Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040796.1

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1553

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040796.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

tttgtccgctttttctggaagagggaatcaaatcagaaggccaagattttgcggaaagtggattatcctttggaattggatgtttatgatctgtgttcagaggatcttcgcaaaaaattggaagctcctcgccggattttgagggatgaggaaggtaaaaaacttggtttgaaacccagtgaaaagagctctggttcaaaagacaatgatatcaagatgtctgatgcagagggaacctcaaatggaagtggagaaccctctaatgctatgtctgatgaaggtgttcaacctgagaaggaaacacaattgactggagtttatgatttggttgctgtgctgacacacaagggtcgcagtgctgactcggggcattatgttgcctgggtcaagcaagaaagtgggaaatggatcgagtatgatgacgatagtcccatcccacagcgggaggaagatatcacaaaactctctggaggaggtgattggcatatggcctatatctgcttgtataaggcccgcgtacttcctatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

176

Amino Acids

19.96

Weight (kDa)

5.52

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	516
AciI	CCGC	4 cut(s)	7, 52, 442, 514
AclWI	GGATC	2 cut(s)	111, 416
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	172, 198, 287
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	2 cut(s)	125, 189
AluI	AGCT	2 cut(s)	125, 189
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	111, 416
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	3 cut(s)	39, 489, 510
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	171
BoxI	GACNNNNGTC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	2 cut(s)	333, 489
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	2 cut(s)	177, 316
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	85, 151, 432
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	177, 316
BseRI	GAGGAG	2 cut(s)	117, 486
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	41, 491, 512
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	41, 491, 512
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	88, 103, 408
BspACI	CCGC	4 cut(s)	7, 52, 442, 514
BspANI	GGCC	3 cut(s)	41, 491, 512
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	111, 416
BsrI	ACTGG	2 cut(s)	177, 316
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	88, 103, 408
Bst2UI	CCWGG	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	85, 151, 432
BstFNI	CGCG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	91, 106, 411
BstMBI	GATC	3 cut(s)	88, 103, 408
BstNI	CCWGG	1 cut(s)	382
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	41, 491, 512
BtsCI	GGATG	3 cut(s)	85, 151, 432
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	184, 361
Cac8I	GCNNGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	518
CviJI	RGCY	5 cut(s)	41, 125, 189, 491, 512
CviKI_1	RGCY	5 cut(s)	41, 125, 189, 491, 512
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	90, 105, 410
DpnII	GATC	3 cut(s)	88, 103, 408
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	2 cut(s)	211, 454
Eco53kI	GAGCTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	380
EcoRV	GATATC	2 cut(s)	211, 454
EcoT38I	GRGCYC	1 cut(s)	191
FaqI	GGGAC	1 cut(s)	414
FauI	CCCGC	2 cut(s)	435, 521
FauNDI	CATATG	1 cut(s)	486
FokI	GGATG	3 cut(s)	92, 158, 419
FriOI	GRGCYC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	333, 489
HaeIII	GGCC	3 cut(s)	41, 491, 512
HapII	CCGG	1 cut(s)	133
HinfI	GANTC	2 cut(s)	26, 362
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	36, 100, 223, 274
Hpy188III	TCNNGA	3 cut(s)	16, 214, 468
HpyAV	CCTTC	4 cut(s)	31, 146, 272, 289
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	88, 103, 408
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	146, 177, 190, 297, 303, 367, 394, 453
LweI	GCATC	1 cut(s)	214
MalI	GATC	3 cut(s)	90, 105, 410
MboI	GATC	3 cut(s)	88, 103, 408
MboII	GAAGA	3 cut(s)	31, 98, 461
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	74, 116, 305
MlyI	GAGTC	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	382
MunI	CAATTG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	3 cut(s)	88, 103, 408
NlaIV	GGNNCC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PshAI	GACNNNNGTC	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	191
Sau3AI	GATC	3 cut(s)	88, 103, 408
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	7 cut(s)	127, 157, 191, 239, 283, 292, 478
SfaNI	GCATC	1 cut(s)	214
Sse9I	AATT	3 cut(s)	74, 116, 305
SsiI	CCGC	4 cut(s)	7, 52, 442, 514
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	380
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	74, 116, 305
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	2 cut(s)	184, 361
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	184, 361
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.