MD09G1195900.v1.1

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
17785028 .. 17796018
10991 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1195900.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGCTTAACGTGAGTGTAAAATGGCAAAAGGAGCTGTTGAAAGCTGTGGAAATTGATACTACTCAGCCACCTTATGTATTTAAATGCCAACTATACGACTTAACAGGGGTACCTCCTGAAAGACAGAAGATAATGGTTAAAGGTGGTTTATTGAAGGATGATGCAGACTGGTCGACTCTAGGAGTAAAAGATGGTCAAAAATTGATGATGATGGGGACAGCAGATGAGGTTGTCAAGGCTCCAGAGAAGGCTATTGTATTTGCAGAAGATCTCCCAGAAGAAGAACAAGCTCTTCACTTGGGTTATGGTGCTGGTCTATTTAACTTGGGAAACACCTGCTATATGAACTCCACCATACAATGTCTGCATTCTGTTCCAGAGTTGAAATCAGCTTTGATCAAGTATTCACATTCTGAAAGAAGCAATGATGTGGATCAGACCTCTCATATGTTGACTATTGCAACTCGTGGTTTATTTAGTGAACTGGATAAAAGTGTCAAGGCTGTGGCACCCATGCAATTTTGGATGGTATTGCGCAAAAAATATCCTCAATTTGGTCAGCAGCATAATGGTACCTTCATGCAACAGGATGCTGAAGAATGTTGGTCACAGCTTTTATACACCCTTTCTCAATCTCTAAGATCGTCCGGTTCTAGTGAAAGTCCAGACTCTGTTAAAGCACTTTTCGGAATTGAACTTGTTAGCAGGGTGCACTGCGTAGAAAGTGGGGAAGAGAGCTCAGAAGCAGAGTCAGTTTATTCTCTGAAGTGCCACATATCACATGAGGTGAACCATTTGCATGAAGGGTTAAAACATGGTTTAAAATCAGAACTGGAAAAAAATTCTCCTTCCTTGGGGCGTAGCGCCATCTATGTCAAGGAGTCTCTTATCAATGGCCTTCCAAGGTACCTGACCATTCAGTTTGTACGTTTTTTCTGGAAGAGGGAATCAAATCAGAAGGCCAAGATTTTGCGGAAAGTCGATTACCCTTTGCAATTGGATATTTTTGATCTGTGTTCAGATGATCTTCGCAAAACATTGGAAGCTCCTCGTCAGAGACTGAGGGATGAGGAAGGTAAAAAACTTGGTTTGAAACCCAGTGAAAAGAGCTCTGATTCAAAAGACAAGGATATCGAGATGTCTGATGTGGAGGGATCCTCAAACAGAAGGGGAGAATCATCTAATCCTACATCAGATGAAGGTGCTATGACTGGAATTTATGATTTGGTTGCTGTGCTGACACACAAGGGTCGTAGTGCAGACTCTGGCCATTATGTTGCCTGGGTCAAGCAAGAAAGTGGGAAATGGATCCAATATGACGATGACAATCCCTACCCACAGAAGGAGGAAGACATCACCAAACTCTCTGGAGGAGGTGATTGGCATATGGCCTATATCTGCTTGTACAAGGCCCGTACCATCCGCATGTGA

Protein Analysis

477

Amino Acids

53.73

Weight (kDa)

