Prupe.3G085400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012072
Physical Location & Seq
Forward (+)
6293378 .. 6297119
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G085400.1

Sequence Viewer

Length: 405 bp
ATGGCAGTGGCAGCAACTCTCCTTCCCTCAACACCATACAAGCCATTACCACTCCCCCTCCCAAACTCTCTCTTCCTCCTCTCCTTCTCAATCCCCTGCACCCGCCATCACTTCACCCCTCCTGCCTCCGCCAATCGCGCCTCCCCCTTCCCGCTTCATCCCCGCCGTCCATATGTCGCTCTTCCTTCTAGTCCCGGCCGTTGCTTTGCCGCCAATTCGGGGCCGCCTCTGCCTCCCCCAGAATCTGACTCCACTAGCCTCACAGGTCTTGTAGCATCTTTCTCCAAGTTTCAGGACAAAGTGCAGATCTTTTTTGCTGTTCTTTTTTGGATGTCTCTTTTCTTCTGGGCTTCTGTATGGGATGAAAGGAGTCGACCAAACAAGGGCTCACGATTTAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.87

Weight (kDa)

10.63

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 373
AccII CGCG 1 cut(s) 138
AciI CCGC 6 cut(s) 103, 129, 152, 163, 210, 224
AcoI YGGCCR 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 219, 383
Alw26I GTCTC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 196, 221
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 106
BanII GRGCYC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 114
BceAI ACGGC 2 cut(s) 150, 183
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 189, 255
BglII AGATCT 1 cut(s) 306
BisI GCNGC 3 cut(s) 12, 210, 224
BlsI GCNGC 3 cut(s) 13, 211, 225
Bme1390I CCNGG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 383
BseGI GGATG 3 cut(s) 157, 336, 367
BseLI CCNNNNNNNGG 2 cut(s) 219, 383
BseRI GAGGAG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 82, 323
Bsh1236I CGCG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 2 cut(s) 198, 223
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 219, 383
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 2 cut(s) 198, 223
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 6 cut(s) 103, 129, 152, 163, 210, 224
BspANI GGCC 2 cut(s) 198, 223
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 186
BssMI GATC 1 cut(s) 306
Bst6I CTCTTC 2 cut(s) 77, 186
BstF5I GGATG 3 cut(s) 157, 336, 367
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 306
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 11, 137, 229
BstSCI CCNGG 1 cut(s) 193
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BstZI CGGCCG 1 cut(s) 196
BsuRI GGCC 2 cut(s) 198, 223
BtsCI GGATG 3 cut(s) 157, 336, 367
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 221
CviJI RGCY 6 cut(s) 43, 198, 223, 258, 350, 387
CviKI_1 RGCY 6 cut(s) 43, 198, 223, 258, 350, 387
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 196
EagI CGGCCG 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 77, 186
EarI CTCTTC 2 cut(s) 77, 186
EciI GGCGGA 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 389
Eco52I CGGCCG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 389
FaiI YATR 4 cut(s) 37, 172, 174, 358
FaqI GGGAC 1 cut(s) 177
FauI CCCGC 3 cut(s) 110, 159, 170
FauNDI CATATG 1 cut(s) 172
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 12, 210, 224
FokI GGATG 3 cut(s) 144, 343, 374
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 12, 210, 224
FspBI CTAG 2 cut(s) 189, 255
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 12, 210, 224
HaeIII GGCC 2 cut(s) 198, 223
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 140
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 374
HindII GTYRAC 1 cut(s) 374
HinfI GANTC 3 cut(s) 242, 248, 370
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 293, 390
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 32, 94, 157, 195
HpyCH4V TGCA 2 cut(s) 99, 304
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 137, 229
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 306
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 109, 135, 208, 249, 252, 278, 331
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 284
MaeI CTAG 2 cut(s) 189, 255
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 3 cut(s) 64, 173, 334
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 1 cut(s) 214
MlyI GAGTC 2 cut(s) 242, 379
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 11, 137, 229
NciI CCSGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 172
NdeII GATC 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 13, 211, 225
PleI GAGTC 2 cut(s) 242, 378
PpsI GAGTC 2 cut(s) 242, 378
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 306
SalI GTCGAC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 186
SatI GCNGC 3 cut(s) 12, 210, 224
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 242, 379
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 389
SetI ASST 1 cut(s) 268
SfaNI GCATC 1 cut(s) 284
Sse9I AATT 1 cut(s) 214
SsiI CCGC 6 cut(s) 103, 129, 152, 163, 210, 224
SspMI CTAG 2 cut(s) 189, 255
StyD4I CCNGG 1 cut(s) 193
TaqI TCGA 1 cut(s) 373
TasI AATT 1 cut(s) 214
TauI GCSGC 2 cut(s) 212, 226
TfiI GAWTC 1 cut(s) 242
TscAI CASTG 1 cut(s) 12
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 146, 378
TspRI CASTG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 2 cut(s) 189, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.