Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Reverse (-)

47658016 .. 47661547

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0373600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCTGCGGCAGTGTGCGGAAGCAAGAGGTCCTTCTTCGAAGAGCTTCCTCCGTCGCCTCCGTTAACCAAGAGACTCCGCTGCTCTTCTTCTACCTCCCCCGTTCGATTCTCTTCTCCTTATCTCATTGATCAGCTCCGTTCCGTCTTCCCTCACATGGACCCTCAGATTCTTGAGCGAGCATTGGAAGAGTGTGGCAATGATATTGATGCTGCTATCAAGAGACTGCATGAGCTTCACATAGGATATGGGGACGAAAATGCCGTTCCTGCTGCAGAACCGAATGATATTTTACAGAAAGGGGTATTAAATGATGAGGAAGCTGCAGCTGCTTCTGAGAAGCCATCAGCTCCAAGCAACTTGCCTGCAGATGGTGCAGAATGGGTTGAATTGTTTGTCAGGGAAATGATGAGTGCCTCTAGTGTGGATGATGCTAGGGGACGTGCTGCAAAAGTGCTAGAGGTTTTAGAGAAATCCATCAGTTCACGTGCTGGTGCGGAGGCAGCCCAAAATTTTCAGAAGGAGAATATGCTACTGAAAGAACAAATTGAAGGACTGATAAGGGACAATTCCGTCCTCAAACGTGCTGTGTCTATCCAGCATGAACGTCAGAAAGAGTATGAGGGCAGAAGCCAAGAATTCCAGCATCTGAAGCAGTTAGTAACTCAATATCAGGAGCAGTTGAGGACACTTGAGCTCAACAACTATGCCTTGACAATGCATCTGAAGCAGGCACAGCAAGGCAACTCCATGCCTGGACGTTTCCATCCTGATGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

