Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Reverse (-)

55563762 .. 55564121

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACGACTCCTCTCACGGCTTTCCGACCCGTTTCGATCCGAGCCGACGCCTCCGCCTCCCACAAACCCGACCCGAATCGCCGCAACAAGCCCGCCAACTCCAACTGGTGGGCCCCGCTCTTCGGCATGTCGTCCGACCCGGACTACATCACGGGCGCTCCTCCGCCGCAGAATCTCAGTACGGCTCCGGATTCCGGGCGCGACCCGAACCGGCCCGGGTCCAGATTCGCGCTGGGTTGCTTCACGGAAGAGAAGGCGAAGCAGCTCCGGAAGAAGACGCTGGAGACCTCCGCATTCCACGATATCATGTACCACTCCGCCATTGCGTCTCGGCTCGCCTCTGATTTGTCGGACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

9.3

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccBSI	CCGCTC	1 cut(s)	118
AccII	CGCG	2 cut(s)	201, 230
AccIII	TCCGGA	2 cut(s)	187, 267
AciI	CCGC	8 cut(s)	54, 82, 93, 116, 164, 167, 291, 318
AclWI	GGATC	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	181, 311
AfiI	CCNNNNNNNGG	3 cut(s)	108, 122, 194
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	278, 333
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	215
Aor13HI	TCCGGA	2 cut(s)	187, 267
AoxI	GGCC	2 cut(s)	111, 212
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	262
AspLEI	GCGC	3 cut(s)	158, 201, 232
AspS9I	GGNCC	5 cut(s)	111, 112, 213, 219, 352
AsuC2I	CCSGG	4 cut(s)	140, 196, 216, 217
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	219, 352
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	274
BceAI	ACGGC	2 cut(s)	33, 198
BcnI	CCSGG	4 cut(s)	140, 196, 216, 217
BcoDI	GTCTC	2 cut(s)	278, 333
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	3 cut(s)	82, 167, 263
BlsI	GCNGC	3 cut(s)	83, 168, 264
Bme1390I	CCNGG	4 cut(s)	140, 196, 216, 217
Bme18I	GGWCC	2 cut(s)	219, 352
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	5 cut(s)	111, 112, 213, 219, 352
BmiI	GGNNCC	4 cut(s)	113, 114, 186, 220
BmrFI	CCNGG	4 cut(s)	140, 196, 216, 217
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	302
BpuMI	CCSGG	4 cut(s)	140, 196, 216, 217
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	2 cut(s)	187, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 122, 194
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	110, 355
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	2 cut(s)	187, 267
BseDI	CCNNGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	3 cut(s)	108, 122, 194
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	110, 355
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	2 cut(s)	201, 230
BshFI	GGCC	2 cut(s)	113, 214
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	6 cut(s)	140, 188, 195, 211, 216, 268
BslI	CCNNNNNNNGG	3 cut(s)	108, 122, 194
BsmAI	GTCTC	2 cut(s)	278, 333
BsmBI	CGTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	113, 214
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	215
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp13I	TCCGGA	2 cut(s)	187, 267
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	8 cut(s)	54, 82, 93, 116, 164, 167, 291, 318
BspANI	GGCC	2 cut(s)	113, 214
BspCNI	CTCAG	1 cut(s)	189
BspEI	TCCGGA	2 cut(s)	187, 267
BspFNI	CGCG	2 cut(s)	201, 230
BspLI	GGNNCC	4 cut(s)	113, 114, 186, 220
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	110, 355
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	125, 243
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	93, 336
BstDEI	CTNAG	1 cut(s)	176
BstFNI	CGCG	2 cut(s)	201, 230
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	158, 201, 232
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	278, 333
BstMBI	GATC	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	4 cut(s)	138, 194, 214, 215
