RLG00000019481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012072
Physical Location & Seq
Reverse (-)
52539281 .. 52543465
4185 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019481

Sequence Viewer

Length: 354 bp
ATGGCAGCAGCAGCAACAACTCTCTTCCTCAAACTTTCCTTCACCCGTCATCACTTCACCCCTCCTCCTCCTCCTCTTCCTACTTCCACCAATCCCTTCCCGCTTCATCGCCGCCGGTCATCGGGTTCTCTTCCTCGCAATCCCGGCCGTTGCCTCGCCGCCAACTCGGGACCGCCTCAGCCTCCTCCGGAATCTGACCAGACTCAGCTCTCAGGTCTTGCTGGATCTTTGTCCCAATTTCAGGACAAAGTGCACATCTTCTTTGCTGTTCTTTTTTGGATGTCTCTGTTCTTCTGGGCTTCTGTATGGGACGACAGGGATAGACCTAACAAGGGCTCACGATTTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.16

Weight (kDa)

11.59

Isoelectric Point (pI)

67.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 4 cut(s) 101, 112, 159, 173
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 145
AfiI CCNNNNNNNGG 3 cut(s) 121, 241, 332
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 166
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 1 cut(s) 145
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 3 cut(s) 5, 8, 11
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 34, 49
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 17, 20, 23
BceAI ACGGC 1 cut(s) 132
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 288
BisI GCNGC 5 cut(s) 6, 9, 12, 112, 159
BlsI GCNGC 5 cut(s) 7, 10, 13, 113, 160
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 241, 332
Bse118I RCCGGY 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 187
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 121, 241, 332
BseMII CTCAG 3 cut(s) 191, 218, 225
BseRI GAGGAG 5 cut(s) 54, 57, 60, 63, 174
BseSI GKGCMC 1 cut(s) 255
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 3 cut(s) 17, 20, 23
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 3 cut(s) 115, 144, 188
BslFI GGGAC 3 cut(s) 183, 217, 323
BslI CCNNNNNNNGG 3 cut(s) 121, 241, 332
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 3 cut(s) 183, 217, 323
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 255, 338
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 4 cut(s) 101, 112, 159, 173
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 190, 217, 224
BspEI TCCGGA 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 1 cut(s) 224
Bst6I CTCTTC 3 cut(s) 29, 81, 135
BstDEI CTNAG 3 cut(s) 177, 204, 211
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 224
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 11, 144
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 17, 20, 23
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 170
CviJI RGCY 5 cut(s) 147, 181, 208, 299, 336
CviKI_1 RGCY 5 cut(s) 147, 181, 208, 299, 336
DdeI CTNAG 3 cut(s) 177, 204, 211
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 29, 81, 135
EarI CTCTTC 3 cut(s) 29, 81, 135
EclXI CGGCCG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 338
FaiI YATR 1 cut(s) 307
FaqI GGGAC 3 cut(s) 183, 217, 323
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 112, 159
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 112, 159
GluI GCNGC 5 cut(s) 6, 9, 12, 112, 159
HaeIII GGCC 1 cut(s) 147
HapII CCGG 3 cut(s) 115, 144, 188
HinfI GANTC 2 cut(s) 191, 202
HpaII CCGG 3 cut(s) 115, 144, 188
HphI GGTGA 2 cut(s) 34, 49
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 4 cut(s) 168, 188, 242, 339
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 49, 106
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 144
HpyF3I CTNAG 3 cut(s) 177, 204, 211
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 224
LpnPI CCDG 9 cut(s) 128, 157, 198, 201, 207, 212, 227, 280, 301
Lsp1109I GCAGC 3 cut(s) 17, 20, 23
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 5 cut(s) 16, 68, 122, 250, 283
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 255, 338
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 196
MroI TCCGGA 1 cut(s) 187
MspI CCGG 3 cut(s) 115, 144, 188
MspR9I CCNGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 11, 144
NciI CCSGG 1 cut(s) 144
NdeII GATC 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 5 cut(s) 7, 10, 13, 113, 160
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 224
SatI GCNGC 5 cut(s) 6, 9, 12, 112, 159
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 255, 338
SetI ASST 3 cut(s) 210, 217, 328
SinI GGWCC 1 cut(s) 170
Sse9I AATT 1 cut(s) 236
SsiI CCGC 4 cut(s) 101, 112, 159, 173
StyD4I CCNGG 1 cut(s) 142
TasI AATT 1 cut(s) 236
TauI GCSGC 2 cut(s) 114, 161
TfiI GAWTC 1 cut(s) 191
TseI GCWGC 3 cut(s) 5, 8, 11
TspDTI ATGAA 1 cut(s) 95
VneI GTGCAC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.