BbvI	GCAGC	2 cut(s)	387, 1057
BccI	CCATC	4 cut(s)	73, 388, 724, 1235
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	1177
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	264
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	1071
BfuAI	ACCTGC	1 cut(s)	1064
BfuI	GTATCC	1 cut(s)	423
BglII	AGATCT	2 cut(s)	136, 509
BisI	GCNGC	2 cut(s)	401, 1071
BlsI	GCNGC	2 cut(s)	402, 1072
Bme1390I	CCNGG	1 cut(s)	1177
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	1159
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	84, 547, 1306
BmiI	GGNNCC	4 cut(s)	85, 108, 378, 1024
BmrFI	CCNGG	1 cut(s)	1177
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	3 cut(s)	19, 448, 1003
BmuI	ACTGGG	1 cut(s)	960
BoxI	GACNNNNGTC	1 cut(s)	1221
BplI	GAGNNNNNCTC	2 cut(s)	1010, 1042
BpmI	CTGGAG	3 cut(s)	93, 1128, 1284
BsaAI	YACGTR	1 cut(s)	742
BsaJI	CCNNGG	2 cut(s)	770, 1176
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 422, 722, 1237
Bse1I	ACTGG	3 cut(s)	357, 966, 1111
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	1177
BseDI	CCNNGG	2 cut(s)	770, 1176
BseGI	GGATG	6 cut(s)	31, 399, 463, 874, 940, 1227
BseLI	CCNNNNNNNGG	4 cut(s)	116, 422, 722, 1237
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	4 cut(s)	237, 512, 621, 1077
BseNI	ACTGG	3 cut(s)	357, 966, 1111
BseRI	GAGGAG	2 cut(s)	906, 1281
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	387, 1057
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	1311
BshFI	GGCC	5 cut(s)	548, 765, 830, 1286, 1307
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	582, 980
BsiHKCI	CYCGRG	1 cut(s)	1159
BsiSI	CCGG	1 cut(s)	922
BslFI	GGGAC	3 cut(s)	97, 736, 1209
BslI	CCNNNNNNNGG	4 cut(s)	116, 422, 722, 1237
BsmFI	GGGAC	3 cut(s)	97, 736, 1209
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	5 cut(s)	548, 765, 830, 1286, 1307
BsoBI	CYCGRG	1 cut(s)	1159
Bsp1286I	GDGCHC	2 cut(s)	582, 980
Bsp143I	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
BspACI	CCGC	5 cut(s)	87, 796, 841, 1237, 1309
BspANI	GGCC	5 cut(s)	548, 765, 830, 1286, 1307
BspCNI	CTCAG	4 cut(s)	238, 511, 620, 1078
BspFNI	CGCG	1 cut(s)	1311
BspLI	GGNNCC	4 cut(s)	85, 108, 378, 1024
BspMAI	CTGCAG	1 cut(s)	1075
BspMI	ACCTGC	1 cut(s)	1064
BspPI	GGATC	3 cut(s)	309, 900, 1211
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	357, 966, 1111
BssECI	CCNNGG	2 cut(s)	770, 1176
BssMI	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	770
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	1177
Bst4CI	ACNGT	3 cut(s)	124, 325, 541
Bst6I	CTCTTC	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	2 cut(s)	767, 1309
BstDEI	CTNAG	4 cut(s)	246, 498, 607, 1086
BstF5I	GGATG	6 cut(s)	31, 399, 463, 874, 940, 1227
BstFNI	CGCG	1 cut(s)	1311
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	7 cut(s)	139, 267, 304, 512, 880, 895, 1206
BstMBI	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
BstMWI	GCNNNNNNNGC	1 cut(s)	1022
