FvH4_6g32980

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26036999 .. 26044375
7377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32980.t1

Sequence Viewer

Length: 1446 bp
ATGATTAACGTGAGCGTGAAATGGCAGAAGGAGCTTTTCAAAGCTGTGGAAATCGACACGACTCAGCCTCCTTATGTGTTCAAGTGCCAATTATTCGACTTAACAGGGGTGCCTCCTGAAAGGCAGAAGATAATGGTTAAAGGTGGTTTGTTGAAGGATGATGCGGATTGGTCAACATTAGGAGTAAAACAGGGTCAAAAATTGATGATGATGGGGACTGCAGATGAGATTGTCAAGGCTCCAGAGAAGGGTACTGTTTTTGTAGAAGATCTACCGGAAGAAGAACAAGCTATCAACTTGGGTCATAGTGCTGGTCTTTTTAATCTGGGAAACACGTGTTATATGAATTCCACCTTGCAATGTCTGCATTCTGTTCCAGAGTTGAAGTCAGCTTTGATCAACTACTCGGGAAGAAGTGATGAGGTGGATCAGACTTCTCACACATTGACTGTTGCAACCCGGGAATTATTCACTGAACTGGATAAAAGTGTCAAGCCTGTGGCACCCATGCAATTTTGGATGGTGCTGCGTAAAAAGTATCCTCAATTTGGTCAGCTCCATAACAATTCCTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACCCTTTCTCAGTCCTTGAAATCGTCTGGTTCGAGTGCCAATCCAGATACAGTAAAGGCCCTTTTCGGTGTCGACCTAGTTAGCAGGGTGCACTGCGTAGAAAGTGGGGAAGAAAGCACAGAAACAGAGTCAGTTCATTCCCTTAAATGCCACATATCACATGAGGTGAACCATTTGCATGAAGGGTTAAAACATGGTTTAAAATCTGAGTTGGAAAAAAATTCTCCTGCTTTGGGGCGTAGTGCAGTCTACGTGAAGGAGTCTCGAATCAATGGCCTGCCAAGGTATTTAACCATTCAGTTTGTCCGCTTTTTCTGGAAGAGGGAATCGAATCAGAAGGCCAAGATTTTGCGGAAAGTGGATTATCCTTTGGAATTGGATGTTTATGATCTGTGTTCAGAGGATCTGCGCAAAAAATTGGAAGTGCCTCGCAAGACTTTGAGGGATGAGGAAGGTAAAAAACTTGGTTTGAAACCCAGTGAAAAGAGCTCTAGTTCAAAAGACAAGGATATCATGATGTCTGATGCGGAGGGCGCCTCAAATGGAAGTGGAGAAACCTCTAATGCTATGTCTGTTGAAGGTGTTCAACCTGAGAAGGAACCACAGATGACCGGAGTTTATGATTTGGTTGCTGTGCTGACACACAAGGGTCGCAGTGCTGACTCCGGGCATTATGTTGCCTGGGTCAAGCAAGAAAGTGGTAAATGGATAGAGTATGCTGATGACAATCCCATTCCACAGCGGGAGGAAGATATCACAAAACTCTCTGGAGGAGGTGATTGGCATATGGCATATATCTGCTTGTACAAGGCTCGTGTACTTCCAATGTAG

Protein Analysis

482

Amino Acids

54.04

Weight (kDa)

