Rh2CG363300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012072
Physical Location & Seq
Reverse (-)
49205032 .. 49210598
5567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG363300.1

Sequence Viewer

Length: 357 bp
ATGGCTGCAGCAGCCACAACTCTCTTCCTCAAACTCTCCTTCACCCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCATCTTACTTCCACCAATCCCTTCCCGCTTCATCGCCGCCGGTCATCGGGTTCTCTTCCTCGCAATCCCGGCCGTTGCCTCGCCGCCAACTCGGGACCGCCCCAGCCTCCGCCGGAATCTGACCAGACTCAGCTCTCAGGTCTTGCTGGATCTTTGTCCCAATTTCAGGACAAAGTGCACATCTTCTTTGCTGTTCTCTTTTGGATGTCTCTGTTCTTCTGGGCTTCTGTATGGGACGACAGGGATAGACCTAACAAGGGCTCACGATTTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

11.43

Isoelectric Point (pI)

67.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 104, 115, 162, 176, 188
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 124, 244, 335
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 291
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 1 cut(s) 235
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 3 cut(s) 5, 8, 11
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 20, 23
BceAI ACGGC 1 cut(s) 135
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 6, 9, 12, 115, 162
BlsI GCNGC 5 cut(s) 7, 10, 13, 116, 163
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 244, 335
Bse118I RCCGGY 1 cut(s) 117
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 124, 244, 335
BseMII CTCAG 2 cut(s) 221, 228
BseRI GAGGAG 2 cut(s) 39, 42
BseSI GKGCMC 1 cut(s) 258
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 2 cut(s) 20, 23
BseYI CCCAGC 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 3 cut(s) 118, 147, 191
BslFI GGGAC 3 cut(s) 186, 220, 326
BslI CCNNNNNNNGG 3 cut(s) 124, 244, 335
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 3 cut(s) 186, 220, 326
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 258, 341
Bsp143I GATC 1 cut(s) 227
BspACI CCGC 5 cut(s) 104, 115, 162, 176, 188
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 220, 227
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssMI GATC 1 cut(s) 227
Bst6I CTCTTC 6 cut(s) 29, 60, 66, 72, 78, 138
BstDEI CTNAG 2 cut(s) 207, 214
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 230
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 227
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 11, 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 20, 23
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 173
CviJI RGCY 7 cut(s) 5, 14, 150, 184, 211, 302, 339
CviKI_1 RGCY 7 cut(s) 5, 14, 150, 184, 211, 302, 339
DdeI CTNAG 2 cut(s) 207, 214
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 6 cut(s) 29, 60, 66, 72, 78, 138
EarI CTCTTC 6 cut(s) 29, 60, 66, 72, 78, 138
EciI GGCGGA 1 cut(s) 177
EclXI CGGCCG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 173
Eco52I CGGCCG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 341
FaiI YATR 1 cut(s) 310
FaqI GGGAC 3 cut(s) 186, 220, 326
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 115, 162
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 115, 162
GluI GCNGC 5 cut(s) 6, 9, 12, 115, 162
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 150
HapII CCGG 3 cut(s) 118, 147, 191
HinfI GANTC 2 cut(s) 194, 205
HpaII CCGG 3 cut(s) 118, 147, 191
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 171, 245, 342
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 49, 109
HpyCH4V TGCA 2 cut(s) 8, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 147
HpyF3I CTNAG 2 cut(s) 207, 214
Kzo9I GATC 1 cut(s) 227
Lsp1109I GCAGC 2 cut(s) 20, 23
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 8 cut(s) 16, 47, 53, 59, 65, 125, 253, 286
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 258, 341
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 199
MspI CCGG 3 cut(s) 118, 147, 191
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 11, 147
NciI CCSGG 1 cut(s) 147
NdeII GATC 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 7, 10, 13, 116, 163
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 227
SatI GCNGC 5 cut(s) 6, 9, 12, 115, 162
Sau3AI GATC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 2 cut(s) 258, 341
SetI ASST 3 cut(s) 213, 220, 331
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 173
Sse9I AATT 1 cut(s) 239
SsiI CCGC 5 cut(s) 104, 115, 162, 176, 188
StyD4I CCNGG 1 cut(s) 145
TasI AATT 1 cut(s) 239
TauI GCSGC 2 cut(s) 117, 164
TfiI GAWTC 1 cut(s) 194
TseI GCWGC 3 cut(s) 5, 8, 11
TspDTI ATGAA 1 cut(s) 98
VneI GTGCAC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.