BstNI	CCWGG	1 cut(s)	1177
BstPAI	GACNNNNGTC	1 cut(s)	1221
BstSCI	CCNGG	1 cut(s)	1175
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	582
BstUI	CGCG	1 cut(s)	1311
BstV1I	GCAGC	2 cut(s)	387, 1057
BstX2I	RGATCY	3 cut(s)	136, 509, 892
BstYI	RGATCY	3 cut(s)	136, 509, 892
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	5 cut(s)	548, 765, 830, 1286, 1307
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	6 cut(s)	31, 399, 463, 874, 940, 1227
BtsI	GCAGTG	2 cut(s)	580, 1156
BtsIMutI	CAGTG	4 cut(s)	546, 580, 973, 1156
BveI	ACCTGC	1 cut(s)	1064
Cac8I	GCNNGC	2 cut(s)	767, 1309
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	3 cut(s)	84, 547, 1306
Csp6I	GTAC	2 cut(s)	120, 1313
CviAII	CATG	4 cut(s)	382, 448, 668, 683
CviQI	GTAC	2 cut(s)	120, 1313
DdeI	CTNAG	4 cut(s)	246, 498, 607, 1086
DpnI	GATC	7 cut(s)	138, 266, 303, 511, 879, 894, 1205
DpnII	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
DraI	TTTAAA	1 cut(s)	690
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
Ecl136II	GAGCTC	1 cut(s)	978
Eco130I	CCWWGG	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	980
Eco32I	GATATC	2 cut(s)	1000, 1249
Eco47I	GGWCC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	1159
EcoICRI	GAGCTC	1 cut(s)	978
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	1175
EcoRV	GATATC	2 cut(s)	1000, 1249
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	1 cut(s)	980
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	4 cut(s)	385, 451, 671, 686
FaqI	GGGAC	3 cut(s)	97, 736, 1209
FatI	CATG	4 cut(s)	381, 447, 667, 682
FauI	CCCGC	2 cut(s)	1230, 1316
FauNDI	CATATG	1 cut(s)	1281
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	3 cut(s)	41, 561, 738
Fnu4HI	GCNGC	2 cut(s)	401, 1071
FokI	GGATG	6 cut(s)	38, 406, 470, 881, 947, 1214
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	2 cut(s)	401, 1071
FspBI	CTAG	1 cut(s)	566
FspI	TGCGCA	1 cut(s)	586
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	2 cut(s)	401, 1071
GsuI	CTGGAG	3 cut(s)	93, 1128, 1284
HaeIII	GGCC	5 cut(s)	548, 765, 830, 1286, 1307
HapII	CCGG	1 cut(s)	922
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	4 cut(s)	385, 451, 671, 686
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	2 cut(s)	42, 562
HindII	GTYRAC	2 cut(s)	42, 562
HinfI	GANTC	5 cut(s)	529, 617, 749, 815, 1157
HpaII	CCGG	1 cut(s)	922
HphI	GGTGA	2 cut(s)	667, 1283
Hpy166II	GTNNAC	5 cut(s)	42, 562, 580, 658, 739
Hpy188I	TCNGA	7 cut(s)	306, 610, 697, 825, 889, 1012, 1063
Hpy188III	TCNNGA	8 cut(s)	110, 245, 282, 335, 533, 805, 1003, 1263
Hpy8I	GTNNAC	5 cut(s)	42, 562, 580, 658, 739
HpyAV	CCTTC	9 cut(s)	16, 109, 454, 538, 665, 739, 820, 935, 1084
HpyCH4III	ACNGT	3 cut(s)	124, 325, 541
HpyCH4IV	ACGT	2 cut(s)	297, 741
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1022
HpyF3I	CTNAG	4 cut(s)	246, 498, 607, 1086
HpySE526I	ACGT	2 cut(s)	297, 741
Hsp92II	CATG	4 cut(s)	385, 451, 671, 686
