Rorug02G0326200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012072
Physical Location & Seq
Reverse (-)
40007757 .. 40008371
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0326200.1

Sequence Viewer

Length: 615 bp
ATGGCGGACAAGCTCATTTGGATGCCTTCATCAATTGGTGAGTTAACGGCAAAGCATGCTTATCAATTTTTGAGGCATCCATCTCCCTCCCAGCCTTGGTGTAAGACTTTACGGTCTAAATTTATATTGCCTAGAATGTCTCTACATGCCTGGAAAGTATTAAAAGGGAGAATAATTTGTGATGATCTTCTTCAAAGATGGGGAGTGGCTTGGGTTTCAAGATGTGAAATTTGTGGTGCATGTACTGAATCCCTACAGCATATATTCTTGCTTTGTCCTTTTACAACTGCTATATGGTCTTATTTCTCGTCTCTTTTTGAATTGGGTGTTGTTCCTCATACTCTTATGGATATATTTCACAAGGGTTTGAGTATGGGACGTTGTTCACAGCTTAAAGAGCTTTGGTTGATCACTTTCACATCGATCTTATGGTTTGTATGGCATGCTAGGAACAAGACCAGATTTGACTGCAAGTCGTTTTCTACTGCTTCAATTTGTCAACTCATTTTGGGTCATGTTAGAGCGGCTAGTCGGCCTGCAAAGGGTCCAATGAGTAATTCAGTTCAAGATCTTCGAGTGTTTTGGAGCAGAGTGTCAGTTGCGGAGAGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.4

Weight (kDa)

9.61

Isoelectric Point (pI)

65.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 16 - 99 9.8e-18 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 524
AciI CCGC 3 cut(s) 5, 524, 602
AcsI RAATTY 2 cut(s) 119, 228
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 96, 542
AgsI TTSAA 5 cut(s) 194, 219, 320, 492, 566
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 541, 573
AluBI AGCT 3 cut(s) 13, 391, 400
AluI AGCT 3 cut(s) 13, 391, 400
Alw26I GTCTC 2 cut(s) 144, 315
AoxI GGCC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 119, 228
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 611
BccI CCATC 2 cut(s) 88, 192
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 144, 315
BfaI CTAG 3 cut(s) 132, 447, 528
BfmI CTRYAG 1 cut(s) 254
BglII AGATCT 1 cut(s) 568
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 12, 85
Bsa29I ATCGAT 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 542
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 27, 76
BseLI CCNNNNNNNGG 2 cut(s) 96, 542
BseYI CCCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 535
BshVI ATCGAT 1 cut(s) 422
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 96, 542
BsmAI GTCTC 2 cut(s) 144, 315
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 4 cut(s) 184, 408, 423, 568
BspACI CCGC 3 cut(s) 5, 524, 602
BspANI GGCC 1 cut(s) 535
BspDI ATCGAT 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 4 cut(s) 184, 408, 423, 568
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 57, 444, 537
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 27, 76
BstKTI GATC 4 cut(s) 187, 411, 426, 571
BstMAI GTCTC 2 cut(s) 144, 315
BstMBI GATC 4 cut(s) 184, 408, 423, 568
BstMWI GCNNNNNNNGC 2 cut(s) 56, 397
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 4 cut(s) 59, 149, 243, 446
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu15I ATCGAT 1 cut(s) 422
BsuRI GGCC 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 422
BtsCI GGATG 2 cut(s) 27, 76
Cac8I GCNNGC 3 cut(s) 57, 444, 537
Cfr13I GGNCC 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 422
Csp6I GTAC 1 cut(s) 243
CviAII CATG 5 cut(s) 56, 146, 240, 443, 515
CviJI RGCY 8 cut(s) 13, 94, 209, 391, 400, 527, 535, 609
CviKI_1 RGCY 8 cut(s) 13, 94, 209, 391, 400, 527, 535, 609
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 612
DpnI GATC 4 cut(s) 186, 410, 425, 570
DpnII GATC 4 cut(s) 184, 408, 423, 568
DrdI GACNNNNNNGTC 1 cut(s) 112
DriI GACNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 472
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 5 cut(s) 59, 149, 243, 446, 518
FaqI GGGAC 1 cut(s) 390
FatI CATG 5 cut(s) 55, 145, 239, 442, 514
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 2 cut(s) 34, 63
FriOI GRGCYC 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 3 cut(s) 132, 447, 528
GluI GCNGC 1 cut(s) 525
GsaI CCCAGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 535
Hin1II CATG 5 cut(s) 59, 149, 243, 446, 518
HincII GTYRAC 2 cut(s) 45, 500
HindII GTYRAC 2 cut(s) 45, 500
HinfI GANTC 1 cut(s) 248
HpaI GTTAAC 1 cut(s) 45
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 3 cut(s) 45, 386, 500
Hpy188III TCNNGA 2 cut(s) 219, 566
Hpy8I GTNNAC 3 cut(s) 45, 386, 500
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 239, 471, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 397
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 5 cut(s) 59, 149, 243, 446, 518
Ksp22I TGATCA 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 45
Kzo9I GATC 4 cut(s) 184, 408, 423, 568
LmnI GCTCC 1 cut(s) 585
LpnPI CCDG 5 cut(s) 104, 136, 163, 472, 549
LweI GCATC 2 cut(s) 12, 85
MaeI CTAG 3 cut(s) 132, 447, 528
MaeII ACGT 1 cut(s) 379
MalI GATC 4 cut(s) 186, 410, 425, 570
MbiI CCGCTC 1 cut(s) 524
MboI GATC 4 cut(s) 184, 408, 423, 568
MboII GAAGA 3 cut(s) 179, 182, 563
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 8 cut(s) 33, 65, 119, 174, 228, 320, 492, 556
MnlI CCTC 3 cut(s) 66, 97, 345
MseI TTAA 3 cut(s) 44, 161, 393
MslI CAYNNNNRTG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 56, 397
NdeII GATC 4 cut(s) 184, 408, 423, 568
NlaIII CATG 5 cut(s) 59, 149, 243, 446, 518
NlaIV GGNNCC 1 cut(s) 546
NspI RCATGY 4 cut(s) 59, 149, 243, 446
PaeI GCATGC 2 cut(s) 59, 446
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 1 cut(s) 545
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 3 cut(s) 44, 161, 393
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 4 cut(s) 184, 408, 423, 568
Sau96I GGNCC 1 cut(s) 545
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 611
SetI ASST 4 cut(s) 15, 382, 393, 402
SfaNI GCATC 2 cut(s) 12, 85
SfcI CTRYAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 20
SphI GCATGC 2 cut(s) 59, 446
Sse9I AATT 8 cut(s) 33, 65, 119, 174, 228, 320, 492, 556
SsiI CCGC 3 cut(s) 5, 524, 602
SspMI CTAG 3 cut(s) 132, 447, 528
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 422, 574
TasI AATT 8 cut(s) 33, 65, 119, 174, 228, 320, 492, 556
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 44, 161, 393
Tru9I TTAA 3 cut(s) 44, 161, 393
TspDTI ATGAA 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 2 cut(s) 119, 228
XceI RCATGY 4 cut(s) 59, 149, 243, 446
XspI CTAG 3 cut(s) 132, 447, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.