5.93

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 73 1.2e-08 Ubiquitin family
UCH_1 PF13423 104 - 437 1.2e-11 Ubiquitin carboxyl-terminal hydrolase
UCH PF00443 105 - 474 1.4e-57 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1025
AccB1I GGYRCC 3 cut(s) 109, 502, 1148
AccI GTMKAC 2 cut(s) 687, 864
AciI CCGC 5 cut(s) 164, 922, 967, 1142, 1357
AclWI GGATC 2 cut(s) 435, 1026
AcsI RAATTY 2 cut(s) 346, 835
AcuI CTGAAG 1 cut(s) 609
AcvI CACGTG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 1149
AfaI GTAC 3 cut(s) 253, 1421, 1434
AfiI CCNNNNNNNGG 3 cut(s) 248, 548, 848
AflIII ACRYGT 2 cut(s) 333, 335
AgsI TTSAA 9 cut(s) 40, 82, 154, 385, 634, 1087, 1113, 1193, 1202
AjnI CCWGG 1 cut(s) 1295
AluBI AGCT 6 cut(s) 34, 44, 290, 392, 556, 1104
AluI AGCT 6 cut(s) 34, 44, 290, 392, 556, 1104
Alw21I GWGCWC 2 cut(s) 708, 1106
Alw26I GTCTC 1 cut(s) 882
Alw44I GTGCAC 1 cut(s) 704
AlwI GGATC 2 cut(s) 435, 1026
Ama87I CYCGRG 2 cut(s) 406, 459
AoxI GGCC 3 cut(s) 672, 889, 954
ApaLI GTGCAC 1 cut(s) 704
ApeKI GCWGC 1 cut(s) 526
ApoI RAATTY 2 cut(s) 346, 835
Asp700I GAANNNNTTC 1 cut(s) 1197
AspLEI GCGC 2 cut(s) 1026, 1151
AspS9I GGNCC 1 cut(s) 673
AsuC2I CCSGG 3 cut(s) 460, 461, 1282
AsuHPI GGTGA 2 cut(s) 793, 1403
AvaI CYCGRG 2 cut(s) 406, 459
BaeGI GKGCMC 1 cut(s) 708
BanI GGYRCC 3 cut(s) 109, 502, 1148
BanII GRGCYC 1 cut(s) 1106
BauI CACGAG 1 cut(s) 1428
BbrPI CACGTG 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 708, 1106
BbvI GCAGC 1 cut(s) 513
BccI CCATC 2 cut(s) 205, 514
BciT130I CCWGG 1 cut(s) 1297
BciVI GTATCC 1 cut(s) 549
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 3 cut(s) 460, 461, 1282
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 2 cut(s) 692, 1107
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 1152
BfuI GTATCC 1 cut(s) 549
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
Bme1390I CCNGG 4 cut(s) 460, 461, 1282, 1297
BmeT110I CYCGRG 2 cut(s) 406, 459
BmgT120I GGNCC 1 cut(s) 673
BmiI GGNNCC 5 cut(s) 111, 240, 504, 1150, 1215
BmrFI CCNGG 4 cut(s) 460, 461, 1282, 1297
BmrI ACTGGG 1 cut(s) 1086
BmsI GCATC 3 cut(s) 151, 574, 1129
BmuI ACTGGG 1 cut(s) 1086
BplI GAGNNNNNCTC 2 cut(s) 1136, 1168
BpmI CTGGAG 2 cut(s) 225, 1404
BpuMI CCSGG 3 cut(s) 460, 461, 1282
BsaAI YACGTR 2 cut(s) 336, 868
BsaBI GATNNNNATC 1 cut(s) 1341
BsaHI GRCGYC 1 cut(s) 1149
BsaJI CCNNGG 3 cut(s) 459, 896, 1296
BsaWI WCCGGW 2 cut(s) 274, 1226
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 548, 848
Bse1I ACTGG 2 cut(s) 483, 1092
Bse3DI GCAATG 1 cut(s) 365
Bse8I GATNNNNATC 1 cut(s) 1341
BseBI CCWGG 1 cut(s) 1297
BseDI CCNNGG 3 cut(s) 459, 896, 1296
BseGI GGATG 5 cut(s) 163, 525, 589, 1000, 1066
BseJI GATNNNNATC 1 cut(s) 1341
BseLI CCNNNNNNNGG 3 cut(s) 248, 548, 848