HspAI	GCGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
LmnI	GCTCC	4 cut(s)	112, 435, 919, 1022
Lsp1109I	GCAGC	2 cut(s)	387, 1057
LweI	GCATC	3 cut(s)	19, 448, 1003
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	297, 741
MalI	GATC	7 cut(s)	138, 266, 303, 511, 879, 894, 1205
MboI	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
MfeI	CAATTG	1 cut(s)	1100
MflI	RGATCY	3 cut(s)	136, 509, 892
MhlI	GDGCHC	2 cut(s)	582, 980
MluCI	AATT	9 cut(s)	68, 190, 386, 419, 439, 709, 863, 905, 1100
MlyI	GAGTC	3 cut(s)	626, 758, 1151
MmeI	TCCRAC	2 cut(s)	452, 681
MseI	TTAA	5 cut(s)	6, 189, 633, 677, 689
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	1237
MspI	CCGG	1 cut(s)	922
MspR9I	CCNGG	1 cut(s)	1177
MunI	CAATTG	1 cut(s)	1100
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	1177
MvnI	CGCG	1 cut(s)	1311
MwoI	GCNNNNNNNGC	1 cut(s)	1022
NdeI	CATATG	1 cut(s)	1281
NdeII	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
NlaIII	CATG	4 cut(s)	385, 451, 671, 686
NlaIV	GGNNCC	4 cut(s)	85, 108, 378, 1024
NsbI	TGCGCA	1 cut(s)	586
PaqCI	CACCTGC	1 cut(s)	1064
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	529, 815
PkrI	GCNGC	2 cut(s)	402, 1072
PleI	GAGTC	3 cut(s)	625, 757, 1151
PpsI	GAGTC	3 cut(s)	625, 757, 1151
Ppu21I	YACGTR	1 cut(s)	742
PshAI	GACNNNNGTC	1 cut(s)	1221
Psp124BI	GAGCTC	1 cut(s)	980
Psp6I	CCWGG	1 cut(s)	1175
PspGI	CCWGG	1 cut(s)	1175
PspN4I	GGNNCC	4 cut(s)	85, 108, 378, 1024
PspPI	GGNCC	3 cut(s)	84, 547, 1306
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	3 cut(s)	136, 509, 892
RsaI	GTAC	2 cut(s)	121, 1314
RsaNI	GTAC	2 cut(s)	120, 1313
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	1 cut(s)	980
SalI	GTCGAC	2 cut(s)	40, 560
SaqAI	TTAA	5 cut(s)	6, 189, 633, 677, 689
SatI	GCNGC	2 cut(s)	401, 1071
Sau3AI	GATC	7 cut(s)	136, 264, 301, 509, 877, 892, 1203
Sau96I	GGNCC	3 cut(s)	84, 547, 1306
SchI	GAGTC	3 cut(s)	626, 758, 1151
ScrFI	CCNGG	1 cut(s)	1177
SduI	GDGCHC	2 cut(s)	582, 980
SfaNI	GCATC	3 cut(s)	19, 448, 1003
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	666
Sse9I	AATT	9 cut(s)	68, 190, 386, 419, 439, 709, 863, 905, 1100
SsiI	CCGC	5 cut(s)	87, 796, 841, 1237, 1309
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	1 cut(s)	980
StyD4I	CCNGG	1 cut(s)	1175
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	3 cut(s)	124, 325, 541
TaiI	ACGT	2 cut(s)	300, 744
TaqI	TCGA	3 cut(s)	41, 561, 1206
TasI	AATT	9 cut(s)	68, 190, 386, 419, 439, 709, 863, 905, 1100
TfiI	GAWTC	2 cut(s)	529, 815
Tru1I	TTAA	5 cut(s)	6, 189, 633, 677, 689
Tru9I	TTAA	5 cut(s)	6, 189, 633, 677, 689
TscAI	CASTG	4 cut(s)	546, 587, 973, 1156
TseI	GCWGC	2 cut(s)	400, 1070
TspDTI	ATGAA	6 cut(s)	227, 363, 436, 614, 684, 1080
TspRI	CASTG	4 cut(s)	546, 587, 973, 1156
VneI	GTGCAC	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	1 cut(s)	709
XmiI	GTMKAC	3 cut(s)	41, 561, 738
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.