FvH4_6g29860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012072
Physical Location & Seq
Reverse (-)
23065369 .. 23069328
3960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29860.t1

Sequence Viewer

Length: 351 bp
ATGGCGGCAGCAGCAGCAGCAACAACTCTCTTCCTCAAACTCTCCTTCACCCGTCATCACTTCACTCCTCCTCCTCCTACTCCCGCCAATCCCTTCCCGCTTCATCCCCGCCGTTCATCGGGTTGTCTTTCTCGCAATCCCGGCCGTTGCCTCGCCGCCAAATCGGGACCTCCCTTGCCTCCTCCGGAATCCGACCAGAATCAGCTCACAGGTCTTGCAGGATCTTTGTCTGAATTTCAGGACAAAGTGCACATCTTCTTTGCTGTTCTTTTTTGGATGTCTCTGTTCTTCTGGGCTTCTGTATGGGACGACAAGGATAGACTGAACAAGGGCTCACGGTTTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.93

Weight (kDa)

10.5

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52550 AT3G15780
fragaria_vesca FvH4_6g29860
malus_domestica MD17G1210100.v1.1
prunus_persica Prupe.3G085400_v2.0.a1
pyrus_communis pycom17g21540
rosa_chinensis RchiOBHm_Chr2g0135741
rosa_laevigata RLG00000019481
rosa_roxburghii Rroxscaffold_2G00108960
rosa_rugosa Rorug02G0326000 Rorug02G0326100 Rorug02G0326200 Rorug03G0131000 Rorug07G0223200
rosa_samantha Rh2AG377700 Rh2BG384000 Rh2CG363300 Rh2DG400500
rosa_wichuraiana Rw2G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 5 cut(s) 5, 84, 98, 109, 156
AclWI GGATC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 248
AlwI GGATC 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 248
ApeKI GCWGC 4 cut(s) 8, 11, 14, 17
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 4 cut(s) 20, 23, 26, 29
BceAI ACGGC 2 cut(s) 96, 129
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 285
BisI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 156
BlsI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 157
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 2 cut(s) 103, 282
BseLI CCNNNNNNNGG 1 cut(s) 118
BseRI GAGGAG 4 cut(s) 57, 60, 63, 171
BseSI GKGCMC 1 cut(s) 252
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 20, 23, 26, 29
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 141, 185
BslFI GGGAC 2 cut(s) 180, 320
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 2 cut(s) 180, 320
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 252, 335
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 5 cut(s) 5, 84, 98, 109, 156
BspANI GGCC 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 229
BssMI GATC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 35
BstF5I GGATG 2 cut(s) 103, 282
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 221
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 17, 141
BstSCI CCNGG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 252
BstV1I GCAGC 4 cut(s) 20, 23, 26, 29
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 103, 282
Cfr13I GGNCC 1 cut(s) 167
CviJI RGCY 4 cut(s) 144, 205, 296, 333
CviKI_1 RGCY 4 cut(s) 144, 205, 296, 333
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EclXI CGGCCG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 167
Eco52I CGGCCG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 335
FaiI YATR 1 cut(s) 304
FaqI GGGAC 2 cut(s) 180, 320
FauI CCCGC 3 cut(s) 91, 105, 116
Fnu4HI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 156
FokI GGATG 2 cut(s) 90, 289
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 156
GluI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 156
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 141, 185
HinfI GANTC 2 cut(s) 188, 199
HpaII CCGG 2 cut(s) 141, 185
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 193, 232
Hpy188III TCNNGA 3 cut(s) 165, 185, 239
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 55, 103
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 218, 250
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 17, 141
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 1 cut(s) 221
LpnPI CCDG 7 cut(s) 154, 195, 198, 204, 209, 224, 277
Lsp1109I GCAGC 4 cut(s) 20, 23, 26, 29
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 3 cut(s) 22, 247, 280
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 252, 335
MluCI AATT 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 8 cut(s) 44, 78, 81, 84, 161, 180, 189, 192
MroI TCCGGA 1 cut(s) 184
MspI CCGG 2 cut(s) 141, 185
MspR9I CCNGG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 17, 141
NciI CCSGG 1 cut(s) 141
NdeII GATC 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 188, 199
PkrI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 157
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
PsuI RGATCY 1 cut(s) 221
SatI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 156
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 2 cut(s) 252, 335
SetI ASST 3 cut(s) 172, 207, 214
SinI GGWCC 1 cut(s) 167
Sse9I AATT 1 cut(s) 233
SsiI CCGC 5 cut(s) 5, 84, 98, 109, 156
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 339
TasI AATT 1 cut(s) 233
TauI GCSGC 2 cut(s) 8, 158
TfiI GAWTC 2 cut(s) 188, 199
TseI GCWGC 4 cut(s) 8, 11, 14, 17
TspDTI ATGAA 2 cut(s) 92, 105
VneI GTGCAC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.