Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Forward (+)

19640525 .. 19641665

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTTTGATTATCACCTGCTCCGCTCTACCCACGATCCGAGCATCTTCCGGATCCGGATCCCTTAACCCGGATCAAAACCGTAAGAAATCTGCTGCTTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGATCCAGATTACCTCAACATCGAAAGCTCATGCTCCACCGTGAATCCGGATAAAACCGATATTTCCGGGTCGGGTCAAAAGTTTCGTCGCGGTTGTTTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACCGCAGAAGCTTCCACGTTCCATGACGTAATGTATCACTCCGCCATTGCTTCTCGACTTGCGTCTGATATCACCGGCCGAGTCGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.74

Weight (kDa)

8.52

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	26
AccII	CGCG	1 cut(s)	219
AccIII	TCCGGA	3 cut(s)	50, 56, 175
AciI	CCGC	4 cut(s)	24, 219, 264, 303
AclWI	GGATC	7 cut(s)	31, 48, 54, 61, 67, 81, 125
AcoI	YGGCCR	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	70, 116, 346
AluBI	AGCT	3 cut(s)	156, 242, 272
AluI	AGCT	3 cut(s)	156, 242, 272
AlwI	GGATC	7 cut(s)	31, 48, 54, 61, 67, 81, 125
Aor13HI	TCCGGA	3 cut(s)	50, 56, 175
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	95
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AsuC2I	CCSGG	2 cut(s)	71, 196
AsuHPI	GGTGA	2 cut(s)	7, 325
BamHI	GGATCC	2 cut(s)	53, 59
BanII	GRGCYC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	82
BcnI	CCSGG	2 cut(s)	71, 196
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	96
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	71, 196
BmiI	GGNNCC	3 cut(s)	55, 61, 108
BmrFI	CCNGG	2 cut(s)	71, 196
BmsI	GCATC	1 cut(s)	53
BoxI	GACNNNNGTC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	71, 196
BsaBI	GATNNNNATC	1 cut(s)	58
BsaWI	WCCGGW	3 cut(s)	50, 56, 175
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 116, 346
Bse118I	RCCGGY	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	58
BseAI	TCCGGA	3 cut(s)	50, 56, 175
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	70, 116, 346
BseMI	GCAATG	1 cut(s)	306
BseRI	GAGGAG	3 cut(s)	99, 248, 268
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	6 cut(s)	51, 57, 71, 176, 195, 336
BslI	CCNNNNNNNGG	3 cut(s)	70, 116, 346
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp13I	TCCGGA	3 cut(s)	50, 56, 175
Bsp143I	GATC	5 cut(s)	36, 53, 59, 73, 130
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	4 cut(s)	24, 219, 264, 303
BspANI	GGCC	1 cut(s)	339
BspEI	TCCGGA	3 cut(s)	50, 56, 175
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	55, 61, 108
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	7 cut(s)	31, 48, 54, 61, 67, 81, 125
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssMI	GATC	5 cut(s)	36, 53, 59, 73, 130
Bst4CI	ACNGT	2 cut(s)	83, 169
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	5 cut(s)	39, 56, 62, 76, 133
BstMBI	GATC	5 cut(s)	36, 53, 59, 73, 130
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	69, 194
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	53, 59
BstYI	RGATCY	2 cut(s)	53, 59
BstZI	CGGCCG	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	335
CseI	GACGC	1 cut(s)	312
CviAII	CATG	2 cut(s)	159, 284
CviJI	RGCY	6 cut(s)	5, 107, 156, 242, 272, 339
CviKI_1	RGCY	6 cut(s)	5, 107, 156, 242, 272, 339
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	5 cut(s)	38, 55, 61, 75, 132
DpnII	GATC	5 cut(s)	36, 53, 59, 73, 130
EaeI	YGGCCR	1 cut(s)	337
EagI	CGGCCG	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	331
Eco52I	CGGCCG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	162, 287
FaiI	YATR	2 cut(s)	160, 285
FatI	CATG	2 cut(s)	158, 283
Fnu4HI	GCNGC	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	6 cut(s)	51, 57, 71, 176, 195, 336
HgaI	GACGC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	162, 287
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	2 cut(s)	172, 342
HpaII	CCGG	6 cut(s)	51, 57, 71, 176, 195, 336
HphI	GGTGA	2 cut(s)	7, 325
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	41, 130, 328
Hpy188III	TCNNGA	5 cut(s)	51, 57, 134, 176, 315
Hpy8I	GTNNAC	1 cut(s)	122
Hpy99I	CGWCG	1 cut(s)	219
HpyCH4III	ACNGT	2 cut(s)	83, 169
HpyCH4IV	ACGT	2 cut(s)	278, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	278, 288
Hsp92II	CATG	2 cut(s)	162, 287
Kpn2I	TCCGGA	3 cut(s)	50, 56, 175
Kzo9I	GATC	5 cut(s)	36, 53, 59, 73, 130
LmnI	GCTCC	3 cut(s)	26, 112, 167
LpnPI	CCDG	8 cut(s)	31, 64, 70, 84, 147, 189, 208, 349
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	2 cut(s)	278, 288
MalI	GATC	5 cut(s)	38, 55, 61, 75, 132
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	5 cut(s)	36, 53, 59, 73, 130
MboII	GAAGA	2 cut(s)	39, 106
MflI	RGATCY	2 cut(s)	53, 59
MhlI	GDGCHC	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	120, 136, 152, 226, 246, 249, 340
MroI	TCCGGA	3 cut(s)	50, 56, 175
MseI	TTAA	1 cut(s)	66
MspI	CCGG	6 cut(s)	51, 57, 71, 176, 195, 336
MspR9I	CCNGG	2 cut(s)	71, 196
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	2 cut(s)	71, 196
NdeII	GATC	5 cut(s)	36, 53, 59, 73, 130
NlaIII	CATG	2 cut(s)	162, 287
NlaIV	GGNNCC	3 cut(s)	55, 61, 108
PaqCI	CACCTGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PshAI	GACNNNNGTC	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	55, 61, 108
PsuI	RGATCY	2 cut(s)	53, 59
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	5 cut(s)	36, 53, 59, 73, 130
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	71, 196
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	20, 144, 158, 244, 274, 281, 291
SfaNI	GCATC	1 cut(s)	53
SsiI	CCGC	4 cut(s)	24, 219, 264, 303
StyD4I	CCNGG	2 cut(s)	69, 194
TaaI	ACNGT	2 cut(s)	83, 169
TaiI	ACGT	2 cut(s)	281, 291
TaqI	TCGA	3 cut(s)	150, 316, 345
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.