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 4 cut(s) 77, 638, 813, 1197
BseNI ACTGG 2 cut(s) 483, 1092
BseRI GAGGAG 1 cut(s) 1401
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 3 cut(s) 674, 891, 956
BshNI GGYRCC 3 cut(s) 109, 502, 1148
BsiHKAI GWGCWC 2 cut(s) 708, 1106
BsiHKCI CYCGRG 2 cut(s) 406, 459
BsiSI CCGG 4 cut(s) 275, 460, 1227, 1281
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 248, 548, 848
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 3 cut(s) 674, 891, 956
BsoBI CYCGRG 2 cut(s) 406, 459
Bsp1286I GDGCHC 2 cut(s) 708, 1106
Bsp1407I TGTACA 1 cut(s) 1419
Bsp143I GATC 5 cut(s) 268, 396, 427, 1003, 1018
BspACI CCGC 5 cut(s) 164, 922, 967, 1142, 1357
BspANI GGCC 3 cut(s) 674, 891, 956
BspCNI CTCAG 4 cut(s) 76, 637, 814, 1198
BspHI TCATGA 1 cut(s) 1128
BspLI GGNNCC 5 cut(s) 111, 240, 504, 1150, 1215
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 2 cut(s) 435, 1026
BspT107I GGYRCC 3 cut(s) 109, 502, 1148
BsrDI GCAATG 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 1419
BsrI ACTGG 2 cut(s) 483, 1092
BssECI CCNNGG 3 cut(s) 459, 896, 1296
BssMI GATC 5 cut(s) 268, 396, 427, 1003, 1018
BssNI GRCGYC 1 cut(s) 1149
BssSI CACGAG 1 cut(s) 1428
BssT1I CCWWGG 1 cut(s) 896
Bst2BI CACGAG 1 cut(s) 1428
Bst2UI CCWGG 1 cut(s) 1297
Bst4CI ACNGT 3 cut(s) 256, 451, 667
Bst6I CTCTTC 1 cut(s) 929
BstACI GRCGYC 1 cut(s) 1149
BstAPI GCANNNNNTGC 1 cut(s) 364
BstAUI TGTACA 1 cut(s) 1419
BstBAI YACGTR 2 cut(s) 336, 868
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 4 cut(s) 63, 624, 822, 1206
BstF5I GGATG 5 cut(s) 163, 525, 589, 1000, 1066
BstH2I RGCGCY 1 cut(s) 1152
BstHHI GCGC 2 cut(s) 1026, 1151
BstKTI GATC 5 cut(s) 271, 399, 430, 1006, 1021
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 5 cut(s) 268, 396, 427, 1003, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 31, 364, 1148
BstNI CCWGG 1 cut(s) 1297
BstSCI CCNGG 4 cut(s) 458, 459, 1280, 1295
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 513
BstX2I RGATCY 2 cut(s) 268, 1018
BstYI RGATCY 2 cut(s) 268, 1018
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 3 cut(s) 674, 891, 956
BtsCI GGATG 5 cut(s) 163, 525, 589, 1000, 1066
BtsI GCAGTG 2 cut(s) 706, 1276
BtsIMutI CAGTG 4 cut(s) 471, 706, 1099, 1276
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 1 cut(s) 1128
CfoI GCGC 2 cut(s) 1026, 1151
Cfr13I GGNCC 1 cut(s) 673
Cfr9I CCCGGG 1 cut(s) 459
Csp6I GTAC 3 cut(s) 252, 1420, 1433
CviAII CATG 6 cut(s) 508, 574, 776, 794, 809, 1129
CviQI GTAC 3 cut(s) 252, 1420, 1433
DdeI CTNAG 4 cut(s) 63, 624, 822, 1206
DinI GGCGCC 1 cut(s) 1150
DpnI GATC 5 cut(s) 270, 398, 429, 1005, 1020
DpnII GATC 5 cut(s) 268, 396, 427, 1003, 1018
