Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Reverse (-)

2092153 .. 2092506

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCACCAATCTCATCCACTTCCGTCCATCCCTCACCGCCCCGTGCGCCGCCGCCAACCGCAAGCCCGACCCGGCCCGCACCTCCAAGTGGTGGAGCCCCCTCTTCGGCTGGTCCGCTGAACCGGACTACATTGACTCCACCAACTCCAAATCCACCGAGCCGGCCGAGGCCGGACCGGAGTCCAAGCCGCCGCCGCAGCGATCCCGGTTCGCGCCGGGCTGCTTCACGGAGGAGAAGGCCAAGCAGCTCCGGCTCAAGACCATCGAGACGGAGACGTTTCACGACGCCATGTACCACTCCTCCATCGCCAACAGACTCGCCTCCGATTTCAAGAACCGGTCCGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.11

Weight (kDa)

8.64

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	1 cut(s)	215
AciI	CCGC	9 cut(s)	39, 51, 54, 61, 79, 117, 191, 194, 197
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	3, 165
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	90, 93, 107
AgeI	ACCGGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	263, 269
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	5 cut(s)	3, 75, 165, 171, 240
ApeKI	GCWGC	3 cut(s)	199, 222, 247
AsiGI	ACCGGT	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	50, 217
AspS9I	GGNCC	4 cut(s)	76, 114, 176, 342
AsuC2I	CCSGG	3 cut(s)	74, 208, 219
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	3 cut(s)	114, 176, 342
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	209, 211, 259
BccI	CCATC	3 cut(s)	37, 272, 314
BcnI	CCSGG	3 cut(s)	74, 208, 219
BcoDI	GTCTC	2 cut(s)	263, 269
BisI	GCNGC	8 cut(s)	51, 54, 191, 194, 197, 200, 223, 248
BlsI	GCNGC	8 cut(s)	52, 55, 192, 195, 198, 201, 224, 249
Bme1390I	CCNGG	3 cut(s)	74, 208, 219
Bme18I	GGWCC	3 cut(s)	114, 176, 342
BmgT120I	GGNCC	4 cut(s)	76, 114, 176, 342
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	3 cut(s)	74, 208, 219
BoxI	GACNNNNGTC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	3 cut(s)	74, 208, 219
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	3 cut(s)	124, 178, 339
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 93, 107
Bse118I	RCCGGY	2 cut(s)	163, 339
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	15, 29
BseLI	CCNNNNNNNGG	3 cut(s)	90, 93, 107
BseRI	GAGGAG	2 cut(s)	248, 292
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	209, 211, 259
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	5 cut(s)	5, 77, 167, 173, 242
BshTI	ACCGGT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	9 cut(s)	74, 125, 164, 174, 179, 208, 218, 253, 340
BslI	CCNNNNNNNGG	3 cut(s)	90, 93, 107
BsmAI	GTCTC	2 cut(s)	263, 269
BsmBI	CGTCTC	2 cut(s)	263, 269
BsnI	GGCC	5 cut(s)	5, 77, 167, 173, 242
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	203, 346
BspACI	CCGC	9 cut(s)	39, 51, 54, 61, 79, 117, 191, 194, 197
BspANI	GGCC	5 cut(s)	5, 77, 167, 173, 242
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	163, 339
BssAI	RCCGGY	2 cut(s)	163, 339
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	203, 346
BssNI	GRCGYC	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	65, 79, 165
BstF5I	GGATG	2 cut(s)	15, 29
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	50, 217
BstKTI	GATC	2 cut(s)	206, 349
BstMAI	GTCTC	2 cut(s)	263, 269
BstMBI	GATC	2 cut(s)	203, 346
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 196, 199, 253
BstPAI	GACNNNNGTC	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	72, 206, 217
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	3 cut(s)	209, 211, 259
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	5 cut(s)	5, 77, 167, 173, 242
BtgZI	GCGATG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	15, 29
