Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Forward (+)

59287492 .. 59294614

Gene Structure 7123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGATCAACGTGAGCGTAAAATGGCAGAAGGAGCTTTTCAAAGCTGTGGAAATTGACACTACCCAGCCCCCTTATGTATTCAAGTGCCAATTATACGACTTAACTGGGGTGCCTCCTGAAAGACAGAAGATAATGGTTAAAGGTGGTTTGTTGAAGGATGATGCAGATTGGTCGACATTAGGAGTAAAAGAGGGTCAAAAATTGATGATGATGGGGACCGCAGATGAGATTGTCAAGGCTCCAGAGAAGGGTACTGTTTTTGTTGAAGATCTACCAGAAGAAGAACAAGCTATCAACTTGGGTCATAGTGCTGGTCTATTTAATTTGGGAAACACCTGTTATATGAACTCCACTGTACAATGTCTGCATTCTGTTCCAGAGTTGAAGTCAGCTTTGATCAACTACTCACATTCAGGAAGAAGCAATGACGTGGATCAGACTTCTCACACATTGACTGTTGCAACTCGTGATTTATTCAATGAACTGGATAAAAGTGTCAAGCCTGTGGCACCCATGCAATTTTGGATGGTGCTGCGTAAAAAGTATCCTCAGTTTGGTCAGCTCCATAACAATTCCTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACCCTTTCTCAGTCTTTGAGATCTTCTGGTTCAAGTGAGAATCCAGATACAGTGAAGGCCCTTTTCGGTGTCGACCTAGTTAGCAGGGTGCACTGCGCAGAAAGTGGGGAAGAAAGCTCAGAAACAGAGTCAGTTCATTCCCTTAAATGCCACATATCACAAGAGGTGAACCATTTGCATGAAGGGTTAAAACATGGTTTAAAATCGGAGTTGGAAAAAAATTCTCCTTCTCTGGGGCGTAGTGCAGTCTACGTGAAGGAGTCCCGTATCAATGGCCTGCCAAGGTATTTGACCATTCAGTTTGTCCGCTTTTTCTGGAAGAGGGAATCAAATCAGAAGGCCAAGATTTTGCGGAAAGTGGATTATCCTTTGGAATTGGATGTTTATGATCTGTGTTCAGAGGATCTTCGCAAAAAATTGGAAGCTCCTCGCCGGATTTTGAGGGATGAGGAAGGTAAAAAACTTGGTTTGAAACCCAGTGAAAAGACCTCTGGTTCAAAAGACAATGATATCAAGATGTCTGATGCAGAGGGAGCCTCAAATGGAAGTGGAGAACCCTCTAATGCTATGTCTGATGAAGGTGTTCAACCTGAGAAGGAAACACAATTGACTGGAGTTTATGATTTGGTTGCTGTGCTGACACACAAGGGTCGCAGTGCTGACTCGGGGCATTATGTTGCCTGGGTCAAGCAAGAAAGTGGGAAATGGATCGAGTATGATGACGATTGTCCCATCCCACAGCGGGAGGAAGATATCACAAAACTCTCTGGAGGAGGTGATTGGCATATGGCCTATATCTGCTTGTATAAGGCCCGCGTACTTCCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

484

Amino Acids

54.31

Weight (kDa)

