Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Reverse (-)

9549198 .. 9555168

Gene Structure 5971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11300.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCTTAACGTGAGTGTAAAATGGCAAAAGGAGCTGTTGAAAGCTGTGGAAATTGATACTACTCAGCCACCTTATGTATTTAAATGCCAACTATACGACTTAACAGGGGTACCTCCTGAAAGACAGAAGATAATGGTTAAAGGTGGTTTACTGAAGGATGATGCAGACTGGTCGACTCTAGGAGTAAAAGACGGTCAAAAATTGATGATGATGGGGACAGCAGATGAGGTTGTCAAGGCTCCAGAGAAGGCAATTGTATTTGCAGAAGATCTCCCAGAAGAAGAACAAGCTCTTCACTTGGGTTATGGTGCTGGTCTATTTAACTTGGGAAACACCTGCTATATGAACTCCACCATACAATGTCTGCATTCTGTTCCAGAGTTGAAATCAGCTTTGATCAAGTATTCACATTCTGGAAGAAGCAATGATGTGGATCAGACTTCTCATATGTTGACTATTGCAACTCGTGATTTATTTAGTGAACTGGATAAAAGTGTCAAGGCTGTGGCACCCATGCAATTTTGGATGGTATTGCGCAAAAAGTATCCTCAATTTGGTCAGCAGCATAATGGTACCTTCATGCAACAGGATGCTGAAGAATGTTGGTCACAGCTTTTATACACCCTTTCTCAATCTCTAAGATCGTCCGGTTCTAGTGAAAGTCCAGACTCTGTTAAAGCACTTTTTGGCATTGAACTTGTTAGCAGGGTGCACTGCATAGAAAGTGGGGAAGAAAGCTCAGAAGCAGAGTCAGTTTATTCTCTGAAGTGCCACATATCACATGAGGTGAACCATTTGCATGAAGGGTTAAAACATGGTTTAAAATCAGAACTGGAAAAAAATTCTCCTTCCTTGGGGCGTAGTGCCATCTATGTCAAGGAGTCTCTTATCAATGGCCTTCCAAGGTACCTGACCATTCAGTTTGTACGTTTTTTCTGGAAGAGGGAATCAAATCAGAAGGCCAAGATTTTGCGGCACTTATTTCGCCGTCCATTTGCTGCTGGTGCTATGACTGGTATTTATGTTTTGGTTGCTGTGCTGACACACAAGGGCCGTAGTGCAGACTCTGGCCATTATGTTGCCTGGGTCAAGCAAGAAAGTGGGAAATGGATCCAATATGACGATGACAATCCCTACCCACAGAAGGAGGAAGACATCACCAAACTCTCTGGAGGAGGTGATTGGCATATGGCCTATATCTGCTTGTACAAGGCCCGTACCATCCGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

411

Amino Acids

46.35

Weight (kDa)

