Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007525.1

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Forward (+)

68458 .. 79618

Gene Structure 11161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007525.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atgggtacactttgcatgaagcttcttggaagtgaagaccatacttctggagtttgcactcttaccggaagtggtgatcctgacagtgaaggagcctgtcacgtttctcaaggtgagatgggttggctttttcttgacccaaactggtgggcttccactagattaggcattaatatgccagcatgggctgaaaggacactgagaagaaccgattgtgatgcacacagttgggtgcactgcgcagaaagtggggaagaaagctcagaaacagagtcagttcattcccttaaatgccacatatcacaagaggtgaaccatttgcatgaagggttaaaacatggtttaaaatcggagttggaaaaaaattctccttctttggggcgtagtgcagtctacgtgaaggagtcccgtatcaatggcctgccaaggtatttgaccattcagtttgtccgctttttctggaagagggaatcaaatcagaaggccaagattttgcggaaagtggattatcctttggaattggatgtttatgatctgtgttcagaggatcttcgcaaaaaattggaagctcctcgccggattttgagggatgaggaaggtaaaaaacttggtttgaaacccagtgaaaagagctctggttcaaaagacaatgatatcaagatgtctgatgcagagggaacctcaaatggaagtggagaaccctctaatgctatgtctgatgaaggtgttcaacctgagaaggaaacacaattgactggagtttatgatttggttgctgtgctgacacacaagggtcgcagtgctgactcggggcattatgttgcctgggtcaagcaagaaagtgggaaatggatcgagtatgatgacgatagtcccatcccacagcgggaggaagatatcacaaaactctctggaggaggtggtaatagagatttattgggaggcaataaacatttccggcgacctatgagaagttttgtgggcggcggccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

331

Amino Acids

36.82

Weight (kDa)

