Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013104.1

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4779

Gene Structure 4779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013104.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 781 bp

ttttctctctaggtatttgaccattcagtttgtccgctttttctggaagagggaatcaaatcagaaggccaagattttgcggaaagtggattatcctttggaattggatgtttatgatctgtgttcagaggatcttcgcaaaaaattggaagctcctcgccggattttgagggatgaggaaggtaaaaaacttggtttgaaacccagtgaaaagagctctggttcaaaagacaatgatatcaagatgtctgatgcagagggaacctcaaatggaagtggagaaccctctaatgctatgtctgatgaaggtgttcaacctgagaaggaaacacaattgactggagtttatgatttggttgctgtgctgacacacaagggtcgcagtgctgactcggggcattatgttgcctgggtcaagcaagaaagtgggaaatggatcgagtatgatgacgatagtcccatcccacagcgggaggaagatatcacaaaactctctggaggaggtgattggcatatggcctatatctgcttgtataaggcccgcgagttgcaggcctctttccataaaagaatatttcatggtgcagtttttactggtaatggcgacttggcttggctagacaaggttcaggtcgcgctaacagctggctgcaccggcaccattgcccatgtcgtagagttaagccctagagaatccgattctaagacgactgggatgagggccagggcaggcgaacctacctgctcttcctcctcttgttgtttgacggttccaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

259

Amino Acids

28.83

Weight (kDa)