6.95

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc16I	TGCGCA	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	344
Acc65I	GGTACC	3 cut(s)	109, 572, 906
AccB1I	GGYRCC	4 cut(s)	109, 508, 572, 906
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	2 cut(s)	973, 1225
AclWI	GGATC	3 cut(s)	441, 1105, 1118
AcoI	YGGCCR	1 cut(s)	1069
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	3 cut(s)	173, 615, 785
AfaI	GTAC	6 cut(s)	111, 574, 908, 927, 1208, 1219
AfiI	CCNNNNNNNGG	3 cut(s)	554, 854, 1144
AgsI	TTSAA	3 cut(s)	40, 385, 695
AjnI	CCWGG	1 cut(s)	1082
AluBI	AGCT	6 cut(s)	34, 44, 290, 392, 613, 738
AluI	AGCT	6 cut(s)	34, 44, 290, 392, 613, 738
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	888
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	3 cut(s)	441, 1105, 1118
AlwNI	CAGNNNCTG	2 cut(s)	671, 1067
AoxI	GGCC	6 cut(s)	895, 960, 1051, 1069, 1191, 1212
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	562, 998
ApoI	RAATTY	1 cut(s)	841
Asp718I	GGTACC	3 cut(s)	109, 572, 906
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	1051, 1213
AsuHPI	GGTGA	3 cut(s)	799, 1150, 1190
BaeGI	GKGCMC	1 cut(s)	714
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BalI	TGGCCA	1 cut(s)	1071
BamHI	GGATCC	1 cut(s)	1110
BanI	GGYRCC	4 cut(s)	109, 508, 572, 906
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	1158
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	574, 985
BccI	CCATC	4 cut(s)	205, 520, 875, 1229
BceAI	ACGGC	2 cut(s)	972, 1038
BcgI	CGANNNNNNTGC	4 cut(s)	153, 187, 965, 999
BciT130I	CCWGG	1 cut(s)	1084
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	888
BfaI	CTAG	2 cut(s)	179, 654
BfuAI	ACCTGC	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	555
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	563, 974, 999
BlsI	GCNGC	3 cut(s)	564, 975, 1000
Bme1390I	CCNGG	1 cut(s)	1084
BmgT120I	GGNCC	2 cut(s)	1051, 1213
BmiI	GGNNCC	6 cut(s)	111, 240, 510, 574, 908, 1112
BmrFI	CCNGG	1 cut(s)	1084
BmsI	GCATC	2 cut(s)	151, 580
BpiI	GAAGAC	1 cut(s)	1158
BpmI	CTGGAG	2 cut(s)	225, 1191
BsaBI	GATNNNNATC	2 cut(s)	432, 1128
BsaJI	CCNNGG	3 cut(s)	852, 902, 1083
BsaWI	WCCGGW	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	3 cut(s)	554, 854, 1144
Bse1I	ACTGG	4 cut(s)	173, 489, 837, 1018
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	2 cut(s)	432, 1128
BseBI	CCWGG	1 cut(s)	1084
BseDI	CCNNGG	3 cut(s)	852, 902, 1083
BseGI	GGATG	4 cut(s)	163, 531, 595, 1221
BseJI	GATNNNNATC	2 cut(s)	432, 1128
BseLI	CCNNNNNNNGG	3 cut(s)	554, 854, 1144
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	77, 753
BseNI	ACTGG	4 cut(s)	173, 489, 837, 1018
BseRI	GAGGAG	1 cut(s)	1188
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	574, 985
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	6 cut(s)	897, 962, 1053, 1071, 1193, 1214
BshNI	GGYRCC	4 cut(s)	109, 508, 572, 906
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	554, 854, 1144
BsmAI	GTCTC	1 cut(s)	888
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	6 cut(s)	897, 962, 1053, 1071, 1193, 1214
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp1407I	TGTACA	1 cut(s)	1206
Bsp143I	GATC	5 cut(s)	268, 396, 433, 641, 1110
BspACI	CCGC	2 cut(s)	973, 1225
BspANI	GGCC	6 cut(s)	897, 962, 1053, 1071, 1193, 1214
BspCNI	CTCAG	2 cut(s)	76, 752