5.7

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 73	1.6e-08	Ubiquitin family
UCH_1	PF13423	104 - 448	1.5e-11	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	105 - 476	6.5e-59	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	718
AccB1I	GGYRCC	2 cut(s)	109, 508
AccI	GTMKAC	3 cut(s)	173, 693, 870
AccII	CGCG	1 cut(s)	1437
AciI	CCGC	5 cut(s)	219, 928, 973, 1363, 1435
AclWI	GGATC	3 cut(s)	441, 1032, 1337
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	3 cut(s)	253, 357, 1440
AfiI	CCNNNNNNNGG	4 cut(s)	248, 554, 854, 1363
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	1301
AluBI	AGCT	7 cut(s)	34, 44, 290, 392, 562, 738, 1046
AluI	AGCT	7 cut(s)	34, 44, 290, 392, 562, 738, 1046
Alw21I	GWGCWC	1 cut(s)	714
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	3 cut(s)	441, 1032, 1337
Ama87I	CYCGRG	1 cut(s)	1285
AoxI	GGCC	5 cut(s)	678, 895, 960, 1410, 1431
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	841
Asp700I	GAANNNNTTC	1 cut(s)	1203
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	3 cut(s)	216, 679, 1432
AsuHPI	GGTGA	2 cut(s)	799, 1409
AvaI	CYCGRG	1 cut(s)	1285
AvaII	GGWCC	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	714
BanI	GGYRCC	2 cut(s)	109, 508
BauI	CACGAG	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	3 cut(s)	205, 520, 1361
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BciT130I	CCWGG	1 cut(s)	1303
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	2 cut(s)	3, 396
BfaI	CTAG	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	555
BglII	AGATCT	2 cut(s)	268, 641
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	1303
Bme18I	GGWCC	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	1285
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	3 cut(s)	216, 679, 1432
BmiI	GGNNCC	5 cut(s)	111, 217, 240, 510, 1156
BmrFI	CCNGG	1 cut(s)	1303
BmrI	ACTGGG	2 cut(s)	114, 1092
BmsI	GCATC	3 cut(s)	151, 580, 1135
BmuI	ACTGGG	2 cut(s)	114, 1092
BoxI	GACNNNNGTC	1 cut(s)	1347
BplI	GAGNNNNNCTC	2 cut(s)	1142, 1174
BpmI	CTGGAG	3 cut(s)	225, 1254, 1410
BsaAI	YACGTR	1 cut(s)	874
BsaJI	CCNNGG	2 cut(s)	902, 1302
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 554, 854, 1363
Bse1I	ACTGG	4 cut(s)	109, 489, 1098, 1237
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	1303
BseDI	CCNNGG	2 cut(s)	902, 1302
BseGI	GGATG	6 cut(s)	163, 531, 595, 1006, 1072, 1353
BseLI	CCNNNNNNNGG	4 cut(s)	248, 554, 854, 1363
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	563, 644, 753, 1203
BseNI	ACTGG	4 cut(s)	109, 489, 1098, 1237
BseRI	GAGGAG	2 cut(s)	1038, 1407
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	1 cut(s)	519
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	885
Bsh1236I	CGCG	1 cut(s)	1437
BshFI	GGCC	5 cut(s)	680, 897, 962, 1412, 1433
BshNI	GGYRCC	2 cut(s)	109, 508
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	1285
BsiSI	CCGG	1 cut(s)	1054
BslFI	GGGAC	3 cut(s)	229, 868, 1335
BslI	CCNNNNNNNGG	4 cut(s)	248, 554, 854, 1363
BsmFI	GGGAC	3 cut(s)	229, 868, 1335
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	5 cut(s)	680, 897, 962, 1412, 1433
BsoBI	CYCGRG	1 cut(s)	1285
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
BspACI	CCGC	5 cut(s)	219, 928, 973, 1363, 1435
BspANI	GGCC	5 cut(s)	680, 897, 962, 1412, 1433