6.13

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	657
AccII	CGCG	2 cut(s)	544, 636
AciI	CCGC	4 cut(s)	35, 80, 470, 542
AclWI	GGATC	2 cut(s)	139, 444
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	200, 226, 315
AjnI	CCWGG	2 cut(s)	408, 723
AluBI	AGCT	3 cut(s)	153, 217, 645
AluI	AGCT	3 cut(s)	153, 217, 645
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	139, 444
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	5 cut(s)	67, 517, 538, 553, 721
ApeKI	GCWGC	1 cut(s)	649
Asp700I	GAANNNNTTC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	2 cut(s)	539, 721
AsuHPI	GGTGA	1 cut(s)	516
AvaI	CYCGRG	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	657
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	1 cut(s)	468
BciT130I	CCWGG	2 cut(s)	410, 725
BfaI	CTAG	3 cut(s)	10, 618, 688
BfuAI	ACCTGC	1 cut(s)	750
BisI	GCNGC	1 cut(s)	650
BlsI	GCNGC	1 cut(s)	651
Bme1390I	CCNGG	2 cut(s)	410, 725
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	539, 721
BmiI	GGNNCC	3 cut(s)	263, 659, 772
BmrFI	CCNGG	2 cut(s)	410, 725
BmrI	ACTGGG	2 cut(s)	199, 721
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	2 cut(s)	199, 721
BoxI	GACNNNNGTC	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
BpmI	CTGGAG	2 cut(s)	361, 517
BsaJI	CCNNGG	2 cut(s)	409, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	1 cut(s)	654
Bse1I	ACTGG	4 cut(s)	205, 344, 599, 716
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	410, 725
BseDI	CCNNGG	2 cut(s)	409, 724
BseGI	GGATG	4 cut(s)	113, 179, 460, 721
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	4 cut(s)	205, 344, 599, 716
BseRI	GAGGAG	3 cut(s)	145, 514, 743
BseXI	GCAGC	1 cut(s)	636
BsgI	GTGCAG	2 cut(s)	604, 635
Bsh1236I	CGCG	2 cut(s)	544, 636
BshFI	GGCC	5 cut(s)	69, 519, 540, 555, 723
BshNI	GGYRCC	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	161, 655
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	5 cut(s)	69, 519, 540, 555, 723
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	116, 131, 436
BspACI	CCGC	4 cut(s)	35, 80, 470, 542
BspANI	GGCC	5 cut(s)	69, 519, 540, 555, 723
BspCNI	CTCAG	1 cut(s)	311
BspFNI	CGCG	2 cut(s)	544, 636
BspLI	GGNNCC	3 cut(s)	263, 659, 772
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	2 cut(s)	139, 444
BspQI	GCTCTTC	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	654
BsrI	ACTGG	4 cut(s)	205, 344, 599, 716
BssAI	RCCGGY	1 cut(s)	654
BssECI	CCNNGG	2 cut(s)	409, 724
BssMI	GATC	3 cut(s)	116, 131, 436
Bst2UI	CCWGG	2 cut(s)	410, 725
Bst4CI	ACNGT	1 cut(s)	770
Bst6I	CTCTTC	2 cut(s)	42, 752
BstC8I	GCNNGC	4 cut(s)	542, 553, 647, 731
BstDEI	CTNAG	3 cut(s)	319, 703, 778
BstF5I	GGATG	4 cut(s)	113, 179, 460, 721
BstFNI	CGCG	2 cut(s)	544, 636
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	3 cut(s)	119, 134, 439
BstMBI	GATC	3 cut(s)	116, 131, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	642, 655
BstNI	CCWGG	2 cut(s)	410, 725
BstPAI	GACNNNNGTC	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	408, 723
BstUI	CGCG	2 cut(s)	544, 636
BstV1I	GCAGC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	5 cut(s)	69, 519, 540, 555, 723
BtsCI	GGATG	4 cut(s)	113, 179, 460, 721
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	212, 389
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	4 cut(s)	542, 553, 647, 731
CfoI	GCGC	1 cut(s)	638
Cfr10I	RCCGGY	1 cut(s)	654
Cfr13I	GGNCC	2 cut(s)	539, 721
CviAII	CATG	2 cut(s)	579, 669
DdeI	CTNAG	3 cut(s)	319, 703, 778
DpnI	GATC	3 cut(s)	118, 133, 438
DpnII	GATC	3 cut(s)	116, 131, 436
Eam1104I	CTCTTC	2 cut(s)	42, 752
EarI	CTCTTC	2 cut(s)	42, 752
Ecl136II	GAGCTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	2 cut(s)	239, 482
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	408, 723
EcoRV	GATATC	2 cut(s)	239, 482
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	2 cut(s)	582, 672
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	578, 668
FauI	CCCGC	2 cut(s)	463, 549
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	1 cut(s)	650
FokI	GGATG	4 cut(s)	120, 186, 447, 728
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	650
FspBI	CTAG	3 cut(s)	10, 618, 688
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	1 cut(s)	650
GsuI	CTGGAG	2 cut(s)	361, 517
HaeIII	GGCC	5 cut(s)	69, 519, 540, 555, 723
HapII	CCGG	2 cut(s)	161, 655
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	2 cut(s)	582, 672
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HinfI	GANTC	4 cut(s)	54, 390, 693, 699
HpaII	CCGG	2 cut(s)	161, 655
HphI	GGTGA	1 cut(s)	516
Hpy188I	TCNGA	5 cut(s)	64, 128, 251, 302, 698
Hpy188III	TCNNGA	3 cut(s)	44, 242, 496
HpyAV	CCTTC	4 cut(s)	59, 174, 300, 317
HpyCH4III	ACNGT	1 cut(s)	770
HpyCH4V	TGCA	4 cut(s)	255, 551, 585, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	642, 655
HpyF3I	CTNAG	3 cut(s)	319, 703, 778
Hsp92II	CATG	2 cut(s)	582, 672
HspAI	GCGC	1 cut(s)	636
Kzo9I	GATC	3 cut(s)	116, 131, 436
LguI	GCTCTTC	1 cut(s)	752
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	3 cut(s)	10, 618, 688
MalI	GATC	3 cut(s)	118, 133, 438
MboI	GATC	3 cut(s)	116, 131, 436
MboII	GAAGA	4 cut(s)	59, 126, 489, 739
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	102, 144, 333
MlyI	GAGTC	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	310
MseI	TTAA	1 cut(s)	681
MspA1I	CMGCKG	2 cut(s)	470, 645
MspI	CCGG	2 cut(s)	161, 655
MspR9I	CCNGG	2 cut(s)	410, 725
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	2 cut(s)	410, 725
MvnI	CGCG	2 cut(s)	544, 636
MwoI	GCNNNNNNNGC	2 cut(s)	642, 655
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	116, 131, 436
NlaIII	CATG	2 cut(s)	582, 672
NlaIV	GGNNCC	3 cut(s)	263, 659, 772
PceI	AGGCCT	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	54, 693, 699
PkrI	GCNGC	1 cut(s)	651
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PshAI	GACNNNNGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	408, 723
PspGI	CCWGG	2 cut(s)	408, 723
PspN4I	GGNNCC	3 cut(s)	263, 659, 772
PspPI	GGNCC	2 cut(s)	539, 721
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	752
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	1 cut(s)	650
Sau3AI	GATC	3 cut(s)	116, 131, 436
Sau96I	GGNCC	2 cut(s)	539, 721
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	410, 725
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	242
Sse9I	AATT	3 cut(s)	102, 144, 333
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	4 cut(s)	35, 80, 470, 542
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	3 cut(s)	10, 618, 688
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	408, 723
TaaI	ACNGT	1 cut(s)	770
TaqI	TCGA	1 cut(s)	439
TasI	AATT	3 cut(s)	102, 144, 333
TfiI	GAWTC	3 cut(s)	54, 693, 699
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	2 cut(s)	212, 389
TseI	GCWGC	1 cut(s)	649
TspDTI	ATGAA	2 cut(s)	319, 567
TspRI	CASTG	2 cut(s)	212, 389
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	3 cut(s)	10, 618, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.