AT1G52550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012072
Physical Location & Seq
Reverse (-)
19572755 .. 19574059
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52550.1

Sequence Viewer

Length: 396 bp
ATGGCGACGGCGTTTGCCAACACGACTTCAAGCTCCAACCTTTACCTCCATCGCTGCCGTAAAAACCATCCTCTTCCATCTCCGTCGTTCTTTTCACCGTTCCGGTCGTCTCCACTTCCTTCTCAGACCCTTTTCCTCGTCCCCACTCCAAAACCTGTACGACGCATCGCGGTCGCTCCTCTCGGCCCTCCAACGCCGCCTAGTCCCGACCCACCTCCGCCTAAAAACACGACTGAGCTCACAAGTCTTGTGGGAGTAGCGTCGATGATTCAAGACCGTGTAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTTTGGGCTTCGGCTTTACAAGGAAGAGGCAGCAAAGGTAATGGTAAAGGGAAGAAGGGTTCACGCTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.23

Weight (kDa)

11.59

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 170
AciI CCGC 3 cut(s) 170, 197, 218
AclWI GGATC 1 cut(s) 317
AfaI GTAC 2 cut(s) 159, 300
AgsI TTSAA 3 cut(s) 30, 272, 391
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
AluBI AGCT 2 cut(s) 33, 238
AluI AGCT 2 cut(s) 33, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 317
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 54, 351
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 87
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 41, 363
BccI CCATC 3 cut(s) 57, 75, 85
BceAI ACGGC 2 cut(s) 24, 42
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 201
BglII AGATCT 1 cut(s) 285
BisI GCNGC 3 cut(s) 55, 197, 352
BlsI GCNGC 3 cut(s) 56, 198, 353
BmcAI AGTACT 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 185
BmsI GCATC 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 102
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 137, 225
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 41, 363
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 2 cut(s) 107, 174
BshFI GGCC 1 cut(s) 186
BsiEI CGRYCG 2 cut(s) 107, 174
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 2 cut(s) 125, 189
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 125, 189
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 285, 309
BspACI CCGC 3 cut(s) 170, 197, 218
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 136, 226
BspFNI CGCG 1 cut(s) 170
BspPI GGATC 1 cut(s) 317
BssMI GATC 2 cut(s) 285, 309
Bst4CI ACNGT 2 cut(s) 99, 278
Bst6I CTCTTC 3 cut(s) 78, 323, 340
BstDEI CTNAG 2 cut(s) 123, 234
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 2 cut(s) 288, 312
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 285, 309
BstMCI CGRYCG 2 cut(s) 107, 174
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 41, 363
BstX2I RGATCY 2 cut(s) 285, 309
BstYI RGATCY 2 cut(s) 285, 309
BsuRI GGCC 1 cut(s) 186
BtgZI GCGATG 2 cut(s) 35, 151
BtsCI GGATG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 2 cut(s) 171, 249
Csp6I GTAC 2 cut(s) 158, 299
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviJI RGCY 5 cut(s) 33, 186, 238, 329, 335
CviKI_1 RGCY 5 cut(s) 33, 186, 238, 329, 335
CviQI GTAC 2 cut(s) 158, 299
DdeI CTNAG 2 cut(s) 123, 234
DpnI GATC 2 cut(s) 287, 311
DpnII GATC 2 cut(s) 285, 309
Eam1104I CTCTTC 3 cut(s) 78, 323, 340
EarI CTCTTC 3 cut(s) 78, 323, 340
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 114
FaqI GGGAC 2 cut(s) 125, 189
Fnu4HI GCNGC 3 cut(s) 55, 197, 352
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 55, 197, 352
FspBI CTAG 1 cut(s) 201
GluI GCNGC 3 cut(s) 55, 197, 352
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 103
HgaI GACGC 2 cut(s) 171, 249
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 206, 272
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 4 cut(s) 10, 88, 165, 265
HpyAV CCTTC 2 cut(s) 129, 370
HpyCH4III ACNGT 2 cut(s) 99, 278
HpyF3I CTNAG 2 cut(s) 123, 234
Kzo9I GATC 2 cut(s) 285, 309
LmnI GCTCC 2 cut(s) 38, 181
LpnPI CCDG 2 cut(s) 116, 168
Lsp1109I GCAGC 2 cut(s) 41, 363
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 201
MalI GATC 2 cut(s) 287, 311
MboI GATC 2 cut(s) 285, 309
MboII GAAGA 4 cut(s) 65, 310, 357, 385
MflI RGATCY 2 cut(s) 285, 309
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 303
MmeI TCCRAC 2 cut(s) 60, 215
MnlI CCTC 7 cut(s) 56, 81, 146, 189, 198, 225, 341
MspI CCGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 170
NdeII GATC 2 cut(s) 285, 309
NmeAIII GCCGAG 1 cut(s) 162
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 56, 198, 353
Psp124BI GAGCTC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 2 cut(s) 285, 309
RsaI GTAC 2 cut(s) 159, 300
RsaNI GTAC 2 cut(s) 158, 299
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 3 cut(s) 55, 197, 352
Sau3AI GATC 2 cut(s) 285, 309
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 300
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 35, 42, 48, 157, 217, 240, 361
SfaNI GCATC 1 cut(s) 174
Sse9I AATT 1 cut(s) 303
SsiI CCGC 3 cut(s) 170, 197, 218
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 240
TaaI ACNGT 2 cut(s) 99, 278
TaqI TCGA 1 cut(s) 263
TasI AATT 1 cut(s) 303
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 268
TseI GCWGC 2 cut(s) 54, 351
TspGWI ACGGA 1 cut(s) 72
XspI CTAG 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.