Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Forward (+)

59088 .. 61417

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0000300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAAAAAGAAAAACTCGATCGAGTTAATGGGGGTCTGGCGCAGATTGGGTACAAAAGCTGAAGTCTTGTATTCGACGACGTTCTCATCGTCATGGTCGACCCCTCTCGGTCTCAGTCGCCCGCTGTCTTCTGCAGCCAGTGGTAATGGGCAGGCTGAAATAATGAGCGGAAAGCCAATCGCAAAAGACATAAGGTCCAGAGTAGCTGCTGAAATATGCAGAATGAAGGCTGCCACAGGAAGACTGCCTGGATTGGCTGTTGTTTTGGTGGGTAACAGAAAGGATTCACACACTTATGTCCATCTCAAGTTAAAAGCTTGCAATCAAGTCGGAATAGTGACTTCTATTGTTCAACTGCCCCAAGACTGTACTGAAGCTCGACTTATTGATGTTGTTTCATCTTTTAACCGGAACCCGTCGGTGCACGGTATAATTGTGCAGCTCCCTCTTCCACAGCATTTAGACGAGGAAAAGATTATAAATTTTGTTAGTCCAGAAAAAGATGTGGATGGCTTTCATCCCCTCAACATGGGGAATCTTGCCATGCGGGGAAGGGAACCCTTATTTATCCCTTGTGCCCCTAAGGCTTGCATTGAATTGTTGCTCCGATATGGGGTGGAGATTATTGGGAAGAATGCAGTGGTTATAGGGAGAAGCAAGATTGTTGGGTTATCCACTTCTTTGCTATTGCAGAGGCACCACGCGACTGTTAGCACCTTGCATTCATTCACCAAGAACCCAGAAGAATTGACTCGTCGCGCTGATGTTGTCATCTCAGATGTTGGGACTCCAAACTTAGTTCAATGGGACTGGCTGAAGCCAGGGGCAGTTGTAGTTGATATGGGGACGAATCCAGTTAAGGATCCCAGTAGCCGTCGTGGTTTTCGTATTACAGGAGATGTTTGCTACTTGGAGGCAATCAAGGTGGTGTCAGCCATAACTCCTGTTCCAGGAGGAGTAGGACCTGTTGTAATCTCAATGCTCCTCTCTAACACCCTTGACTCTGCTAAAAGAGCTTTCGGATTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

37.12

Weight (kDa)