5.88

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	5 cut(s)	451, 496, 886, 984, 987
AclWI	GGATC	3 cut(s)	71, 555, 860
AcoI	YGGCCR	1 cut(s)	988
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	377, 886
AgsI	TTSAA	3 cut(s)	616, 642, 731
AjnI	CCWGG	1 cut(s)	824
AluBI	AGCT	4 cut(s)	22, 261, 569, 633
AluI	AGCT	4 cut(s)	22, 261, 569, 633
Alw21I	GWGCWC	2 cut(s)	237, 635
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	71, 555, 860
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	3 cut(s)	418, 483, 988
ApaLI	GTGCAC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	364
AseI	ATTAAT	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	86, 125, 322
AvaI	CYCGRG	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	237, 635
BccI	CCATC	2 cut(s)	112, 884
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	826
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	985, 988
BlsI	GCNGC	2 cut(s)	986, 989
Bme1390I	CCNGG	1 cut(s)	826
BmeT110I	CYCGRG	1 cut(s)	808
BmiI	GGNNCC	2 cut(s)	94, 679
BmrFI	CCNGG	1 cut(s)	826
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	208, 658
BmuI	ACTGGG	1 cut(s)	615
BoxI	GACNNNNGTC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpmI	CTGGAG	3 cut(s)	69, 777, 933
BpuEI	CTTGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	425, 825
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 886
Bse1I	ACTGG	4 cut(s)	149, 621, 760, 991
BseBI	CCWGG	1 cut(s)	826
BseDI	CCNNGG	2 cut(s)	425, 825
BseGI	GGATG	3 cut(s)	529, 595, 876
BseLI	CCNNNNNNNGG	2 cut(s)	377, 886
BseMII	CTCAG	3 cut(s)	191, 276, 726
BseNI	ACTGG	4 cut(s)	149, 621, 760, 991
BseRI	GAGGAG	2 cut(s)	561, 930
BseSI	GKGCMC	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	420, 485, 990
BsiHKAI	GWGCWC	2 cut(s)	237, 635
BsiHKCI	CYCGRG	1 cut(s)	808
BsiSI	CCGG	3 cut(s)	66, 577, 958
BslFI	GGGAC	2 cut(s)	391, 858
BslI	CCNNNNNNNGG	2 cut(s)	377, 886
BsmFI	GGGAC	2 cut(s)	391, 858
BsnI	GGCC	3 cut(s)	420, 485, 990
BsoBI	CYCGRG	1 cut(s)	808
Bsp1286I	GDGCHC	2 cut(s)	237, 635
Bsp143I	GATC	4 cut(s)	76, 532, 547, 852
BspACI	CCGC	5 cut(s)	451, 496, 886, 984, 987
BspANI	GGCC	3 cut(s)	420, 485, 990
BspCNI	CTCAG	3 cut(s)	192, 275, 727
BspLI	GGNNCC	2 cut(s)	94, 679
BspPI	GGATC	3 cut(s)	71, 555, 860
BsrI	ACTGG	4 cut(s)	149, 621, 760, 991
BssECI	CCNNGG	2 cut(s)	425, 825
BssMI	GATC	4 cut(s)	76, 532, 547, 852
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	826
Bst4CI	ACNGT	2 cut(s)	86, 227
Bst6I	CTCTTC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	180, 422
BstDEI	CTNAG	3 cut(s)	200, 262, 735
BstF5I	GGATG	3 cut(s)	529, 595, 876
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	4 cut(s)	79, 535, 550, 855
BstMBI	GATC	4 cut(s)	76, 532, 547, 852
BstNI	CCWGG	1 cut(s)	826
BstPAI	GACNNNNGTC	1 cut(s)	870
BstSCI	CCNGG	1 cut(s)	824
BstSLI	GKGCMC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	2 cut(s)	47, 147
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	420, 485, 990
BtsCI	GGATG	3 cut(s)	529, 595, 876
BtsI	GCAGTG	2 cut(s)	235, 805
BtsIMutI	CAGTG	5 cut(s)	91, 197, 235, 628, 805
Cac8I	GCNNGC	2 cut(s)	180, 422
CfoI	GCGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	4 cut(s)	16, 183, 323, 338
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	200, 262, 735
DpnI	GATC	4 cut(s)	78, 534, 549, 854
DpnII	GATC	4 cut(s)	76, 532, 547, 852
DraI	TTTAAA	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	988
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	2 cut(s)	655, 898
Eco53kI	GAGCTC	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	808
EcoICRI	GAGCTC	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	824
EcoRV	GATATC	2 cut(s)	655, 898
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	4 cut(s)	19, 186, 326, 341
FaqI	GGGAC	2 cut(s)	391, 858
FatI	CATG	4 cut(s)	15, 182, 322, 337
FauI	CCCGC	1 cut(s)	879
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	985, 988
FokI	GGATG	3 cut(s)	536, 602, 863
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	2 cut(s)	985, 988
FspBI	CTAG	1 cut(s)	159
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	985, 988
GsuI	CTGGAG	3 cut(s)	69, 777, 933
HaeIII	GGCC	3 cut(s)	420, 485, 990
HapII	CCGG	3 cut(s)	66, 577, 958
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	19, 186, 326, 341
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	272, 404, 470, 806
HpaII	CCGG	3 cut(s)	66, 577, 958
HphI	GGTGA	3 cut(s)	86, 125, 322
Hpy166II	GTNNAC	4 cut(s)	8, 235, 313, 394
Hpy188I	TCNGA	6 cut(s)	265, 352, 480, 544, 667, 718
Hpy188III	TCNNGA	6 cut(s)	48, 80, 134, 460, 658, 912
Hpy8I	GTNNAC	4 cut(s)	8, 235, 313, 394
HpyAV	CCTTC	8 cut(s)	83, 320, 381, 394, 475, 590, 716, 733
HpyCH4III	ACNGT	2 cut(s)	86, 227
HpyCH4IV	ACGT	2 cut(s)	102, 396
HpyCH4V	TGCA	7 cut(s)	15, 57, 221, 235, 322, 389, 671
HpyF3I	CTNAG	3 cut(s)	200, 262, 735
HpySE526I	ACGT	2 cut(s)	102, 396
Hsp92II	CATG	4 cut(s)	19, 186, 326, 341
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	76, 532, 547, 852
LmnI	GCTCC	2 cut(s)	92, 574
LweI	GCATC	2 cut(s)	208, 658
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	2 cut(s)	102, 396
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	78, 534, 549, 854
MboI	GATC	4 cut(s)	76, 532, 547, 852
MboII	GAAGA	6 cut(s)	47, 216, 266, 475, 542, 905
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	237, 635
MluCI	AATT	4 cut(s)	364, 518, 560, 749
MlyI	GAGTC	3 cut(s)	281, 413, 800
MmeI	TCCRAC	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	4 cut(s)	171, 288, 332, 344
MslI	CAYNNNNRTG	2 cut(s)	173, 321
MspA1I	CMGCKG	1 cut(s)	886
MspI	CCGG	3 cut(s)	66, 577, 958
MspR9I	CCNGG	1 cut(s)	826
MunI	CAATTG	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	826
NdeII	GATC	4 cut(s)	76, 532, 547, 852
NlaIII	CATG	4 cut(s)	19, 186, 326, 341
NlaIV	GGNNCC	2 cut(s)	94, 679
NmuCI	GTSAC	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	986, 989
PleI	GAGTC	3 cut(s)	280, 412, 800
PpsI	GAGTC	3 cut(s)	280, 412, 800
Ppu21I	YACGTR	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	870
PshBI	ATTAAT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	824
PspN4I	GGNNCC	2 cut(s)	94, 679
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	173, 321
SacI	GAGCTC	1 cut(s)	635
SaqAI	TTAA	4 cut(s)	171, 288, 332, 344
SatI	GCNGC	2 cut(s)	985, 988
Sau3AI	GATC	4 cut(s)	76, 532, 547, 852
SchI	GAGTC	3 cut(s)	281, 413, 800
ScrFI	CCNGG	1 cut(s)	826
SduI	GDGCHC	2 cut(s)	237, 635
SfaNI	GCATC	2 cut(s)	208, 658
SmiMI	CAYNNNNRTG	2 cut(s)	173, 321
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	364, 518, 560, 749
SsiI	CCGC	5 cut(s)	451, 496, 886, 984, 987
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	1 cut(s)	824
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	86, 227
TaiI	ACGT	2 cut(s)	105, 399
TaqI	TCGA	1 cut(s)	855
TasI	AATT	4 cut(s)	364, 518, 560, 749
TauI	GCSGC	2 cut(s)	987, 990
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	4 cut(s)	171, 288, 332, 344
Tru9I	TTAA	4 cut(s)	171, 288, 332, 344
TscAI	CASTG	5 cut(s)	91, 204, 242, 628, 805
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	4 cut(s)	32, 269, 339, 735
TspRI	CASTG	5 cut(s)	91, 204, 242, 628, 805
VneI	GTGCAC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.