BspLI	GGNNCC	6 cut(s)	111, 240, 510, 574, 908, 1112
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	441, 1105, 1118
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	4 cut(s)	109, 508, 572, 906
BsrDI	GCAATG	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	1206
BsrI	ACTGG	4 cut(s)	173, 489, 837, 1018
BssECI	CCNNGG	3 cut(s)	852, 902, 1083
BssMI	GATC	5 cut(s)	268, 396, 433, 641, 1110
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	2 cut(s)	852, 902
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	1084
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	297, 935
BstAUI	TGTACA	1 cut(s)	1206
BstDEI	CTNAG	3 cut(s)	63, 638, 739
BstF5I	GGATG	4 cut(s)	163, 531, 595, 1221
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	5 cut(s)	271, 399, 436, 644, 1113
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	5 cut(s)	268, 396, 433, 641, 1110
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 1004
BstNI	CCWGG	1 cut(s)	1084
BstNSI	RCATGY	1 cut(s)	1231
BstSCI	CCNGG	1 cut(s)	1082
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	574, 985
BstV2I	GAAGAC	1 cut(s)	1158
BstX2I	RGATCY	2 cut(s)	268, 1110
BstYI	RGATCY	2 cut(s)	268, 1110
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	6 cut(s)	897, 962, 1053, 1071, 1193, 1214
BtsCI	GGATG	4 cut(s)	163, 531, 595, 1221
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	344
CaiI	CAGNNNCTG	2 cut(s)	671, 1067
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	2 cut(s)	1051, 1213
Csp6I	GTAC	6 cut(s)	110, 573, 907, 926, 1207, 1218
CviAII	CATG	6 cut(s)	514, 580, 782, 800, 815, 1228
CviQI	GTAC	6 cut(s)	110, 573, 907, 926, 1207, 1218
DdeI	CTNAG	3 cut(s)	63, 638, 739
DpnI	GATC	5 cut(s)	270, 398, 435, 643, 1112
DpnII	GATC	5 cut(s)	268, 396, 433, 641, 1110
DraI	TTTAAA	2 cut(s)	82, 822
EaeI	YGGCCR	1 cut(s)	1069
Eam1104I	CTCTTC	2 cut(s)	297, 935
EarI	CTCTTC	2 cut(s)	297, 935
Eco130I	CCWWGG	2 cut(s)	852, 902
Eco57I	CTGAAG	3 cut(s)	173, 615, 785
EcoRII	CCWGG	1 cut(s)	1082
EcoT14I	CCWWGG	2 cut(s)	852, 902
ErhI	CCWWGG	2 cut(s)	852, 902
FaeI	CATG	6 cut(s)	517, 583, 785, 803, 818, 1231
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	6 cut(s)	513, 579, 781, 799, 814, 1227
FauNDI	CATATG	2 cut(s)	447, 1188
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	563, 974, 999
FokI	GGATG	4 cut(s)	170, 538, 602, 1208
Fsp4HI	GCNGC	3 cut(s)	563, 974, 999
FspBI	CTAG	2 cut(s)	179, 654
FspI	TGCGCA	1 cut(s)	536
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	3 cut(s)	563, 974, 999
GsuI	CTGGAG	2 cut(s)	225, 1191
HaeIII	GGCC	6 cut(s)	897, 962, 1053, 1071, 1193, 1214
HapII	CCGG	1 cut(s)	648
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	6 cut(s)	517, 583, 785, 803, 818, 1231
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	2 cut(s)	174, 453
HindII	GTYRAC	2 cut(s)	174, 453
HinfI	GANTC	6 cut(s)	175, 668, 749, 881, 947, 1064
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	3 cut(s)	799, 1150, 1190
Hpy166II	GTNNAC	6 cut(s)	149, 174, 453, 482, 712, 790
Hpy188I	TCNGA	5 cut(s)	438, 742, 765, 829, 957
Hpy188III	TCNNGA	8 cut(s)	116, 242, 377, 414, 467, 665, 937, 1170
Hpy8I	GTNNAC	6 cut(s)	149, 174, 453, 482, 712, 790
HpyAV	CCTTC	8 cut(s)	148, 241, 586, 797, 858, 908, 952, 1138
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	9, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 1004
