pycom15g15930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004798
Physical Location & Seq
Reverse (-)
11101215 .. 11101801
587 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15930.2

Sequence Viewer

Length: 495 bp
ATGATCGCCACTAAAGAGACCGGAATAGCCGGTAAAATTATTCTTCAAAATCGGAATGCAACCTCCCCAAAACTGTCTACTGTTCATTTTGCTATTCCAAACTCCCAAAACCATCGTCTCTCTCTAAAAATGTCCACCAGTCTCATCCACTTCCGGCCAAACCTAGCTGCGCCATGCGCCGCTGGAAATCGAAAGTCCAGCTCAGTTGGCGGGAAAGGCTTGCCGTTCAAGTGGTGGACCCCGCTCTTCGGGTGGTCATCCGAACCCGACTACATTGACCCGGAGGCAAAGACAGAGTCAGACGACAAGGCCCAGGGCGGAGCAGCCGACTCGAAACCACGGCGATCGCGGTTCTCGCCTGGCTGCTTTACGGAGGAGAAGGCGCGGCAGCTCCGGATGAAGACGATCGAAACGGAGACGTTTCATGACGCCATGTACCACTCGTCGATCGCCACCAGACTCGCCTCCGATTTTAAGAACCGGTCCGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.15

Weight (kDa)