BspCNI	CTCAG	4 cut(s)	562, 643, 752, 1204
BspFNI	CGCG	1 cut(s)	1437
BspLI	GGNNCC	5 cut(s)	111, 217, 240, 510, 1156
BspPI	GGATC	3 cut(s)	441, 1032, 1337
BspT107I	GGYRCC	2 cut(s)	109, 508
BsrDI	GCAATG	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	4 cut(s)	109, 489, 1098, 1237
BssECI	CCNNGG	2 cut(s)	902, 1302
BssMI	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	902
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	1303
Bst4CI	ACNGT	4 cut(s)	256, 355, 457, 673
Bst6I	CTCTTC	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	899, 1435
BstDEI	CTNAG	4 cut(s)	549, 630, 739, 1212
BstF5I	GGATG	6 cut(s)	163, 531, 595, 1006, 1072, 1353
BstFNI	CGCG	1 cut(s)	1437
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	8 cut(s)	6, 271, 399, 436, 644, 1012, 1027, 1332
BstMBI	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 1154
BstNI	CCWGG	1 cut(s)	1303
BstPAI	GACNNNNGTC	1 cut(s)	1347
BstSCI	CCNGG	1 cut(s)	1301
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	1 cut(s)	1437
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	3 cut(s)	268, 641, 1024
BstYI	RGATCY	3 cut(s)	268, 641, 1024
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	5 cut(s)	680, 897, 962, 1412, 1433
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	6 cut(s)	163, 531, 595, 1006, 1072, 1353
BtsI	GCAGTG	2 cut(s)	712, 1282
BtsIMutI	CAGTG	5 cut(s)	351, 678, 712, 1105, 1282
Cac8I	GCNNGC	2 cut(s)	899, 1435
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	216, 679, 1432
Csp6I	GTAC	3 cut(s)	252, 356, 1439
CviAII	CATG	4 cut(s)	514, 580, 800, 815
CviQI	GTAC	3 cut(s)	252, 356, 1439
DdeI	CTNAG	4 cut(s)	549, 630, 739, 1212
DpnI	GATC	8 cut(s)	5, 270, 398, 435, 643, 1011, 1026, 1331
DpnII	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
DraI	TTTAAA	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
Eco130I	CCWWGG	1 cut(s)	902
Eco32I	GATATC	2 cut(s)	1132, 1375
Eco47I	GGWCC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	1285
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	1301
EcoRV	GATATC	2 cut(s)	1132, 1375
EcoT14I	CCWWGG	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	902
FaeI	CATG	4 cut(s)	517, 583, 803, 818
FaqI	GGGAC	3 cut(s)	229, 868, 1335
FatI	CATG	4 cut(s)	513, 579, 799, 814
FauI	CCCGC	2 cut(s)	1356, 1442
FauNDI	CATATG	1 cut(s)	1407
FbaI	TGATCA	2 cut(s)	3, 396
FblI	GTMKAC	3 cut(s)	173, 693, 870
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	6 cut(s)	170, 538, 602, 1013, 1079, 1340
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	698
FspI	TGCGCA	1 cut(s)	718
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	1 cut(s)	533
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	3 cut(s)	225, 1254, 1410
HaeIII	GGCC	5 cut(s)	680, 897, 962, 1412, 1433
HapII	CCGG	1 cut(s)	1054
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	4 cut(s)	517, 583, 803, 818
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	2 cut(s)	174, 694
HindII	GTYRAC	2 cut(s)	174, 694
HinfI	GANTC	5 cut(s)	661, 749, 881, 947, 1283
HpaII	CCGG	1 cut(s)	1054
HphI	GGTGA	2 cut(s)	799, 1409
Hpy166II	GTNNAC	5 cut(s)	174, 694, 712, 790, 871
Hpy188I	TCNGA	7 cut(s)	438, 742, 829, 957, 1021, 1144, 1195
Hpy188III	TCNNGA	9 cut(s)	116, 242, 377, 414, 467, 665, 937, 1135, 1389