9.62

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	55 - 170	1.2e-39	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	191 - 339	1.7e-49	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	696
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	2 cut(s)	704, 759
AciI	CCGC	3 cut(s)	122, 168, 547
AclWI	GGATC	2 cut(s)	857, 870
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	3 cut(s)	81, 393, 836
AfaI	GTAC	2 cut(s)	52, 370
AfiI	CCNNNNNNNGG	3 cut(s)	529, 613, 950
AgsI	TTSAA	3 cut(s)	353, 596, 803
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	247, 820, 949
AluBI	AGCT	6 cut(s)	59, 206, 317, 377, 442, 1016
AluI	AGCT	6 cut(s)	59, 206, 317, 377, 442, 1016
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	857, 870
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	4 cut(s)	134, 206, 230, 439
ApoI	RAATTY	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	2 cut(s)	42, 761
AspS9I	GGNCC	2 cut(s)	195, 962
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	2 cut(s)	195, 962
AxyI	CCTNAGG	1 cut(s)	582
BaeGI	GKGCMC	2 cut(s)	426, 580
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	696
BbsI	GAAGAC	2 cut(s)	120, 247
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	4 cut(s)	146, 193, 217, 451
BccI	CCATC	2 cut(s)	309, 503
BceAI	ACGGC	1 cut(s)	858
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	3 cut(s)	249, 822, 951
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	584
BisI	GCNGC	4 cut(s)	135, 207, 231, 440
BlsI	GCNGC	4 cut(s)	136, 208, 232, 441
Bme1390I	CCNGG	3 cut(s)	249, 822, 951
Bme18I	GGWCC	2 cut(s)	195, 962
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	195, 962
BmiI	GGNNCC	4 cut(s)	413, 558, 698, 864
BmrFI	CCNGG	3 cut(s)	249, 822, 951
BmrI	ACTGGG	1 cut(s)	861
BmuI	ACTGGG	1 cut(s)	861
BpiI	GAAGAC	2 cut(s)	120, 247
BpuEI	CTTGAG	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	821
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 613, 950
Bse1I	ACTGG	4 cut(s)	138, 815, 854, 867
Bse21I	CCTNAGG	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	249, 822, 951
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	2 cut(s)	514, 517
BseLI	CCNNNNNNNGG	3 cut(s)	529, 613, 950
BseMII	CTCAG	2 cut(s)	127, 789
BseNI	ACTGG	4 cut(s)	138, 815, 854, 867
BseRI	GAGGAG	2 cut(s)	969, 974
BseSI	GKGCMC	2 cut(s)	426, 580
BseXI	GCAGC	4 cut(s)	146, 193, 217, 451
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	2 cut(s)	704, 759
Bsh1285I	CGRYCG	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	696
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	3 cut(s)	799, 821, 859
BslI	CCNNNNNNNGG	3 cut(s)	529, 613, 950
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	3 cut(s)	799, 821, 859
BsmI	GAATGC	2 cut(s)	640, 721
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	426, 580
Bsp143I	GATC	2 cut(s)	18, 862
BspACI	CCGC	3 cut(s)	122, 168, 547
BspCNI	CTCAG	2 cut(s)	126, 788
BspFNI	CGCG	2 cut(s)	704, 759
BspLI	GGNNCC	4 cut(s)	413, 558, 698, 864
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	2 cut(s)	857, 870
BspT107I	GGYRCC	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	138, 815, 854, 867
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	2 cut(s)	18, 862
Bst2UI	CCWGG	3 cut(s)	249, 822, 951
Bst4CI	ACNGT	3 cut(s)	368, 428, 709
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	4 cut(s)	122, 153, 319, 589
BstDEI	CTNAG	4 cut(s)	113, 582, 775, 796
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstF5I	GGATG	2 cut(s)	514, 517
BstFNI	CGCG	2 cut(s)	704, 759
BstHHI	GCGC	2 cut(s)	42, 761
BstKTI	GATC	2 cut(s)	21, 865
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	18, 862
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 1013
BstNI	CCWGG	3 cut(s)	249, 822, 951
BstSCI	CCNGG	3 cut(s)	247, 820, 949
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	426, 580
BstUI	CGCG	2 cut(s)	704, 759
BstV1I	GCAGC	4 cut(s)	146, 193, 217, 451
BstV2I	GAAGAC	2 cut(s)	120, 247
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
Bsu36I	CCTNAGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	514, 517
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	145, 645
Cac8I	GCNNGC	4 cut(s)	122, 153, 319, 589
CfoI	GCGC	2 cut(s)	42, 761
Cfr13I	GGNCC	2 cut(s)	195, 962
Csp6I	GTAC	2 cut(s)	51, 369
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviAII	CATG	3 cut(s)	93, 529, 544
CviQI	GTAC	2 cut(s)	51, 369
DdeI	CTNAG	4 cut(s)	113, 582, 775, 796
DpnI	GATC	2 cut(s)	20, 864
DpnII	GATC	2 cut(s)	18, 862
