pycom17g21540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012072
Physical Location & Seq
Forward (+)
19923175 .. 19926461
3287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21540.1

Sequence Viewer

Length: 414 bp
ATGGCAGCAGCAACTCTACTTCCCTCGACACCATTTCACTACACAAACCGGCCATTACCACTCCCCCGCCCAAACTCCCTCTTCTTCTCCTCCTTCTCAAACCCCTCCGCCGGCCACCACTTCCCTCGTCCTACTTCCGCCGATCACGTCTCCCCCTTTCCGTTTCATCCCCGCCGTCCATCCGTCTCTCTTTATTCTCGTCCCGGCCGTTGCCTTGCCGCCCAACCAGGACCGCATCTCCCTCCCCCGGATTCTGACTCGACCAGTCTCGCAGGTCTTGCAGCATCTTTCTCCAAATTTCAGGACAAAGTACAGATCTTCTTTGCTGTTCTTTTTTGGATGTCTCTTTTCTTCTGGGCTTCTGTGTGGGATGAAAGGAGTCGACCAGACAAGGGCTCACGATTTAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

10.86

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 382
AciI CCGC 6 cut(s) 67, 108, 138, 172, 219, 233
AcoI YGGCCR 3 cut(s) 50, 112, 205
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 110, 247, 392
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 226
Alw26I GTCTC 4 cut(s) 154, 190, 272, 348
AoxI GGCC 3 cut(s) 50, 112, 205
ApeKI GCWGC 3 cut(s) 5, 8, 281
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 204, 248
AvaII GGWCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 17, 20, 293
BccI CCATC 1 cut(s) 187
BceAI ACGGC 2 cut(s) 159, 192
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 2 cut(s) 204, 248
BcoDI GTCTC 4 cut(s) 154, 190, 272, 348
BfuAI ACCTGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 315
BisI GCNGC 4 cut(s) 6, 9, 219, 282
BlsI GCNGC 4 cut(s) 7, 10, 220, 283
Bme1390I CCNGG 3 cut(s) 204, 228, 248
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 3 cut(s) 204, 228, 248
BmsI GCATC 2 cut(s) 244, 293
BpuMI CCSGG 2 cut(s) 204, 248
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 247, 392
Bse118I RCCGGY 2 cut(s) 48, 110
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 4 cut(s) 166, 179, 345, 376
BseLI CCNNNNNNNGG 3 cut(s) 110, 247, 392
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 79
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 17, 20, 293
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 52, 114, 207
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 4 cut(s) 49, 111, 204, 248
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 110, 247, 392
BsmAI GTCTC 4 cut(s) 154, 190, 272, 348
BsmBI CGTCTC 2 cut(s) 154, 190
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 3 cut(s) 52, 114, 207
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 2 cut(s) 142, 315
BspACI CCGC 6 cut(s) 67, 108, 138, 172, 219, 233
BspANI GGCC 3 cut(s) 52, 114, 207
BspMI ACCTGC 1 cut(s) 263
BsrFI RCCGGY 2 cut(s) 48, 110
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 2 cut(s) 48, 110
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 142, 315
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 4 cut(s) 166, 179, 345, 376
BstKTI GATC 2 cut(s) 145, 318
BstMAI GTCTC 4 cut(s) 154, 190, 272, 348
BstMBI GATC 2 cut(s) 142, 315
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 202, 226, 246
BstV1I GCAGC 3 cut(s) 17, 20, 293
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 3 cut(s) 52, 114, 207
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 4 cut(s) 166, 179, 345, 376
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 48, 110
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 311
CviJI RGCY 5 cut(s) 52, 114, 207, 359, 396
CviKI_1 RGCY 5 cut(s) 52, 114, 207, 359, 396
CviQI GTAC 1 cut(s) 311
DpnI GATC 2 cut(s) 144, 317
DpnII GATC 2 cut(s) 142, 315
EaeI YGGCCR 3 cut(s) 50, 112, 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 2 cut(s) 97, 127
EclXI CGGCCG 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 398
Esp3I CGTCTC 2 cut(s) 154, 190
FaqI GGGAC 1 cut(s) 186
FauI CCCGC 2 cut(s) 74, 179
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 6, 9, 219, 282
FokI GGATG 4 cut(s) 153, 166, 352, 383
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 4 cut(s) 6, 9, 219, 282
GluI GCNGC 4 cut(s) 6, 9, 219, 282
HaeIII GGCC 3 cut(s) 52, 114, 207
HapII CCGG 4 cut(s) 49, 111, 204, 248
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HinfI GANTC 3 cut(s) 251, 257, 379
HpaII CCGG 4 cut(s) 49, 111, 204, 248
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 302, 399
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 147
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 142, 315
Lsp1109I GCAGC 3 cut(s) 17, 20, 293
LweI GCATC 2 cut(s) 244, 293
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 144, 317
MboI GATC 2 cut(s) 142, 315
MboII GAAGA 4 cut(s) 73, 76, 310, 343
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 1 cut(s) 296
MlyI GAGTC 2 cut(s) 251, 388
MnlI CCTC 6 cut(s) 34, 89, 100, 115, 135, 252
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 4 cut(s) 49, 111, 204, 248
MspR9I CCNGG 3 cut(s) 204, 228, 248
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 278
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 204, 248
NdeII GATC 2 cut(s) 142, 315
NgoMIV GCCGGC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 4 cut(s) 7, 10, 220, 283
PleI GAGTC 2 cut(s) 251, 387
PpsI GAGTC 2 cut(s) 251, 387
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SalI GTCGAC 1 cut(s) 381
SatI GCNGC 4 cut(s) 6, 9, 219, 282
Sau3AI GATC 2 cut(s) 142, 315
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 2 cut(s) 251, 388
ScrFI CCNGG 3 cut(s) 204, 228, 248
SduI GDGCHC 1 cut(s) 398
SetI ASST 2 cut(s) 150, 277
SfaNI GCATC 2 cut(s) 244, 293
SinI GGWCC 1 cut(s) 230
Sse9I AATT 1 cut(s) 296
SsiI CCGC 6 cut(s) 67, 108, 138, 172, 219, 233
StyD4I CCNGG 3 cut(s) 202, 226, 246
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 26, 260, 382
TasI AATT 1 cut(s) 296
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 251
TseI GCWGC 3 cut(s) 5, 8, 281
TspDTI ATGAA 2 cut(s) 155, 387
TspGWI ACGGA 2 cut(s) 150, 172
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.