5.92

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 13 - 73 2.1e-08 Ubiquitin family
UCH_1 PF13423 104 - 441 3.7e-11 Ubiquitin carboxyl-terminal hydrolase
UCH PF00443 105 - 469 1.1e-57 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
Acc16I TGCGCA 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 344
Acc65I GGTACC 3 cut(s) 109, 572, 906
AccB1I GGYRCC 4 cut(s) 109, 508, 572, 906
AccI GTMKAC 1 cut(s) 173
AciI CCGC 2 cut(s) 973, 1423
AclWI GGATC 5 cut(s) 441, 1149, 1162, 1303, 1316
AcoI YGGCCR 1 cut(s) 1267
AcsI RAATTY 2 cut(s) 841, 1215
AcuI CTGAAG 2 cut(s) 615, 785
AfaI GTAC 6 cut(s) 111, 574, 908, 927, 1406, 1417
AfiI CCNNNNNNNGG 3 cut(s) 554, 854, 1342
AgsI TTSAA 6 cut(s) 40, 154, 385, 695, 1093, 1119
AjnI CCWGG 1 cut(s) 1280
AluBI AGCT 8 cut(s) 34, 44, 290, 392, 613, 738, 1046, 1110
AluI AGCT 8 cut(s) 34, 44, 290, 392, 613, 738, 1046, 1110
Alw21I GWGCWC 3 cut(s) 714, 740, 1112
Alw26I GTCTC 2 cut(s) 888, 1051
Alw44I GTGCAC 1 cut(s) 710
AlwI GGATC 5 cut(s) 441, 1149, 1162, 1303, 1316
AlwNI CAGNNNCTG 3 cut(s) 671, 1060, 1265
AoxI GGCC 5 cut(s) 895, 960, 1267, 1389, 1410
ApaLI GTGCAC 1 cut(s) 710
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 2 cut(s) 841, 1215
Asp718I GGTACC 3 cut(s) 109, 572, 906
AspLEI GCGC 2 cut(s) 537, 866
AspS9I GGNCC 1 cut(s) 1411
AsuHPI GGTGA 3 cut(s) 799, 1348, 1388
BaeGI GKGCMC 1 cut(s) 714
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BalI TGGCCA 1 cut(s) 1269
BamHI GGATCC 2 cut(s) 1154, 1308
BanI GGYRCC 4 cut(s) 109, 508, 572, 906
BanII GRGCYC 2 cut(s) 740, 1112
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 1356
Bbv12I GWGCWC 3 cut(s) 714, 740, 1112
BbvI GCAGC 1 cut(s) 574
BccI CCATC 5 cut(s) 185, 205, 520, 875, 1427
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 1 cut(s) 1282
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 2 cut(s) 888, 1051
BfaI CTAG 2 cut(s) 179, 654
BfoI RGCGCY 1 cut(s) 867
BfuAI ACCTGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 563
BlsI GCNGC 1 cut(s) 564
Bme1390I CCNGG 1 cut(s) 1282
BmgT120I GGNCC 1 cut(s) 1411
BmiI GGNNCC 7 cut(s) 111, 240, 510, 574, 908, 1156, 1310
BmrFI CCNGG 1 cut(s) 1282
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 2 cut(s) 151, 580
BmuI ACTGGG 1 cut(s) 1092
BpiI GAAGAC 1 cut(s) 1356
BplI GAGNNNNNCTC 2 cut(s) 1142, 1174
BpmI CTGGAG 2 cut(s) 225, 1389
BsaBI GATNNNNATC 2 cut(s) 432, 1326
BsaJI CCNNGG 3 cut(s) 852, 902, 1281
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 854, 1342
Bse1I ACTGG 5 cut(s) 173, 489, 837, 1098, 1216
Bse3DI GCAATG 1 cut(s) 430
Bse8I GATNNNNATC 2 cut(s) 432, 1326
BseBI CCWGG 1 cut(s) 1282
BseDI CCNNGG 3 cut(s) 852, 902, 1281
BseGI GGATG 5 cut(s) 163, 531, 595, 1072, 1419
BseJI GATNNNNATC 2 cut(s) 432, 1326
BseLI CCNNNNNNNGG 3 cut(s) 554, 854, 1342
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 77, 753, 1052
BseNI ACTGG 5 cut(s) 173, 489, 837, 1098, 1216
BseRI GAGGAG 2 cut(s) 1038, 1386
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 1278
BshFI GGCC 5 cut(s) 897, 962, 1269, 1391, 1412
BshNI GGYRCC 4 cut(s) 109, 508, 572, 906
BsiHKAI GWGCWC 3 cut(s) 714, 740, 1112
BsiSI CCGG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 554, 854, 1342
BsmAI GTCTC 2 cut(s) 888, 1051
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 5 cut(s) 897, 962, 1269, 1391, 1412
Bsp1286I GDGCHC 3 cut(s) 714, 740, 1112
Bsp1407I TGTACA 1 cut(s) 1404
Bsp143I GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