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	2 cut(s)	201, 230
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	113, 214
Cac8I	GCNNGC	2 cut(s)	93, 336
CfoI	GCGC	3 cut(s)	158, 201, 232
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	5 cut(s)	111, 112, 213, 219, 352
Cfr9I	CCCGGG	1 cut(s)	215
CseI	GACGC	3 cut(s)	56, 286, 315
Csp6I	GTAC	2 cut(s)	180, 310
CviAII	CATG	2 cut(s)	127, 307
CviJI	RGCY	8 cut(s)	20, 44, 91, 113, 185, 214, 265, 334
CviKI_1	RGCY	8 cut(s)	20, 44, 91, 113, 185, 214, 265, 334
CviQI	GTAC	2 cut(s)	180, 310
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	125, 243
EarI	CTCTTC	2 cut(s)	125, 243
EciI	GGCGGA	3 cut(s)	43, 153, 307
Eco24I	GRGCYC	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	219, 352
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	2 cut(s)	130, 310
FaiI	YATR	2 cut(s)	128, 308
FatI	CATG	2 cut(s)	126, 306
FauI	CCCGC	2 cut(s)	100, 123
Fnu4HI	GCNGC	3 cut(s)	82, 167, 263
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	82, 167, 263
GlaI	GCGC	3 cut(s)	157, 200, 231
GluI	GCNGC	3 cut(s)	82, 167, 263
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	113, 214
HapII	CCGG	6 cut(s)	140, 188, 195, 211, 216, 268
HgaI	GACGC	3 cut(s)	56, 286, 315
HhaI	GCGC	3 cut(s)	158, 201, 232
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	130, 310
Hin6I	GCGC	3 cut(s)	156, 199, 230
HinP1I	GCGC	3 cut(s)	156, 199, 230
HinfI	GANTC	5 cut(s)	7, 76, 172, 191, 225
HpaII	CCGG	6 cut(s)	140, 188, 195, 211, 216, 268
Hpy188I	TCNGA	5 cut(s)	26, 41, 136, 343, 352
Hpy188III	TCNNGA	3 cut(s)	188, 222, 268
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	130, 310
HspAI	GCGC	3 cut(s)	156, 199, 230
Kpn2I	TCCGGA	2 cut(s)	187, 267
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	3 cut(s)	163, 190, 270
Lsp1109I	GCAGC	1 cut(s)	274
MalI	GATC	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	1 cut(s)	36
MboII	GAAGA	4 cut(s)	112, 260, 283, 286
MhlI	GDGCHC	1 cut(s)	115
MmeI	TCCRAC	4 cut(s)	49, 126, 159, 330
MnlI	CCTC	6 cut(s)	21, 61, 67, 171, 298, 349
MroI	TCCGGA	2 cut(s)	187, 267
MspI	CCGG	6 cut(s)	140, 188, 195, 211, 216, 268
MspR9I	CCNGG	4 cut(s)	140, 196, 216, 217
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	2 cut(s)	201, 230
NciI	CCSGG	4 cut(s)	140, 196, 216, 217
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	130, 310
NlaIV	GGNNCC	4 cut(s)	113, 114, 186, 220
NmeAIII	GCCGAG	1 cut(s)	310
NspI	RCATGY	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	76, 172, 191, 225
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	83, 168, 264
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	4 cut(s)	113, 114, 186, 220
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	5 cut(s)	111, 112, 213, 219, 352
RsaI	GTAC	2 cut(s)	181, 311
RsaNI	GTAC	2 cut(s)	180, 310
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	3 cut(s)	82, 167, 263
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	5 cut(s)	111, 112, 213, 219, 352
ScrFI	CCNGG	4 cut(s)	140, 196, 216, 217
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	2 cut(s)	267, 290
SinI	GGWCC	2 cut(s)	219, 352
SmaI	CCCGGG	1 cut(s)	217
SsiI	CCGC	8 cut(s)	54, 82, 93, 116, 164, 167, 291, 318
StyD4I	CCNGG	4 cut(s)	138, 194, 214, 215
TaqI	TCGA	1 cut(s)	35
TauI	GCSGC	2 cut(s)	84, 169
TfiI	GAWTC	4 cut(s)	76, 172, 191, 225
TseI	GCWGC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	260
TspMI	CCCGGG	1 cut(s)	215
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	219, 352
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmaI	CCCGGG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.