Rroxscaffold_2G00108960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012072
Physical Location & Seq
Forward (+)
33040279 .. 33041402
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108960.1

Sequence Viewer

Length: 258 bp
ATGGCAGCAGCAACAACTCTCTTCCTCAAACTCTCCTTCACCCGTCATCACTTCACCCTCCTCCTCTTCCTCTTCCTACTTCCACCAATCCCTTCCCGCTTCATCGCCGCCGGTCATCGGGTTCTCTTCCTCGCAATCCCGGCCGTTGCCTCGCCGCCAACTCGGGACCGCCCCAGCCTCCTCCGGAATCTGACCAGACTCAGCTCTCAGGAGATTCTCTCCAATGCCTGGGCTGTTGACATGCCAATGGACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.53

Weight (kDa)

11.61

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 228
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 4 cut(s) 97, 108, 155, 169
AcoI YGGCCR 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 117, 228
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 5, 8
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 31, 46
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 17, 20
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 140
BisI GCNGC 4 cut(s) 6, 9, 108, 155
BlsI GCNGC 4 cut(s) 7, 10, 109, 156
Bme1390I CCNGG 2 cut(s) 140, 229
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 2 cut(s) 140, 229
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 228
Bse118I RCCGGY 1 cut(s) 110
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 117, 228
BseMII CTCAG 2 cut(s) 214, 221
BseRI GAGGAG 3 cut(s) 50, 53, 170
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 17, 20
BseYI CCCAGC 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 111, 140, 184
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 117, 228
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 183
BspACI CCGC 4 cut(s) 97, 108, 155, 169
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 213, 220
BspEI TCCGGA 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 229
Bst6I CTCTTC 4 cut(s) 26, 71, 77, 131
BstDEI CTNAG 2 cut(s) 200, 207
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 138, 227
BstV1I GCAGC 2 cut(s) 17, 20
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 166
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 143, 177, 204, 233
CviKI_1 RGCY 4 cut(s) 143, 177, 204, 233
DdeI CTNAG 2 cut(s) 200, 207
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 26, 71, 77, 131
EarI CTCTTC 4 cut(s) 26, 71, 77, 131
EclXI CGGCCG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 166
Eco52I CGGCCG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 227
FaeI CATG 1 cut(s) 244
FaiI YATR 1 cut(s) 242
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 240
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 4 cut(s) 6, 9, 108, 155
Fsp4HI GCNGC 4 cut(s) 6, 9, 108, 155
GluI GCNGC 4 cut(s) 6, 9, 108, 155
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 143
HapII CCGG 3 cut(s) 111, 140, 184
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 187, 198, 214
HpaII CCGG 3 cut(s) 111, 140, 184
HphI GGTGA 2 cut(s) 31, 46
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 164, 184, 209
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 46, 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 200, 207
Hsp92II CATG 1 cut(s) 244
Kpn2I TCCGGA 1 cut(s) 183
LpnPI CCDG 8 cut(s) 124, 153, 187, 194, 197, 208, 214, 241
Lsp1109I GCAGC 2 cut(s) 17, 20
MboII GAAGA 4 cut(s) 13, 58, 64, 118
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 9 cut(s) 35, 68, 71, 74, 80, 140, 160, 188, 191
MroI TCCGGA 1 cut(s) 183
MseI TTAA 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 3 cut(s) 111, 140, 184
MspR9I CCNGG 2 cut(s) 140, 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 140
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 167
NspI RCATGY 1 cut(s) 244
PfeI GAWTC 2 cut(s) 187, 214
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 4 cut(s) 7, 10, 109, 156
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 256
SatI GCNGC 4 cut(s) 6, 9, 108, 155
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 2 cut(s) 140, 229
SetI ASST 1 cut(s) 206
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 245
SsiI CCGC 4 cut(s) 97, 108, 155, 169
StyD4I CCNGG 2 cut(s) 138, 227
TauI GCSGC 2 cut(s) 110, 157
TfiI GAWTC 2 cut(s) 187, 214
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TseI GCWGC 2 cut(s) 5, 8
TspDTI ATGAA 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 166
XceI RCATGY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.