HpyF3I	CTNAG	3 cut(s)	63, 638, 739
HpySE526I	ACGT	2 cut(s)	9, 928
Hsp92II	CATG	6 cut(s)	517, 583, 785, 803, 818, 1231
HspAI	GCGC	1 cut(s)	535
KpnI	GGTACC	3 cut(s)	113, 576, 910
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	268, 396, 433, 641, 1110
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	31, 244
Lsp1109I	GCAGC	2 cut(s)	574, 985
LweI	GCATC	2 cut(s)	151, 580
MaeI	CTAG	2 cut(s)	179, 654
MaeII	ACGT	2 cut(s)	9, 928
MaeIII	GTNAC	1 cut(s)	606
MalI	GATC	5 cut(s)	270, 398, 435, 643, 1112
MboI	GATC	5 cut(s)	268, 396, 433, 641, 1110
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	2 cut(s)	268, 1110
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	1071
MluCI	AATT	6 cut(s)	51, 200, 252, 518, 551, 841
MluNI	TGGCCA	1 cut(s)	1071
MlyI	GAGTC	5 cut(s)	169, 662, 758, 890, 1058
MnlI	CCTC	8 cut(s)	123, 220, 558, 778, 936, 1141, 1166, 1169
Mox20I	TGGCCA	1 cut(s)	1071
MscI	TGGCCA	1 cut(s)	1071
MseI	TTAA	8 cut(s)	6, 81, 101, 138, 321, 675, 809, 821
MslI	CAYNNNNRTG	2 cut(s)	798, 1226
Msp20I	TGGCCA	1 cut(s)	1071
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	1084
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	2 cut(s)	31, 1004
NdeI	CATATG	2 cut(s)	447, 1188
NdeII	GATC	5 cut(s)	268, 396, 433, 641, 1110
NlaIII	CATG	6 cut(s)	517, 583, 785, 803, 818, 1231
NlaIV	GGNNCC	6 cut(s)	111, 240, 510, 574, 908, 1112
NmuCI	GTSAC	1 cut(s)	606
NsbI	TGCGCA	1 cut(s)	536
NspI	RCATGY	1 cut(s)	1231
PaqCI	CACCTGC	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	947
PkrI	GCNGC	3 cut(s)	564, 975, 1000
PleI	GAGTC	5 cut(s)	169, 662, 757, 889, 1058
PpsI	GAGTC	5 cut(s)	169, 662, 757, 889, 1058
Psp6I	CCWGG	1 cut(s)	1082
PspGI	CCWGG	1 cut(s)	1082
PspN4I	GGNNCC	6 cut(s)	111, 240, 510, 574, 908, 1112
PspPI	GGNCC	2 cut(s)	1051, 1213
PstNI	CAGNNNCTG	2 cut(s)	671, 1067
PsuI	RGATCY	2 cut(s)	268, 1110
RsaI	GTAC	6 cut(s)	111, 574, 908, 927, 1208, 1219
RsaNI	GTAC	6 cut(s)	110, 573, 907, 926, 1207, 1218
RseI	CAYNNNNRTG	2 cut(s)	798, 1226
SalI	GTCGAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	8 cut(s)	6, 81, 101, 138, 321, 675, 809, 821
SatI	GCNGC	3 cut(s)	563, 974, 999
Sau3AI	GATC	5 cut(s)	268, 396, 433, 641, 1110
Sau96I	GGNCC	2 cut(s)	1051, 1213
SchI	GAGTC	5 cut(s)	169, 662, 758, 890, 1058
ScrFI	CCNGG	1 cut(s)	1084
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	151, 580
SmiI	ATTTAAAT	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	798, 1226
Sse9I	AATT	6 cut(s)	51, 200, 252, 518, 551, 841
SsiI	CCGC	2 cut(s)	973, 1225
SspMI	CTAG	2 cut(s)	179, 654
StyD4I	CCNGG	1 cut(s)	1082
StyI	CCWWGG	2 cut(s)	852, 902
SwaI	ATTTAAAT	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	2 cut(s)	12, 931
TaqI	TCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	51, 200, 252, 518, 551, 841
TatI	WGTACW	1 cut(s)	1206
TauI	GCSGC	1 cut(s)	976
TfiI	GAWTC	1 cut(s)	947
Tru1I	TTAA	8 cut(s)	6, 81, 101, 138, 321, 675, 809, 821
Tru9I	TTAA	8 cut(s)	6, 81, 101, 138, 321, 675, 809, 821
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	2 cut(s)	562, 998
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	3 cut(s)	359, 568, 816
TspRI	CASTG	1 cut(s)	719
VneI	GTGCAC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	841
XceI	RCATGY	1 cut(s)	1231
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	2 cut(s)	179, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.