Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012494

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Forward (+)

117071 .. 117553

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12494g00050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTAATGAAATTTCTTATGAAGAAAAAGCCAATGTATCCCATTTTGAGATAAAGATTATTGAAAGCAAAAGCTTAGATGAAAAATCTTCCCCTGTTGACATTATGATGTTTTGGTTAGCTAAAAGTGTGGTTGGCATCAATCAAACTCCACACTCTGTTGGTTTGGATGATATTGAGTTAGATGCACAGGGTGATTTGAGTGGCGATCCTAGCAGAAAAGTACCCATAGAAGAAAACCTTGTTAAAGTACATATTAACTCAGATTATGATGTTGGTTTATTTTACTTGGGAAACACCTATTATATGAACTCCAACATACAATTTCTGCTTTCTGTTCCAGAATTGAAATCAGTTTTGATCAAGTATTCACATTCTGAAAGAAATGATGAGGGGGATCAAGCTTCTCATAGGCTGACTATTGCAACTTGTGCTTTAATTAGTGAATTGGATAAAGGTATCAAGGCTATGGCATCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

161

Amino Acids

17.83

Weight (kDa)

4.76

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	92 - 151	1e-06	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	203, 405
AcsI	RAATTY	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	2 cut(s)	225, 252
AgsI	TTSAA	2 cut(s)	65, 349
AluBI	AGCT	3 cut(s)	75, 122, 404
AluI	AGCT	3 cut(s)	75, 122, 404
AlwI	GGATC	2 cut(s)	203, 405
ApoI	RAATTY	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	360
BfaI	CTAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	147, 175
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	208, 360, 397
BspCNI	CTCAG	1 cut(s)	275
BspPI	GGATC	2 cut(s)	203, 405
BssMI	GATC	3 cut(s)	208, 360, 397
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	76, 262
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	3 cut(s)	211, 363, 400
BstMBI	GATC	3 cut(s)	208, 360, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 431
BsuI	GTATCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	224, 251
CviJI	RGCY	6 cut(s)	32, 75, 122, 404, 415, 467
CviKI_1	RGCY	6 cut(s)	32, 75, 122, 404, 415, 467
CviQI	GTAC	2 cut(s)	224, 251
DdeI	CTNAG	2 cut(s)	76, 262
DpnI	GATC	3 cut(s)	210, 362, 399
DpnII	GATC	3 cut(s)	208, 360, 397
DraIII	CACNNNGTG	1 cut(s)	194
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FbaI	TGATCA	1 cut(s)	360
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	73, 402
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	265, 379
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	188, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 431
HpyF3I	CTNAG	2 cut(s)	76, 262
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	208, 360, 397
LpnPI	CCDG	3 cut(s)	108, 176, 354
LweI	GCATC	2 cut(s)	147, 175
MaeI	CTAG	1 cut(s)	213
MalI	GATC	3 cut(s)	210, 362, 399
MboI	GATC	3 cut(s)	208, 360, 397
MboII	GAAGA	3 cut(s)	35, 81, 245
MluCI	AATT	5 cut(s)	12, 323, 344, 438, 446
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	1 cut(s)	385
MseI	TTAA	4 cut(s)	6, 246, 258, 437
MslI	CAYNNNNRTG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	213, 431
NdeII	GATC	3 cut(s)	208, 360, 397
RsaI	GTAC	2 cut(s)	225, 252
RsaNI	GTAC	2 cut(s)	224, 251
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	6, 246, 258, 437
Sau3AI	GATC	3 cut(s)	208, 360, 397
SetI	ASST	6 cut(s)	77, 124, 243, 302, 406, 460
SfaNI	GCATC	2 cut(s)	147, 175
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	5 cut(s)	12, 323, 344, 438, 446
SspMI	CTAG	1 cut(s)	213
TasI	AATT	5 cut(s)	12, 323, 344, 438, 446
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	4 cut(s)	6, 246, 258, 437
Tru9I	TTAA	4 cut(s)	6, 246, 258, 437
TspDTI	ATGAA	4 cut(s)	24, 36, 96, 323
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.