Cac8I	GCNNGC	3 cut(s)	65, 79, 165
CfoI	GCGC	2 cut(s)	50, 217
Cfr10I	RCCGGY	2 cut(s)	163, 339
Cfr13I	GGNCC	4 cut(s)	76, 114, 176, 342
CpoI	CGGWCCG	2 cut(s)	176, 342
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	295
CspAI	ACCGGT	1 cut(s)	339
CspI	CGGWCCG	2 cut(s)	176, 342
CviAII	CATG	1 cut(s)	292
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	2 cut(s)	205, 348
DpnII	GATC	2 cut(s)	203, 346
EaeI	YGGCCR	2 cut(s)	3, 165
EagI	CGGCCG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	114, 176, 342
Eco52I	CGGCCG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	101
Esp3I	CGTCTC	2 cut(s)	263, 269
FaeI	CATG	1 cut(s)	295
FaiI	YATR	1 cut(s)	293
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	8 cut(s)	51, 54, 191, 194, 197, 200, 223, 248
FokI	GGATG	2 cut(s)	2, 16
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	8 cut(s)	51, 54, 191, 194, 197, 200, 223, 248
GlaI	GCGC	2 cut(s)	49, 216
GluI	GCNGC	8 cut(s)	51, 54, 191, 194, 197, 200, 223, 248
HaeIII	GGCC	5 cut(s)	5, 77, 167, 173, 242
HapII	CCGG	9 cut(s)	74, 125, 164, 174, 179, 208, 218, 253, 340
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	2 cut(s)	50, 217
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	2 cut(s)	48, 215
HinP1I	GCGC	2 cut(s)	48, 215
HinfI	GANTC	3 cut(s)	137, 182, 318
HpaII	CCGG	9 cut(s)	74, 125, 164, 174, 179, 208, 218, 253, 340
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	328, 346, 353
Hpy188III	TCNNGA	4 cut(s)	259, 268, 284, 334
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 196, 199, 253
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	2 cut(s)	48, 215
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	203, 346
LmnI	GCTCC	2 cut(s)	96, 255
LpnPI	CCDG	9 cut(s)	87, 97, 138, 177, 187, 192, 221, 231, 266
Lsp1109I	GCAGC	3 cut(s)	209, 211, 259
MaeII	ACGT	1 cut(s)	278
MalI	GATC	2 cut(s)	205, 348
MboI	GATC	2 cut(s)	203, 346
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	131, 191, 312
MnlI	CCTC	7 cut(s)	44, 94, 113, 163, 226, 313, 334
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	9 cut(s)	74, 125, 164, 174, 179, 208, 218, 253, 340
MspR9I	CCNGG	3 cut(s)	74, 208, 219
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	47, 196, 199, 253
NaeI	GCCGGC	1 cut(s)	165
NciI	CCSGG	3 cut(s)	74, 208, 219
NdeII	GATC	2 cut(s)	203, 346
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	339
PkrI	GCNGC	8 cut(s)	52, 55, 192, 195, 198, 201, 224, 249
PleI	GAGTC	3 cut(s)	131, 190, 312
PpsI	GAGTC	3 cut(s)	131, 190, 312
PshAI	GACNNNNGTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	4 cut(s)	76, 114, 176, 342
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
Rsr2I	CGGWCCG	2 cut(s)	176, 342
RsrII	CGGWCCG	2 cut(s)	176, 342
SatI	GCNGC	8 cut(s)	51, 54, 191, 194, 197, 200, 223, 248
Sau3AI	GATC	2 cut(s)	203, 346
Sau96I	GGNCC	4 cut(s)	76, 114, 176, 342
SchI	GAGTC	3 cut(s)	131, 191, 312
ScrFI	CCNGG	3 cut(s)	74, 208, 219
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	86, 252, 281
SinI	GGWCC	3 cut(s)	114, 176, 342
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	9 cut(s)	39, 51, 54, 61, 79, 117, 191, 194, 197
StyD4I	CCNGG	3 cut(s)	72, 206, 217
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	267
TauI	GCSGC	5 cut(s)	53, 56, 193, 196, 199
TseI	GCWGC	3 cut(s)	199, 222, 247
TspGWI	ACGGA	3 cut(s)	14, 245, 287
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	3 cut(s)	114, 176, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.