BspACI CCGC 2 cut(s) 973, 1423
BspANI GGCC 5 cut(s) 897, 962, 1269, 1391, 1412
BspCNI CTCAG 3 cut(s) 76, 752, 1053
BspLI GGNNCC 7 cut(s) 111, 240, 510, 574, 908, 1156, 1310
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 5 cut(s) 441, 1149, 1162, 1303, 1316
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 4 cut(s) 109, 508, 572, 906
BsrDI GCAATG 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 1404
BsrI ACTGG 5 cut(s) 173, 489, 837, 1098, 1216
BssECI CCNNGG 3 cut(s) 852, 902, 1281
BssMI GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 2 cut(s) 852, 902
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 1282
Bst6I CTCTTC 3 cut(s) 297, 726, 935
BstAUI TGTACA 1 cut(s) 1404
BstDEI CTNAG 4 cut(s) 63, 638, 739, 1061
BstF5I GGATG 5 cut(s) 163, 531, 595, 1072, 1419
BstH2I RGCGCY 1 cut(s) 867
BstHHI GCGC 2 cut(s) 537, 866
BstKTI GATC 8 cut(s) 271, 399, 436, 644, 1012, 1027, 1157, 1311
BstMAI GTCTC 2 cut(s) 888, 1051
BstMBI GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 1282
BstNSI RCATGY 1 cut(s) 1429
BstSCI CCNGG 1 cut(s) 1280
BstSLI GKGCMC 1 cut(s) 714
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 1356
BstX2I RGATCY 3 cut(s) 268, 1154, 1308
BstYI RGATCY 3 cut(s) 268, 1154, 1308
BsuRI GGCC 5 cut(s) 897, 962, 1269, 1391, 1412
BtsCI GGATG 5 cut(s) 163, 531, 595, 1072, 1419
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 712, 1105
BveI ACCTGC 1 cut(s) 344
CaiI CAGNNNCTG 3 cut(s) 671, 1060, 1265
CfoI GCGC 2 cut(s) 537, 866
Cfr13I GGNCC 1 cut(s) 1411
Csp6I GTAC 6 cut(s) 110, 573, 907, 926, 1405, 1416
CviAII CATG 6 cut(s) 514, 580, 782, 800, 815, 1426
CviQI GTAC 6 cut(s) 110, 573, 907, 926, 1405, 1416
DdeI CTNAG 4 cut(s) 63, 638, 739, 1061
DpnI GATC 8 cut(s) 270, 398, 435, 643, 1011, 1026, 1156, 1310
DpnII GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
DraI TTTAAA 2 cut(s) 82, 822
EaeI YGGCCR 1 cut(s) 1267
Eam1104I CTCTTC 3 cut(s) 297, 726, 935
EarI CTCTTC 3 cut(s) 297, 726, 935
Ecl136II GAGCTC 2 cut(s) 738, 1110
Eco130I CCWWGG 2 cut(s) 852, 902
Eco24I GRGCYC 2 cut(s) 740, 1112
Eco32I GATATC 1 cut(s) 1132
Eco53kI GAGCTC 2 cut(s) 738, 1110
Eco57I CTGAAG 2 cut(s) 615, 785
EcoICRI GAGCTC 2 cut(s) 738, 1110
EcoRII CCWGG 1 cut(s) 1280
EcoRV GATATC 1 cut(s) 1132
EcoT14I CCWWGG 2 cut(s) 852, 902
EcoT38I GRGCYC 2 cut(s) 740, 1112
ErhI CCWWGG 2 cut(s) 852, 902
FaeI CATG 6 cut(s) 517, 583, 785, 803, 818, 1429
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 513, 579, 781, 799, 814, 1425
FauNDI CATATG 2 cut(s) 447, 1386
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 563
FokI GGATG 5 cut(s) 170, 538, 602, 1079, 1406
FriOI GRGCYC 2 cut(s) 740, 1112
Fsp4HI GCNGC 1 cut(s) 563
FspBI CTAG 2 cut(s) 179, 654
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 2 cut(s) 536, 865
GluI GCNGC 1 cut(s) 563
GsuI CTGGAG 2 cut(s) 225, 1389
HaeII RGCGCY 1 cut(s) 867
HaeIII GGCC 5 cut(s) 897, 962, 1269, 1391, 1412
HapII CCGG 1 cut(s) 648
HhaI GCGC 2 cut(s) 537, 866
Hin1II CATG 6 cut(s) 517, 583, 785, 803, 818, 1429
Hin6I GCGC 2 cut(s) 535, 864
HinP1I GCGC 2 cut(s) 535, 864
HincII GTYRAC 2 cut(s) 174, 453
HindII GTYRAC 2 cut(s) 174, 453
HinfI GANTC 8 cut(s) 175, 668, 749, 881, 947, 1115, 1175, 1262
HpaII CCGG 1 cut(s) 648
HphI GGTGA 3 cut(s) 799, 1348, 1388
Hpy166II GTNNAC 5 cut(s) 174, 453, 482, 712, 790
Hpy188III TCNNGA 7 cut(s) 116, 242, 377, 665, 937, 1135, 1368
Hpy8I GTNNAC 5 cut(s) 174, 453, 482, 712, 790