DraI TTTAAA 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 929
Ecl136II GAGCTC 1 cut(s) 1104
Eco130I CCWWGG 1 cut(s) 896
Eco24I GRGCYC 1 cut(s) 1106
Eco32I GATATC 2 cut(s) 1126, 1369
Eco53kI GAGCTC 1 cut(s) 1104
Eco57I CTGAAG 1 cut(s) 609
Eco72I CACGTG 1 cut(s) 336
Eco88I CYCGRG 2 cut(s) 406, 459
EcoICRI GAGCTC 1 cut(s) 1104
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 1295
EcoRV GATATC 2 cut(s) 1126, 1369
EcoT14I CCWWGG 1 cut(s) 896
EcoT38I GRGCYC 1 cut(s) 1106
EgeI GGCGCC 1 cut(s) 1150
EheI GGCGCC 1 cut(s) 1150
ErhI CCWWGG 1 cut(s) 896
FaeI CATG 6 cut(s) 511, 577, 779, 797, 812, 1132
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 507, 573, 775, 793, 808, 1128
FauI CCCGC 1 cut(s) 1350
FauNDI CATATG 1 cut(s) 1401
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 2 cut(s) 687, 864
Fnu4HI GCNGC 1 cut(s) 527
FokI GGATG 5 cut(s) 170, 532, 596, 1007, 1073
FriOI GRGCYC 1 cut(s) 1106
Fsp4HI GCNGC 1 cut(s) 527
FspBI CTAG 2 cut(s) 692, 1107
FspI TGCGCA 1 cut(s) 1025
GlaI GCGC 2 cut(s) 1025, 1150
GluI GCNGC 1 cut(s) 527
GsuI CTGGAG 2 cut(s) 225, 1404
HaeII RGCGCY 1 cut(s) 1152
HaeIII GGCC 3 cut(s) 674, 891, 956
HapII CCGG 4 cut(s) 275, 460, 1227, 1281
HhaI GCGC 2 cut(s) 1026, 1151
Hin1I GRCGYC 1 cut(s) 1149
Hin1II CATG 6 cut(s) 511, 577, 779, 797, 812, 1132
Hin6I GCGC 2 cut(s) 1024, 1149
HinP1I GCGC 2 cut(s) 1024, 1149
HincII GTYRAC 2 cut(s) 174, 688
HindII GTYRAC 2 cut(s) 174, 688
HinfI GANTC 7 cut(s) 61, 743, 875, 882, 941, 946, 1277
HpaII CCGG 4 cut(s) 275, 460, 1227, 1281
HphI GGTGA 2 cut(s) 793, 1403
Hpy166II GTNNAC 6 cut(s) 174, 688, 706, 784, 865, 1433
Hpy188I TCNGA 5 cut(s) 432, 823, 951, 1015, 1138
Hpy188III TCNNGA 9 cut(s) 116, 242, 377, 408, 659, 879, 931, 1129, 1383
Hpy8I GTNNAC 6 cut(s) 174, 688, 706, 784, 865, 1433
HpyCH4III ACNGT 3 cut(s) 256, 451, 667
HpyCH4IV ACGT 3 cut(s) 9, 335, 867
HpyCH4V TGCA 9 cut(s) 221, 358, 367, 455, 511, 577, 706, 793, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 364, 1148
HpyF3I CTNAG 4 cut(s) 63, 624, 822, 1206
HpySE526I ACGT 3 cut(s) 9, 335, 867
Hsp92I GRCGYC 1 cut(s) 1149
Hsp92II CATG 6 cut(s) 511, 577, 779, 797, 812, 1132
HspAI GCGC 2 cut(s) 1024, 1149
KasI GGCGCC 1 cut(s) 1148
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 5 cut(s) 268, 396, 427, 1003, 1018
LmnI GCTCC 3 cut(s) 31, 244, 561
Lsp1109I GCAGC 1 cut(s) 513
LweI GCATC 3 cut(s) 151, 574, 1129
MaeI CTAG 2 cut(s) 692, 1107
MaeII ACGT 3 cut(s) 9, 335, 867
MalI GATC 5 cut(s) 270, 398, 429, 1005, 1020
MboI GATC 5 cut(s) 268, 396, 427, 1003, 1018
MboII GAAGA 9 cut(s) 139, 278, 290, 293, 423, 602, 737, 946, 1376
MflI RGATCY 2 cut(s) 268, 1018
MhlI GDGCHC 2 cut(s) 708, 1106
Mly113I GGCGCC 1 cut(s) 1149
MlyI GAGTC 4 cut(s) 55, 752, 884, 1271