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	453
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	195, 962
Eco57I	CTGAAG	3 cut(s)	81, 393, 836
Eco81I	CCTNAGG	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	3 cut(s)	247, 820, 949
FaeI	CATG	3 cut(s)	96, 532, 547
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	3 cut(s)	799, 821, 859
FatI	CATG	3 cut(s)	92, 528, 543
FauI	CCCGC	2 cut(s)	129, 540
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	135, 207, 231, 440
FokI	GGATG	2 cut(s)	504, 521
Fsp4HI	GCNGC	4 cut(s)	135, 207, 231, 440
GlaI	GCGC	2 cut(s)	41, 760
GluI	GCNGC	4 cut(s)	135, 207, 231, 440
HapII	CCGG	1 cut(s)	409
HhaI	GCGC	2 cut(s)	42, 761
Hin1II	CATG	3 cut(s)	96, 532, 547
Hin6I	GCGC	2 cut(s)	40, 759
HinP1I	GCGC	2 cut(s)	40, 759
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	6 cut(s)	284, 535, 751, 787, 850, 1001
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	2 cut(s)	99, 424
Hpy188I	TCNGA	4 cut(s)	332, 608, 778, 1022
Hpy188III	TCNNGA	2 cut(s)	198, 494
Hpy8I	GTNNAC	2 cut(s)	99, 424
Hpy99I	CGWCG	5 cut(s)	79, 82, 421, 759, 879
HpyAV	CCTTC	2 cut(s)	220, 546
HpyCH4III	ACNGT	3 cut(s)	368, 428, 709
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	9 cut(s)	134, 219, 321, 424, 439, 591, 638, 691, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 1013
HpyF3I	CTNAG	4 cut(s)	113, 582, 775, 796
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	96, 532, 547
HspAI	GCGC	2 cut(s)	40, 759
Kzo9I	GATC	2 cut(s)	18, 862
LmnI	GCTCC	3 cut(s)	447, 609, 987
Lsp1109I	GCAGC	4 cut(s)	146, 193, 217, 451
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	272, 337
MalI	GATC	2 cut(s)	20, 864
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	2 cut(s)	18, 862
MboII	GAAGA	5 cut(s)	120, 252, 440, 643, 755
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	426, 580
MluCI	AATT	4 cut(s)	432, 481, 596, 746
MlyI	GAGTC	3 cut(s)	745, 781, 995
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	8 cut(s)	114, 456, 460, 533, 687, 907, 947, 995
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	5 cut(s)	26, 311, 405, 858, 1025
MslI	CAYNNNNRTG	2 cut(s)	91, 294
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	3 cut(s)	249, 822, 951
Mva1269I	GAATGC	2 cut(s)	640, 721
MvaI	CCWGG	3 cut(s)	249, 822, 951
MvnI	CGCG	2 cut(s)	704, 759
MwoI	GCNNNNNNNGC	2 cut(s)	584, 1013
NdeII	GATC	2 cut(s)	18, 862
NlaIII	CATG	3 cut(s)	96, 532, 547
NlaIV	GGNNCC	4 cut(s)	413, 558, 698, 864
NmuCI	GTSAC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	3 cut(s)	86, 95, 883
PctI	GAATGC	2 cut(s)	640, 721
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	284, 535, 850
PfoI	TCCNGGA	1 cut(s)	949
PkrI	GCNGC	4 cut(s)	136, 208, 232, 441
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	3 cut(s)	745, 781, 995
PpsI	GAGTC	3 cut(s)	745, 781, 995
PpuMI	RGGWCCY	1 cut(s)	962
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	3 cut(s)	247, 820, 949
PspGI	CCWGG	3 cut(s)	247, 820, 949
PspN4I	GGNNCC	4 cut(s)	413, 558, 698, 864
PspPI	GGNCC	2 cut(s)	195, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	862
PvuI	CGATCG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	52, 370
RsaNI	GTAC	2 cut(s)	51, 369
RseI	CAYNNNNRTG	2 cut(s)	91, 294
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	5 cut(s)	26, 311, 405, 858, 1025
SatI	GCNGC	4 cut(s)	135, 207, 231, 440
Sau3AI	GATC	2 cut(s)	18, 862
Sau96I	GGNCC	2 cut(s)	195, 962
SchI	GAGTC	3 cut(s)	745, 781, 995
ScrFI	CCNGG	3 cut(s)	249, 822, 951
SduI	GDGCHC	2 cut(s)	426, 580
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	2 cut(s)	195, 962
SmiMI	CAYNNNNRTG	2 cut(s)	91, 294
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	432, 481, 596, 746
SsiI	CCGC	3 cut(s)	122, 168, 547
StyD4I	CCNGG	3 cut(s)	247, 820, 949
TaaI	ACNGT	3 cut(s)	368, 428, 709
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	5 cut(s)	17, 21, 74, 98, 379
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	432, 481, 596, 746
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	284, 535, 850
Tru1I	TTAA	5 cut(s)	26, 311, 405, 858, 1025
Tru9I	TTAA	5 cut(s)	26, 311, 405, 858, 1025
TscAI	CASTG	2 cut(s)	145, 645
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	134, 206, 230, 439
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	5 cut(s)	17, 239, 387, 506, 714
TspRI	CASTG	2 cut(s)	145, 645
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	195, 962
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.