HpyCH4IV ACGT 2 cut(s) 9, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 4 cut(s) 63, 638, 739, 1061
HpySE526I ACGT 2 cut(s) 9, 928
Hsp92II CATG 6 cut(s) 517, 583, 785, 803, 818, 1429
HspAI GCGC 2 cut(s) 535, 864
KpnI GGTACC 3 cut(s) 113, 576, 910
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 3 cut(s) 31, 244, 1051
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 2 cut(s) 151, 580
MaeI CTAG 2 cut(s) 179, 654
MaeII ACGT 2 cut(s) 9, 928
MaeIII GTNAC 1 cut(s) 606
MalI GATC 8 cut(s) 270, 398, 435, 643, 1011, 1026, 1156, 1310
MboI GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
MfeI CAATTG 1 cut(s) 995
MflI RGATCY 3 cut(s) 268, 1154, 1308
MhlI GDGCHC 3 cut(s) 714, 740, 1112
MlsI TGGCCA 1 cut(s) 1269
MluCI AATT 8 cut(s) 51, 200, 518, 551, 690, 841, 995, 1215
MluNI TGGCCA 1 cut(s) 1269
MlyI GAGTC 5 cut(s) 169, 662, 758, 890, 1256
Mox20I TGGCCA 1 cut(s) 1269
MscI TGGCCA 1 cut(s) 1269
MseI TTAA 8 cut(s) 6, 81, 101, 138, 321, 675, 809, 821
MslI CAYNNNNRTG 2 cut(s) 798, 1424
Msp20I TGGCCA 1 cut(s) 1269
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 1282
MunI CAATTG 1 cut(s) 995
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 1282
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 2 cut(s) 447, 1386
NdeII GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
NlaIII CATG 6 cut(s) 517, 583, 785, 803, 818, 1429
NlaIV GGNNCC 7 cut(s) 111, 240, 510, 574, 908, 1156, 1310
NmuCI GTSAC 1 cut(s) 606
NsbI TGCGCA 1 cut(s) 536
NspI RCATGY 1 cut(s) 1429
PaqCI CACCTGC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 947, 1115, 1175
PkrI GCNGC 1 cut(s) 564
PleI GAGTC 5 cut(s) 169, 662, 757, 889, 1256
PpsI GAGTC 5 cut(s) 169, 662, 757, 889, 1256
Psp124BI GAGCTC 2 cut(s) 740, 1112
Psp6I CCWGG 1 cut(s) 1280
PspGI CCWGG 1 cut(s) 1280
PspN4I GGNNCC 7 cut(s) 111, 240, 510, 574, 908, 1156, 1310
PspPI GGNCC 1 cut(s) 1411
PstNI CAGNNNCTG 3 cut(s) 671, 1060, 1265
PsuI RGATCY 3 cut(s) 268, 1154, 1308
RsaI GTAC 6 cut(s) 111, 574, 908, 927, 1406, 1417
RsaNI GTAC 6 cut(s) 110, 573, 907, 926, 1405, 1416
RseI CAYNNNNRTG 2 cut(s) 798, 1424
SacI GAGCTC 2 cut(s) 740, 1112
SalI GTCGAC 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 8 cut(s) 6, 81, 101, 138, 321, 675, 809, 821
SatI GCNGC 1 cut(s) 563
Sau3AI GATC 8 cut(s) 268, 396, 433, 641, 1009, 1024, 1154, 1308
Sau96I GGNCC 1 cut(s) 1411
SchI GAGTC 5 cut(s) 169, 662, 758, 890, 1256
ScrFI CCNGG 1 cut(s) 1282
SduI GDGCHC 3 cut(s) 714, 740, 1112
SfaNI GCATC 2 cut(s) 151, 580
SmiI ATTTAAAT 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 798, 1424
Sse9I AATT 8 cut(s) 51, 200, 518, 551, 690, 841, 995, 1215
SsiI CCGC 2 cut(s) 973, 1423
SspMI CTAG 2 cut(s) 179, 654
SstI GAGCTC 2 cut(s) 740, 1112
StyD4I CCNGG 1 cut(s) 1280
StyI CCWWGG 2 cut(s) 852, 902
SwaI ATTTAAAT 1 cut(s) 82
TaiI ACGT 2 cut(s) 12, 931
TaqI TCGA 3 cut(s) 173, 981, 1134
TasI AATT 8 cut(s) 51, 200, 518, 551, 690, 841, 995, 1215
TatI WGTACW 1 cut(s) 1404
TfiI GAWTC 3 cut(s) 947, 1115, 1175
Tru1I TTAA 8 cut(s) 6, 81, 101, 138, 321, 675, 809, 821
Tru9I TTAA 8 cut(s) 6, 81, 101, 138, 321, 675, 809, 821
TscAI CASTG 2 cut(s) 719, 1105
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 4 cut(s) 359, 568, 816, 1212
TspRI CASTG 2 cut(s) 719, 1105
VneI GTGCAC 1 cut(s) 710
XapI RAATTY 2 cut(s) 841, 1215
XceI RCATGY 1 cut(s) 1429
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 2 cut(s) 179, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.