MmeI TCCRAC 2 cut(s) 578, 807
MroXI GAANNNNTTC 1 cut(s) 1197
MseI TTAA 8 cut(s) 6, 101, 138, 321, 759, 803, 815, 905
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 1357
MspI CCGG 4 cut(s) 275, 460, 1227, 1281
MspR9I CCNGG 4 cut(s) 460, 461, 1282, 1297
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 1297
MwoI GCNNNNNNNGC 3 cut(s) 31, 364, 1148
NarI GGCGCC 1 cut(s) 1149
NciI CCSGG 3 cut(s) 460, 461, 1282
NdeI CATATG 1 cut(s) 1401
NdeII GATC 5 cut(s) 268, 396, 427, 1003, 1018
NlaIII CATG 6 cut(s) 511, 577, 779, 797, 812, 1132
NlaIV GGNNCC 5 cut(s) 111, 240, 504, 1150, 1215
NsbI TGCGCA 1 cut(s) 1025
PagI TCATGA 1 cut(s) 1128
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 1197
PfeI GAWTC 3 cut(s) 882, 941, 946
PkrI GCNGC 1 cut(s) 528
PleI GAGTC 4 cut(s) 55, 751, 883, 1271
PluTI GGCGCC 1 cut(s) 1152
PmaCI CACGTG 1 cut(s) 336
PmlI CACGTG 1 cut(s) 336
PpsI GAGTC 4 cut(s) 55, 751, 883, 1271
Ppu21I YACGTR 2 cut(s) 336, 868
Psp124BI GAGCTC 1 cut(s) 1106
Psp6I CCWGG 1 cut(s) 1295
PspCI CACGTG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 1295
PspN4I GGNNCC 5 cut(s) 111, 240, 504, 1150, 1215
PspPI GGNCC 1 cut(s) 673
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 2 cut(s) 268, 1018
RsaI GTAC 3 cut(s) 253, 1421, 1434
RsaNI GTAC 3 cut(s) 252, 1420, 1433
RseI CAYNNNNRTG 1 cut(s) 792
SacI GAGCTC 1 cut(s) 1106
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 8 cut(s) 6, 101, 138, 321, 759, 803, 815, 905
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 5 cut(s) 268, 396, 427, 1003, 1018
Sau96I GGNCC 1 cut(s) 673
SchI GAGTC 4 cut(s) 55, 752, 884, 1271
ScrFI CCNGG 4 cut(s) 460, 461, 1282, 1297
SduI GDGCHC 2 cut(s) 708, 1106
SfaNI GCATC 3 cut(s) 151, 574, 1129
SfcI CTRYAG 1 cut(s) 219
SfoI GGCGCC 1 cut(s) 1150
SmaI CCCGGG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 792
SsiI CCGC 5 cut(s) 164, 922, 967, 1142, 1357
SspDI GGCGCC 1 cut(s) 1148
SspMI CTAG 2 cut(s) 692, 1107
SstI GAGCTC 1 cut(s) 1106
StyD4I CCNGG 4 cut(s) 458, 459, 1280, 1295
StyI CCWWGG 1 cut(s) 896
TaaI ACNGT 3 cut(s) 256, 451, 667
TaiI ACGT 3 cut(s) 12, 338, 870
TaqI TCGA 6 cut(s) 54, 96, 647, 687, 880, 944
TatI WGTACW 2 cut(s) 1419, 1432
TfiI GAWTC 3 cut(s) 882, 941, 946
Tru1I TTAA 8 cut(s) 6, 101, 138, 321, 759, 803, 815, 905
Tru9I TTAA 8 cut(s) 6, 101, 138, 321, 759, 803, 815, 905
TscAI CASTG 4 cut(s) 478, 713, 1099, 1276
TseI GCWGC 1 cut(s) 526
TspDTI ATGAA 4 cut(s) 359, 562, 740, 810
TspMI CCCGGG 1 cut(s) 459
TspRI CASTG 4 cut(s) 478, 713, 1099, 1276
VneI GTGCAC 1 cut(s) 704
XapI RAATTY 2 cut(s) 346, 835
XmaI CCCGGG 1 cut(s) 459
XmiI GTMKAC 2 cut(s) 687, 864
XmnI GAANNNNTTC 1 cut(s) 1197
XspI CTAG 2 cut(s) 692, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.