Rw2G030770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012072
Physical Location & Seq
Reverse (-)
50531138 .. 50537632
6495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030770.1

Sequence Viewer

Length: 342 bp
ATGGCAGCAGCAGCAACAACTCTCTTCCTCAAACTCTCCTTCACCCGTCATCACTTCACCCCTCCTCCTCTTTCCACCAATCCCTTCCCGCTTCATCGCCGCCGGTCATCGGGTTCTCTTCCTCGCAATCCCGGCCGTTGCCTCGCCGCCAACTCGGGACCGCCCCAGCCTCCTCCGGAATCTGACCAGACTCAGCTCTCAGGTCTTGCTGGATCTTTGTCCCAATTTCAGGACAAAGTGCACATCTTCTTTGCTGTTCTCTTTTGGATGTCTCTGTTCTTCTGGGCTTCTGTATGGGATGACAGGGATAGACCTAACAAGGGCTCACGATTTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

11.59

Isoelectric Point (pI)

64.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 4 cut(s) 89, 100, 147, 161
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 133
AfiI CCNNNNNNNGG 3 cut(s) 109, 229, 320
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 276
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 5, 8, 11
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 34, 49
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 17, 20, 23
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 276
BisI GCNGC 5 cut(s) 6, 9, 12, 100, 147
BlsI GCNGC 5 cut(s) 7, 10, 13, 101, 148
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 229, 320
Bse118I RCCGGY 1 cut(s) 102
BseAI TCCGGA 1 cut(s) 175
BseGI GGATG 2 cut(s) 273, 304
BseLI CCNNNNNNNGG 3 cut(s) 109, 229, 320
BseMII CTCAG 2 cut(s) 206, 213
BseRI GAGGAG 3 cut(s) 54, 57, 162
BseSI GKGCMC 1 cut(s) 243
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 3 cut(s) 17, 20, 23
BseYI CCCAGC 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 3 cut(s) 103, 132, 176
BslFI GGGAC 2 cut(s) 171, 205
BslI CCNNNNNNNGG 3 cut(s) 109, 229, 320
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 171, 205
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 243, 326
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 4 cut(s) 89, 100, 147, 161
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 205, 212
BspEI TCCGGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 1 cut(s) 212
Bst6I CTCTTC 2 cut(s) 29, 123
BstDEI CTNAG 2 cut(s) 192, 199
BstF5I GGATG 2 cut(s) 273, 304
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 1 cut(s) 212
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 11, 132
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 17, 20, 23
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 2 cut(s) 273, 304
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 158
CviJI RGCY 5 cut(s) 135, 169, 196, 287, 324
CviKI_1 RGCY 5 cut(s) 135, 169, 196, 287, 324
DdeI CTNAG 2 cut(s) 192, 199
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 29, 123
EarI CTCTTC 2 cut(s) 29, 123
EclXI CGGCCG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 158
Eco52I CGGCCG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 326
FaiI YATR 1 cut(s) 295
FaqI GGGAC 2 cut(s) 171, 205
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 100, 147
FokI GGATG 2 cut(s) 280, 311
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 100, 147
GluI GCNGC 5 cut(s) 6, 9, 12, 100, 147
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 135
HapII CCGG 3 cut(s) 103, 132, 176
HinfI GANTC 2 cut(s) 179, 190
HpaII CCGG 3 cut(s) 103, 132, 176
HphI GGTGA 2 cut(s) 34, 49
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 156, 176, 230, 327
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 49, 94
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 132
HpyF3I CTNAG 2 cut(s) 192, 199
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 212
Lsp1109I GCAGC 3 cut(s) 17, 20, 23
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 4 cut(s) 16, 110, 238, 271
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 243, 326
MluCI AATT 1 cut(s) 224
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 8 cut(s) 38, 72, 75, 78, 132, 152, 180, 183
MroI TCCGGA 1 cut(s) 175
MspI CCGG 3 cut(s) 103, 132, 176
MspR9I CCNGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 11, 132
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 5 cut(s) 7, 10, 13, 101, 148
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 212
SatI GCNGC 5 cut(s) 6, 9, 12, 100, 147
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 243, 326
SetI ASST 3 cut(s) 198, 205, 316
SinI GGWCC 1 cut(s) 158
Sse9I AATT 1 cut(s) 224
SsiI CCGC 4 cut(s) 89, 100, 147, 161
StyD4I CCNGG 1 cut(s) 130
TasI AATT 1 cut(s) 224
TauI GCSGC 2 cut(s) 102, 149
TfiI GAWTC 1 cut(s) 179
TseI GCWGC 3 cut(s) 5, 8, 11
TspDTI ATGAA 1 cut(s) 83
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.