Rorug02G0326000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012072
Physical Location & Seq
Reverse (-)
39988762 .. 39989256
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0326000.1

Sequence Viewer

Length: 495 bp
ATGAAGGCTGTTCCTGTTTATCTAGCCGAGATGGCACCAGCAAAGATTAGAGGGGAACTTAACATTGGCTTTTCCATAGCCGTCACGCTTGGTATTCTAGTGGTCAATCTTGTTAACTATTTGCACTTCGAAGATCAAGGGCGGACATGGGTGGAGAGTTTCTTTAGCTCTTGTAGCCATACTGGCATTGATGATGAGCGTAGGAGCACTTTTTTTTACCTGACACTCCAAATTCAATTCTACAGATCTAGAGGTTATCCTGATAAGGCCAAAACAATGTTACAAAAGGTTCGTGGCATAGAAAACGTGGACGATGAGTTCCAAGACCTTATTAATGCAAGTGATGTTGCAAAGAAAGTGGAGAATCCATGGAGAAACATAGCACAGCCCAGATATAGGCCTCAACTTGTTATTAGCTGTCTCATTCCTTTCTTCCAACAACTTACCGGCATCAATGTGATCATGTTTTATGCACCTATTCTTTCAAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.88

Weight (kDa)

8.56

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 3 - 161 4.7e-22 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 2 cut(s) 236, 486
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 2 cut(s) 168, 417
AluI AGCT 2 cut(s) 168, 417
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 425
AoxI GGCC 2 cut(s) 267, 398
ApoI RAATTY 1 cut(s) 231
AseI ATTAAT 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 129
BanI GGYRCC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 3 cut(s) 23, 98, 249
BfmI CTRYAG 1 cut(s) 241
BglI GCCNNNNNGGC 2 cut(s) 32, 183
BglII AGATCT 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 187
BshFI GGCC 2 cut(s) 269, 400
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 447
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 2 cut(s) 269, 400
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 133, 245, 459
Bsp19I CCATGG 1 cut(s) 368
BspACI CCGC 1 cut(s) 142
BspANI GGCC 2 cut(s) 269, 400
BspLI GGNNCC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 3 cut(s) 133, 245, 459
BssT1I CCWWGG 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 368
BstKTI GATC 3 cut(s) 136, 248, 462
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 133, 245, 459
BstMWI GCNNNNNNNGC 3 cut(s) 32, 174, 183
BstSFI CTRYAG 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 2 cut(s) 269, 400
BtgI CCRYGG 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 446
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 3 cut(s) 147, 369, 463
DpnI GATC 3 cut(s) 135, 247, 461
DpnII GATC 3 cut(s) 133, 245, 459
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 3 cut(s) 150, 372, 466
FaiI YATR 9 cut(s) 77, 148, 180, 299, 370, 380, 396, 464, 471
FatI CATG 3 cut(s) 146, 368, 462
FbaI TGATCA 1 cut(s) 459
FspBI CTAG 3 cut(s) 23, 98, 249
HaeIII GGCC 2 cut(s) 269, 400
HapII CCGG 1 cut(s) 447
Hin1II CATG 3 cut(s) 150, 372, 466
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 364
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 447
Hpy166II GTNNAC 2 cut(s) 115, 310
Hpy188III TCNNGA 3 cut(s) 249, 260, 486
Hpy8I GTNNAC 2 cut(s) 115, 310
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 124, 338, 350, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 174, 183
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 150, 372, 466
Ksp22I TGATCA 1 cut(s) 459
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 133, 245, 459
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 7 cut(s) 27, 51, 168, 233, 273, 403, 460
LweI GCATC 1 cut(s) 459
MaeI CTAG 3 cut(s) 23, 98, 249
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 82, 279
MalI GATC 3 cut(s) 135, 247, 461
MboI GATC 3 cut(s) 133, 245, 459
MboII GAAGA 2 cut(s) 143, 424
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 231, 236
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 3 cut(s) 44, 245, 411
MseI TTAA 3 cut(s) 60, 114, 333
MslI CAYNNNNRTG 1 cut(s) 455
MspI CCGG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 32, 174, 183
NcoI CCATGG 1 cut(s) 368
NdeII GATC 3 cut(s) 133, 245, 459
NlaIII CATG 3 cut(s) 150, 372, 466
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 129
PceI AGGCCT 1 cut(s) 400
PfeI GAWTC 1 cut(s) 364
PshBI ATTAAT 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 3 cut(s) 60, 114, 333
Sau3AI GATC 3 cut(s) 133, 245, 459
SduI GDGCHC 1 cut(s) 209
SetI ASST 8 cut(s) 170, 222, 256, 291, 309, 330, 419, 478
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 455
Sse9I AATT 2 cut(s) 231, 236
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 1 cut(s) 142
SspMI CTAG 3 cut(s) 23, 98, 249
StuI AGGCCT 1 cut(s) 400
StyI CCWWGG 1 cut(s) 368
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 231, 236
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 3 cut(s) 60, 114, 333
Tru9I TTAA 3 cut(s) 60, 114, 333
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 231
XbaI TCTAGA 1 cut(s) 248
XspI CTAG 3 cut(s) 23, 98, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.