Rh2DG400500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012072
Physical Location & Seq
Reverse (-)
58261716 .. 58268741
7026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG400500.1

Sequence Viewer

Length: 339 bp
ATGGCTGCAGCAGCAACAACTCTCTTCCTCAAACTCTCCTTCACCCCTCCTCCTCTTCCTCTTCCTACTTCCACCAATCCCTTCCCGCTTCATCGCCGCCGGTCATCGGGTTCTCTTCCTCGCAATCCCGGCCGTTGCCTCGCCGCCAACTCCGGACCGCCCCAGCCTCCTCCGGAATCTGATCAGACTCAGCTCTCAGGTCTTGCTGGATCTTTGTCCCAATTTCAGGACAAAGTGCACATCTTCTTTGCTGTTCTCTTTTGGATGTCTCTGTTCTTCTGGGCTTCTGTATGGGACGACAGGGATAGACCTAACAAGGGCTCACGATTTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.5

Weight (kDa)

11.43

Isoelectric Point (pI)

67.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 152, 172
AciI CCGC 4 cut(s) 86, 97, 144, 158
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 130
AfiI CCNNNNNNNGG 3 cut(s) 106, 226, 317
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 273
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 1 cut(s) 217
Aor13HI TCCGGA 2 cut(s) 152, 172
AoxI GGCC 1 cut(s) 130
ApaLI GTGCAC 1 cut(s) 236
ApeKI GCWGC 3 cut(s) 5, 8, 11
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 20, 23
BceAI ACGGC 1 cut(s) 117
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 6, 9, 12, 97, 144
BlsI GCNGC 5 cut(s) 7, 10, 13, 98, 145
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 152, 172
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 226, 317
Bse118I RCCGGY 1 cut(s) 99
BseAI TCCGGA 2 cut(s) 152, 172
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 3 cut(s) 106, 226, 317
BseMII CTCAG 2 cut(s) 203, 210
BseRI GAGGAG 3 cut(s) 39, 42, 159
BseSI GKGCMC 1 cut(s) 240
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 20, 23
BseYI CCCAGC 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 4 cut(s) 100, 129, 153, 173
BslFI GGGAC 2 cut(s) 202, 308
BslI CCNNNNNNNGG 3 cut(s) 106, 226, 317
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 202, 308
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 240, 323
Bsp13I TCCGGA 2 cut(s) 152, 172
Bsp143I GATC 2 cut(s) 181, 209
BspACI CCGC 4 cut(s) 86, 97, 144, 158
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 2 cut(s) 202, 209
BspEI TCCGGA 2 cut(s) 152, 172
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 2 cut(s) 181, 209
Bst6I CTCTTC 4 cut(s) 29, 60, 66, 120
BstDEI CTNAG 2 cut(s) 189, 196
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 2 cut(s) 184, 212
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 181, 209
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 11, 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 20, 23
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 155
CpoI CGGWCCG 1 cut(s) 155
CspI CGGWCCG 1 cut(s) 155
CviJI RGCY 6 cut(s) 5, 132, 166, 193, 284, 321
CviKI_1 RGCY 6 cut(s) 5, 132, 166, 193, 284, 321
DdeI CTNAG 2 cut(s) 189, 196
DpnI GATC 2 cut(s) 183, 211
DpnII GATC 2 cut(s) 181, 209
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 4 cut(s) 29, 60, 66, 120
EarI CTCTTC 4 cut(s) 29, 60, 66, 120
EclXI CGGCCG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 323
FaiI YATR 1 cut(s) 292
FaqI GGGAC 2 cut(s) 202, 308
FauI CCCGC 1 cut(s) 93
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 97, 144
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 97, 144
GluI GCNGC 5 cut(s) 6, 9, 12, 97, 144
GsaI CCCAGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 132
HapII CCGG 4 cut(s) 100, 129, 153, 173
HinfI GANTC 2 cut(s) 176, 187
HpaII CCGG 4 cut(s) 100, 129, 153, 173
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 181, 186
Hpy188III TCNNGA 4 cut(s) 153, 173, 227, 324
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 49, 91
HpyCH4V TGCA 2 cut(s) 8, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 129
HpyF3I CTNAG 2 cut(s) 189, 196
Kpn2I TCCGGA 2 cut(s) 152, 172
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 209
Lsp1109I GCAGC 2 cut(s) 20, 23
MalI GATC 2 cut(s) 183, 211
MboI GATC 2 cut(s) 181, 209
MboII GAAGA 6 cut(s) 16, 47, 53, 107, 235, 268
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 240, 323
MluCI AATT 1 cut(s) 221
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 9 cut(s) 38, 57, 60, 63, 69, 129, 149, 177, 180
MroI TCCGGA 2 cut(s) 152, 172
MspI CCGG 4 cut(s) 100, 129, 153, 173
MspR9I CCNGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 11, 129
NciI CCSGG 1 cut(s) 129
NdeII GATC 2 cut(s) 181, 209
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 5 cut(s) 7, 10, 13, 98, 145
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 209
Rsr2I CGGWCCG 1 cut(s) 155
RsrII CGGWCCG 1 cut(s) 155
SatI GCNGC 5 cut(s) 6, 9, 12, 97, 144
Sau3AI GATC 2 cut(s) 181, 209
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 240, 323
SetI ASST 3 cut(s) 195, 202, 313
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 155
Sse9I AATT 1 cut(s) 221
SsiI CCGC 4 cut(s) 86, 97, 144, 158
StyD4I CCNGG 1 cut(s) 127
TasI AATT 1 cut(s) 221
TauI GCSGC 2 cut(s) 99, 146
TfiI GAWTC 1 cut(s) 176
TseI GCWGC 3 cut(s) 5, 8, 11
TspDTI ATGAA 1 cut(s) 80
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.