9.73

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 77
AccII CGCG 2 cut(s) 349, 385
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 6 cut(s) 180, 210, 242, 318, 349, 385
AcoI YGGCCR 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 248
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 2 cut(s) 47, 229
AjnI CCWGG 2 cut(s) 312, 358
AluBI AGCT 3 cut(s) 167, 201, 391
AluI AGCT 3 cut(s) 167, 201, 391
Alw26I GTCTC 4 cut(s) 11, 122, 146, 410
Aor13HI TCCGGA 1 cut(s) 393
AoxI GGCC 2 cut(s) 155, 309
ApeKI GCWGC 4 cut(s) 167, 323, 363, 388
ArsI GACNNNNNNTTYG 4 cut(s) 100, 132, 281, 313
AsiGI ACCGGT 1 cut(s) 480
AsiSI GCGATCGC 1 cut(s) 347
AspLEI GCGC 3 cut(s) 172, 179, 385
AspS9I GGNCC 3 cut(s) 237, 310, 483
AsuC2I CCSGG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 237, 483
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 4 cut(s) 154, 335, 350, 400
BccI CCATC 1 cut(s) 120
BceAI ACGGC 2 cut(s) 208, 356
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 2 cut(s) 314, 360
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 4 cut(s) 11, 122, 146, 410
BfaI CTAG 1 cut(s) 164
BisI GCNGC 6 cut(s) 168, 180, 324, 364, 386, 389
BlsI GCNGC 6 cut(s) 169, 181, 325, 365, 387, 390
Bme1390I CCNGG 3 cut(s) 281, 314, 360
Bme18I GGWCC 2 cut(s) 237, 483
BmgT120I GGNCC 3 cut(s) 237, 310, 483
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 3 cut(s) 281, 314, 360
BpiI GAAGAC 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 312, 313, 338
BsaWI WCCGGW 3 cut(s) 20, 393, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse118I RCCGGY 2 cut(s) 29, 480
Bse1I ACTGG 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 2 cut(s) 314, 360
BseDI CCNNGG 3 cut(s) 312, 313, 338
BseGI GGATG 3 cut(s) 144, 257, 402
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 4 cut(s) 154, 335, 350, 400
Bsh1236I CGCG 2 cut(s) 349, 385
Bsh1285I CGRYCG 3 cut(s) 347, 408, 450
BshFI GGCC 2 cut(s) 157, 311
BshTI ACCGGT 1 cut(s) 480
BsiEI CGRYCG 3 cut(s) 347, 408, 450
BsiSI CCGG 6 cut(s) 21, 30, 154, 281, 394, 481
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 4 cut(s) 11, 122, 146, 410
BsmBI CGTCTC 2 cut(s) 122, 410
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 2 cut(s) 157, 311
Bso31I GGTCTC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 5 cut(s) 3, 344, 405, 447, 487
BspACI CCGC 6 cut(s) 180, 210, 242, 318, 349, 385
BspANI GGCC 2 cut(s) 157, 311
BspCNI CTCAG 1 cut(s) 215
BspEI TCCGGA 1 cut(s) 393
BspFNI CGCG 2 cut(s) 349, 385
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 29, 480
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 2 cut(s) 29, 480
BssECI CCNNGG 3 cut(s) 312, 313, 338
BssMI GATC 5 cut(s) 3, 344, 405, 447, 487
BssNI GRCGYC 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 314, 360
Bst4CI ACNGT 2 cut(s) 75, 82
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 144, 257, 402
BstFNI CGCG 2 cut(s) 349, 385
BstHHI GCGC 3 cut(s) 172, 179, 385
BstKTI GATC 5 cut(s) 6, 347, 408, 450, 490
BstMAI GTCTC 4 cut(s) 11, 122, 146, 410
BstMBI GATC 5 cut(s) 3, 344, 405, 447, 487
BstMCI CGRYCG 3 cut(s) 347, 408, 450
BstMWI GCNNNNNNNGC 4 cut(s) 176, 207, 216, 355
BstNI CCWGG 2 cut(s) 314, 360
BstSCI CCNGG 3 cut(s) 279, 312, 358
BstUI CGCG 2 cut(s) 349, 385
BstV1I GCAGC 4 cut(s) 154, 335, 350, 400
BstV2I GAAGAC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 157, 311
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 3 cut(s) 144, 257, 402
Cac8I GCNNGC 1 cut(s) 221
CciI TCATGA 1 cut(s) 424
CfoI GCGC 3 cut(s) 172, 179, 385
Cfr10I RCCGGY 2 cut(s) 29, 480
Cfr13I GGNCC 3 cut(s) 237, 310, 483
CpoI CGGWCCG 1 cut(s) 483
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 436
CspAI ACCGGT 1 cut(s) 480
CspI CGGWCCG 1 cut(s) 483
CviAII CATG 3 cut(s) 174, 425, 433
CviJI RGCY 9 cut(s) 29, 157, 167, 201, 219, 311, 326, 363, 391
CviKI_1 RGCY 9 cut(s) 29, 157, 167, 201, 219, 311, 326, 363, 391
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 202
DpnI GATC 5 cut(s) 5, 346, 407, 449, 489
