Prupe.3G078300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004798
Physical Location & Seq
Forward (+)
5799044 .. 5799934
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G078300.1

Sequence Viewer

Length: 360 bp
ATGGCAACTCCTCTCACGTCTTTCAGACCCGTTTCGATCCGTCCAAACGCCTCCGGATCCCAGCGACCCGACCCGAATCGCCTCAAGCCTTCCTCCTCCAGCTGGTGGACCCCGCTCTTCGGCTGGTCGTCCGACCCGGCAGAATACATCACCGCTGATCCGGCGCTAAACTTCCGCAACAACGATCTGGTTTCTGGGAGCGACCCGGCCCGACCCGGGTCCAGATTCGGGTTGGGGTGCTTCACGGAAGAGAAGGCGAAGCAGCTCCGGAAGAAGACCCTGGAGACTTCCGCATTCCATGATATCATGTACCACTCGGCCATCGCGTCTCGGCTCGCCTCCGATTTATCGGACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.11

Weight (kDa)

8.93

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 115
AccII CGCG 1 cut(s) 326
AccIII TCCGGA 2 cut(s) 53, 267
AciI CCGC 4 cut(s) 113, 153, 175, 291
AclWI GGATC 4 cut(s) 31, 51, 64, 152
AcoI YGGCCR 1 cut(s) 318
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 5 cut(s) 102, 105, 119, 216, 228
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 2 cut(s) 102, 265
AluI AGCT 2 cut(s) 102, 265
Alw26I GTCTC 2 cut(s) 278, 333
AlwI GGATC 4 cut(s) 31, 51, 64, 152
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 2 cut(s) 53, 267
AoxI GGCC 2 cut(s) 207, 318
ApeKI GCWGC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 4 cut(s) 108, 208, 219, 352
AsuC2I CCSGG 4 cut(s) 137, 206, 216, 217
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 3 cut(s) 108, 219, 352
BamHI GGATCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 4 cut(s) 137, 206, 216, 217
BcoDI GTCTC 2 cut(s) 278, 333
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 5 cut(s) 137, 206, 216, 217, 281
Bme18I GGWCC 3 cut(s) 108, 219, 352
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 4 cut(s) 108, 208, 219, 352
BmiI GGNNCC 3 cut(s) 58, 110, 220
BmrFI CCNGG 5 cut(s) 137, 206, 216, 217, 281
BoxI GACNNNNGTC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 2 cut(s) 82, 302
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 4 cut(s) 137, 206, 216, 217
BsaJI CCNNGG 2 cut(s) 215, 279
BsaWI WCCGGW 2 cut(s) 53, 267
Bsc4I CCNNNNNNNGG 5 cut(s) 102, 105, 119, 216, 228
Bse1I ACTGG 1 cut(s) 355
BseAI TCCGGA 2 cut(s) 53, 267
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 215, 279
BseLI CCNNNNNNNGG 5 cut(s) 102, 105, 119, 216, 228
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 2 cut(s) 209, 320
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 6 cut(s) 54, 137, 161, 206, 216, 268
BslI CCNNNNNNNGG 5 cut(s) 102, 105, 119, 216, 228
BsmAI GTCTC 2 cut(s) 278, 333
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 209, 320
BsoBI CYCGRG 1 cut(s) 215
Bsp13I TCCGGA 2 cut(s) 53, 267
Bsp143I GATC 4 cut(s) 36, 56, 157, 184
BspACI CCGC 4 cut(s) 113, 153, 175, 291
BspANI GGCC 2 cut(s) 209, 320
BspEI TCCGGA 2 cut(s) 53, 267
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 3 cut(s) 58, 110, 220
BspPI GGATC 4 cut(s) 31, 51, 64, 152
BspQI GCTCTTC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 215, 279
BssMI GATC 4 cut(s) 36, 56, 157, 184
Bst2UI CCWGG 1 cut(s) 281
Bst6I CTCTTC 2 cut(s) 122, 243
BstC8I GCNNGC 1 cut(s) 336
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 39, 59, 160, 187
BstMAI GTCTC 2 cut(s) 278, 333
BstMBI GATC 4 cut(s) 36, 56, 157, 184
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 281
BstPAI GACNNNNGTC 1 cut(s) 217