Hpy8I	GTNNAC	5 cut(s)	174, 694, 712, 790, 871
HpyCH4III	ACNGT	4 cut(s)	256, 355, 457, 673
HpyCH4IV	ACGT	3 cut(s)	9, 429, 873
HpyCH4V	TGCA	9 cut(s)	164, 367, 461, 517, 583, 712, 799, 866, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 1154
HpyF3I	CTNAG	4 cut(s)	549, 630, 739, 1212
HpySE526I	ACGT	3 cut(s)	9, 429, 873
Hsp92II	CATG	4 cut(s)	517, 583, 803, 818
HspAI	GCGC	1 cut(s)	717
Ksp22I	TGATCA	2 cut(s)	3, 396
Kzo9I	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
LmnI	GCTCC	5 cut(s)	31, 244, 567, 1051, 1154
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	3 cut(s)	151, 580, 1135
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	3 cut(s)	9, 429, 873
MalI	GATC	8 cut(s)	5, 270, 398, 435, 643, 1011, 1026, 1331
MboI	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
MfeI	CAATTG	1 cut(s)	1226
MflI	RGATCY	3 cut(s)	268, 641, 1024
MhlI	GDGCHC	1 cut(s)	714
MlyI	GAGTC	3 cut(s)	758, 890, 1277
MmeI	TCCRAC	2 cut(s)	584, 813
MroXI	GAANNNNTTC	1 cut(s)	1203
MseI	TTAA	6 cut(s)	101, 138, 321, 765, 809, 821
MslI	CAYNNNNRTG	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	1363
MspI	CCGG	1 cut(s)	1054
MspR9I	CCNGG	1 cut(s)	1303
MunI	CAATTG	1 cut(s)	1226
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	1303
MvnI	CGCG	1 cut(s)	1437
MwoI	GCNNNNNNNGC	2 cut(s)	31, 1154
NdeI	CATATG	1 cut(s)	1407
NdeII	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
NlaIII	CATG	4 cut(s)	517, 583, 803, 818
NlaIV	GGNNCC	5 cut(s)	111, 217, 240, 510, 1156
NsbI	TGCGCA	1 cut(s)	718
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	1203
PfeI	GAWTC	2 cut(s)	661, 947
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	3 cut(s)	757, 889, 1277
PpsI	GAGTC	3 cut(s)	757, 889, 1277
Ppu21I	YACGTR	1 cut(s)	874
PshAI	GACNNNNGTC	1 cut(s)	1347
Psp6I	CCWGG	1 cut(s)	1301
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	1301
PspN4I	GGNNCC	5 cut(s)	111, 217, 240, 510, 1156
PspPI	GGNCC	3 cut(s)	216, 679, 1432
PsuI	RGATCY	3 cut(s)	268, 641, 1024
RsaI	GTAC	3 cut(s)	253, 357, 1440
RsaNI	GTAC	3 cut(s)	252, 356, 1439
RseI	CAYNNNNRTG	1 cut(s)	798
SalI	GTCGAC	2 cut(s)	172, 692
SaqAI	TTAA	6 cut(s)	101, 138, 321, 765, 809, 821
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	8 cut(s)	3, 268, 396, 433, 641, 1009, 1024, 1329
Sau96I	GGNCC	3 cut(s)	216, 679, 1432
SchI	GAGTC	3 cut(s)	758, 890, 1277
ScrFI	CCNGG	1 cut(s)	1303
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	3 cut(s)	151, 580, 1135
SinI	GGWCC	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	798
SsiI	CCGC	5 cut(s)	219, 928, 973, 1363, 1435
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	1301
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	4 cut(s)	256, 355, 457, 673
TaiI	ACGT	3 cut(s)	12, 432, 876
TaqI	TCGA	3 cut(s)	173, 693, 1332
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	661, 947
Tru1I	TTAA	6 cut(s)	101, 138, 321, 765, 809, 821
Tru9I	TTAA	6 cut(s)	101, 138, 321, 765, 809, 821
TscAI	CASTG	5 cut(s)	358, 678, 719, 1105, 1282
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	6 cut(s)	359, 495, 568, 746, 816, 1212
TspRI	CASTG	5 cut(s)	358, 678, 719, 1105, 1282
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	841
XmiI	GTMKAC	3 cut(s)	173, 693, 870
XmnI	GAANNNNTTC	1 cut(s)	1203
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.