DpnII GATC 5 cut(s) 3, 344, 405, 447, 487
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 237, 483
EcoRII CCWGG 2 cut(s) 312, 358
Esp3I CGTCTC 2 cut(s) 122, 410
FaeI CATG 3 cut(s) 177, 428, 436
FaiI YATR 3 cut(s) 175, 426, 434
FatI CATG 3 cut(s) 173, 424, 432
FauI CCCGC 2 cut(s) 203, 249
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 6 cut(s) 168, 180, 324, 364, 386, 389
FokI GGATG 3 cut(s) 131, 244, 409
Fsp4HI GCNGC 6 cut(s) 168, 180, 324, 364, 386, 389
FspBI CTAG 1 cut(s) 164
GlaI GCGC 3 cut(s) 171, 178, 384
GluI GCNGC 6 cut(s) 168, 180, 324, 364, 386, 389
HaeIII GGCC 2 cut(s) 157, 311
HapII CCGG 6 cut(s) 21, 30, 154, 281, 394, 481
HgaI GACGC 1 cut(s) 437
HhaI GCGC 3 cut(s) 172, 179, 385
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 3 cut(s) 177, 428, 436
Hin6I GCGC 3 cut(s) 170, 177, 383
HinP1I GCGC 3 cut(s) 170, 177, 383
HinfI GANTC 3 cut(s) 296, 329, 459
HpaII CCGG 6 cut(s) 21, 30, 154, 281, 394, 481
Hpy166II GTNNAC 3 cut(s) 78, 135, 237
Hpy188I TCNGA 5 cut(s) 54, 262, 301, 469, 487
Hpy188III TCNNGA 2 cut(s) 394, 425
Hpy8I GTNNAC 3 cut(s) 78, 135, 237
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 2 cut(s) 75, 82
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 207, 216, 355
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 419
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 3 cut(s) 177, 428, 436
HspAI GCGC 3 cut(s) 170, 177, 383
Kpn2I TCCGGA 1 cut(s) 393
Kzo9I GATC 5 cut(s) 3, 344, 405, 447, 487
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 320, 396
Lsp1109I GCAGC 4 cut(s) 154, 335, 350, 400
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 419
MalI GATC 5 cut(s) 5, 346, 407, 449, 489
MbiI CCGCTC 1 cut(s) 244
MboI GATC 5 cut(s) 3, 344, 405, 447, 487
MboII GAAGA 3 cut(s) 35, 238, 412
MluCI AATT 1 cut(s) 36
MlyI GAGTC 3 cut(s) 305, 323, 453
MnlI CCTC 4 cut(s) 73, 277, 367, 475
MroI TCCGGA 1 cut(s) 393
MseI TTAA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 6 cut(s) 21, 30, 154, 281, 394, 481
MspR9I CCNGG 3 cut(s) 281, 314, 360
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 2 cut(s) 314, 360
MvnI CGCG 2 cut(s) 349, 385
MwoI GCNNNNNNNGC 4 cut(s) 176, 207, 216, 355
NciI CCSGG 1 cut(s) 281
NdeII GATC 5 cut(s) 3, 344, 405, 447, 487
NlaIII CATG 3 cut(s) 177, 428, 436
NlaIV GGNNCC 1 cut(s) 239
PagI TCATGA 1 cut(s) 424
PasI CCCWGGG 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 251
PctI GAATGC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 295
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 6 cut(s) 169, 181, 325, 365, 387, 390
Ple19I CGATCG 3 cut(s) 347, 408, 450
PleI GAGTC 3 cut(s) 304, 323, 453
PpsI GAGTC 3 cut(s) 304, 323, 453
Psp6I CCWGG 2 cut(s) 312, 358
PspGI CCWGG 2 cut(s) 312, 358
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 3 cut(s) 237, 310, 483
PsyI GACNNNGTC 1 cut(s) 295
PvuI CGATCG 3 cut(s) 347, 408, 450
RgaI GCGATCGC 1 cut(s) 347
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
Rsr2I CGGWCCG 1 cut(s) 483
RsrII CGGWCCG 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 6 cut(s) 168, 180, 324, 364, 386, 389
Sau3AI GATC 5 cut(s) 3, 344, 405, 447, 487
Sau96I GGNCC 3 cut(s) 237, 310, 483
SchI GAGTC 3 cut(s) 305, 323, 453
ScrFI CCNGG 3 cut(s) 281, 314, 360
SetI ASST 6 cut(s) 65, 165, 169, 203, 393, 422
SfaAI GCGATCGC 1 cut(s) 347
SgfI GCGATCGC 1 cut(s) 347
SinI GGWCC 2 cut(s) 237, 483
Sse9I AATT 1 cut(s) 36
SsiI CCGC 6 cut(s) 180, 210, 242, 318, 349, 385
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 279, 312, 358
TaaI ACNGT 2 cut(s) 75, 82
TaiI ACGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 190, 332, 408, 446
TasI AATT 1 cut(s) 36
TauI GCSGC 2 cut(s) 182, 388
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseI GCWGC 4 cut(s) 167, 323, 363, 388
TspDTI ATGAA 3 cut(s) 74, 413, 413
TspGWI ACGGA 2 cut(s) 386, 428
Tth111I GACNNNGTC 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 237, 483
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.