BstSCI CCNGG 5 cut(s) 135, 204, 214, 215, 279
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 2 cut(s) 209, 320
BtgZI GCGATG 1 cut(s) 307
BtrI CACGTC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 108, 208, 219, 352
Cfr9I CCCGGG 1 cut(s) 215
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 299, 307
CviJI RGCY 7 cut(s) 88, 102, 123, 209, 265, 320, 334
CviKI_1 RGCY 7 cut(s) 88, 102, 123, 209, 265, 320, 334
CviQI GTAC 1 cut(s) 310
DpnI GATC 4 cut(s) 38, 58, 159, 186
DpnII GATC 4 cut(s) 36, 56, 157, 184
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 122, 243
EarI CTCTTC 2 cut(s) 122, 243
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 3 cut(s) 108, 219, 352
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 302, 310
FaiI YATR 2 cut(s) 300, 308
FatI CATG 2 cut(s) 298, 306
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
GlaI GCGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 2 cut(s) 82, 302
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 2 cut(s) 209, 320
HapII CCGG 6 cut(s) 54, 137, 161, 206, 216, 268
HgaI GACGC 1 cut(s) 315
HhaI GCGC 1 cut(s) 166
Hin1II CATG 2 cut(s) 302, 310
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 2 cut(s) 76, 225
HpaII CCGG 6 cut(s) 54, 137, 161, 206, 216, 268
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 4 cut(s) 26, 133, 343, 352
Hpy188III TCNNGA 3 cut(s) 54, 222, 268
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 99, 247
HpyCH4IV ACGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 302, 310
HspAI GCGC 1 cut(s) 164
Kpn2I TCCGGA 2 cut(s) 53, 267
Kzo9I GATC 4 cut(s) 36, 56, 157, 184
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 198, 270
Lsp1109I GCAGC 1 cut(s) 274
MaeII ACGT 1 cut(s) 17
MalI GATC 4 cut(s) 38, 58, 159, 186
MbiI CCGCTC 1 cut(s) 115
MboI GATC 4 cut(s) 36, 56, 157, 184
MboII GAAGA 4 cut(s) 109, 260, 283, 286
MflI RGATCY 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 6 cut(s) 21, 61, 92, 103, 106, 349
MroI TCCGGA 2 cut(s) 53, 267
MspA1I CMGCKG 2 cut(s) 102, 155
MspI CCGG 6 cut(s) 54, 137, 161, 206, 216, 268
MspR9I CCNGG 5 cut(s) 137, 206, 216, 217, 281
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 4 cut(s) 137, 206, 216, 217
NdeII GATC 4 cut(s) 36, 56, 157, 184
NlaIII CATG 2 cut(s) 302, 310
NlaIV GGNNCC 3 cut(s) 58, 110, 220
NmeAIII GCCGAG 2 cut(s) 296, 310
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 76, 225
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 58, 110, 220
PspPI GGNCC 4 cut(s) 108, 208, 219, 352
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 102
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 122
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 4 cut(s) 36, 56, 157, 184
Sau96I GGNCC 4 cut(s) 108, 208, 219, 352
ScrFI CCNGG 5 cut(s) 137, 206, 216, 217, 281
SetI ASST 3 cut(s) 20, 104, 267
SinI GGWCC 3 cut(s) 108, 219, 352
SmaI CCCGGG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 4 cut(s) 113, 153, 175, 291
StyD4I CCNGG 5 cut(s) 135, 204, 214, 215, 279
TaiI ACGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 35
TfiI GAWTC 2 cut(s) 76, 225
TseI GCWGC 1 cut(s) 262
TspGWI ACGGA 2 cut(s) 29, 260
TspMI CCCGGG 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 3 cut(s) 108, 219, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmaI CCCGGG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.