5.47

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CUE	PF02845	43 - 76	1.6e-08	CUE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
AciI	CCGC	4 cut(s)	8, 18, 79, 497
AcsI	RAATTY	2 cut(s)	511, 638
AcuI	CTGAAG	2 cut(s)	671, 746
AcvI	CACGTG	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	157, 371
AgsI	TTSAA	2 cut(s)	389, 551
AjiI	CACGTC	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	7 cut(s)	46, 136, 235, 323, 329, 350, 697
AluI	AGCT	7 cut(s)	46, 136, 235, 323, 329, 350, 697
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	67, 217
AlwNI	CAGNNNCTG	1 cut(s)	649
ApeKI	GCWGC	8 cut(s)	81, 212, 272, 323, 326, 329, 446, 503
ApoI	RAATTY	2 cut(s)	511, 638
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	30, 160
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	30, 160
BanII	GRGCYC	1 cut(s)	699
BbrPI	CACGTG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	8 cut(s)	68, 199, 259, 310, 316, 338, 433, 515
BccI	CCATC	4 cut(s)	352, 365, 485, 774
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	67, 217
BfaI	CTAG	3 cut(s)	420, 435, 458
BfmI	CTRYAG	3 cut(s)	273, 324, 366
BisI	GCNGC	9 cut(s)	9, 82, 213, 273, 324, 327, 330, 447, 504
BlsI	GCNGC	9 cut(s)	10, 83, 214, 274, 325, 328, 331, 448, 505
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	2 cut(s)	30, 160
BmgBI	CACGTC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	30, 160
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	4 cut(s)	199, 421, 655, 730
BpiI	GAAGAC	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	194, 713
BsaAI	YACGTR	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 371
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	756
BseGI	GGATG	2 cut(s)	433, 766
BseLI	CCNNNNNNNGG	2 cut(s)	157, 371
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	179, 327
BseXI	GCAGC	8 cut(s)	68, 199, 259, 310, 316, 338, 433, 515
BsgI	GTGCAG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	699
BslFI	GGGAC	3 cut(s)	266, 453, 578
BslI	CCNNNNNNNGG	2 cut(s)	157, 371
BsmAI	GTCTC	2 cut(s)	67, 217
BsmFI	GGGAC	3 cut(s)	266, 453, 578
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	8, 18, 79, 497
BspCNI	CTCAG	2 cut(s)	178, 328
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	3 cut(s)	277, 328, 370
BspQI	GCTCTTC	2 cut(s)	36, 91
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	205
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	756
Bst6I	CTCTTC	4 cut(s)	36, 91, 118, 183
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	180, 366, 732
BstDEI	CTNAG	2 cut(s)	165, 336
BstF5I	GGATG	2 cut(s)	433, 766
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	67, 217
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	7 cut(s)	269, 329, 374, 503, 652, 727, 736
BstNI	CCWGG	1 cut(s)	756
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	3 cut(s)	273, 324, 366
BstV1I	GCAGC	8 cut(s)	68, 199, 259, 310, 316, 338, 433, 515
BstV2I	GAAGAC	1 cut(s)	139
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	433, 766
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	180, 366, 732
CaiI	CAGNNNCTG	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	30, 160
CviAII	CATG	4 cut(s)	157, 230, 602, 751
DdeI	CTNAG	2 cut(s)	165, 336
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
Eam1104I	CTCTTC	4 cut(s)	36, 91, 118, 183
EarI	CTCTTC	4 cut(s)	36, 91, 118, 183
Ecl136II	GAGCTC	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	30, 160
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	2 cut(s)	671, 746
Eco72I	CACGTG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	699
FaeI	CATG	4 cut(s)	160, 233, 605, 754
FaiI	YATR	9 cut(s)	158, 231, 242, 249, 530, 603, 621, 708, 752
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	3 cut(s)	266, 453, 578
FatI	CATG	4 cut(s)	156, 229, 601, 750
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	9 cut(s)	9, 82, 213, 273, 324, 327, 330, 447, 504
FokI	GGATG	2 cut(s)	440, 753
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	9 cut(s)	9, 82, 213, 273, 324, 327, 330, 447, 504
FspBI	CTAG	3 cut(s)	420, 435, 458
GluI	GCNGC	9 cut(s)	9, 82, 213, 273, 324, 327, 330, 447, 504
Hin1II	CATG	4 cut(s)	160, 233, 605, 754
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	75, 108, 169
HpaI	GTTAAC	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	66, 485
Hpy188I	TCNGA	6 cut(s)	168, 337, 519, 612, 651, 726
Hpy188III	TCNNGA	4 cut(s)	173, 220, 674, 770
Hpy8I	GTNNAC	2 cut(s)	66, 485
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	43, 514, 545
HpyCH4IV	ACGT	5 cut(s)	442, 487, 583, 607, 760
HpyCH4V	TGCA	7 cut(s)	229, 275, 326, 368, 377, 449, 721
HpyF10VI	GCNNNNNNNGC	7 cut(s)	269, 329, 374, 503, 652, 727, 736
HpyF3I	CTNAG	2 cut(s)	165, 336
HpySE526I	ACGT	5 cut(s)	442, 487, 583, 607, 760
Hsp92II	CATG	4 cut(s)	160, 233, 605, 754
Ksp22I	TGATCA	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	2 cut(s)	36, 91
LmnI	GCTCC	3 cut(s)	141, 355, 676
Lsp1109I	GCAGC	8 cut(s)	68, 199, 259, 310, 316, 338, 433, 515
LweI	GCATC	4 cut(s)	199, 421, 655, 730
MaeI	CTAG	3 cut(s)	420, 435, 458
MaeII	ACGT	5 cut(s)	442, 487, 583, 607, 760
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	7 cut(s)	28, 53, 78, 81, 105, 139, 200
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	5 cut(s)	389, 511, 546, 568, 638
MlyI	GAGTC	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	3 cut(s)	65, 308, 781
MslI	CAYNNNNRTG	1 cut(s)	771
MspA1I	CMGCKG	2 cut(s)	81, 329
MspR9I	CCNGG	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	7 cut(s)	269, 329, 374, 503, 652, 727, 736
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	160, 233, 605, 754
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	39
PciSI	GCTCTTC	2 cut(s)	36, 91
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	108, 169
PkrI	GCNGC	9 cut(s)	10, 83, 214, 274, 325, 328, 331, 448, 505
PleI	GAGTC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	754
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	30, 160
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	3 cut(s)	277, 328, 370
PstNI	CAGNNNCTG	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	771
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	2 cut(s)	36, 91
SaqAI	TTAA	3 cut(s)	65, 308, 781
SatI	GCNGC	9 cut(s)	9, 82, 213, 273, 324, 327, 330, 447, 504
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	30, 160
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	4 cut(s)	199, 421, 655, 730
SfcI	CTRYAG	3 cut(s)	273, 324, 366
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	30, 160
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	2 cut(s)	173, 692
SmoI	CTYRAG	2 cut(s)	173, 692
Sse9I	AATT	5 cut(s)	389, 511, 546, 568, 638
SsiI	CCGC	4 cut(s)	8, 18, 79, 497
SspMI	CTAG	3 cut(s)	420, 435, 458
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	754
TaiI	ACGT	5 cut(s)	445, 490, 586, 610, 763
TaqI	TCGA	2 cut(s)	39, 106
TasI	AATT	5 cut(s)	389, 511, 546, 568, 638
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	108, 169
Tru1I	TTAA	3 cut(s)	65, 308, 781
Tru9I	TTAA	3 cut(s)	65, 308, 781
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	8 cut(s)	81, 212, 272, 323, 326, 329, 446, 503
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	5 cut(s)	42, 51, 128, 133, 562
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	2 cut(s)	30, 160
XapI	RAATTY	2 cut(s)	511, 638
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	3 cut(s)	420, 435, 458
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.