Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Reverse (-)

3286157 .. 3286863

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCCACCAATCTCATCAACTTCCGGCCTGCCCTCACCGCCCCGTGCGCCGCCGCTAACCGGAAGCCCGAGCCGGCCCGCACCTCCAAGTGGTGGAGCCCTCTCTTCGGCTGGTCTGCCGAACCGGACTACATTGATTCCAACAACTCCAAATCCTCCTCCGAGCCGGCCGAGGACGGACCGGAGTCCAAACCGCGGCGATCTCGGTTCGCGCCCGGCTGCTTCACGGAGGAGAAGGCCAAGCAGCTCCGGCTCAAGACCATCGAAACGGAGACTTTTCACGACGCCATGTACCACTCATCGATCGCCACCAGACTCGCCTCCGATTTCAAGAACCGCAATTTCCATTGGTTTATTCGCCTGTCCGATCTGTTCATGTCTCTGAAGAATAGTCTAATCAGTGGGCAAGTGACCTATGCTAACTTCAGGGTTTTAGTCGTGTTTCCGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.09

Weight (kDa)

9.23

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	2 cut(s)	196, 212
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	7 cut(s)	39, 51, 54, 79, 194, 196, 337
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	2 cut(s)	404, 409
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	5 cut(s)	60, 90, 93, 107, 195
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	266, 384
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	4 cut(s)	26, 75, 168, 237
ApeKI	GCWGC	2 cut(s)	219, 244
AspLEI	GCGC	2 cut(s)	50, 214
AspS9I	GGNCC	2 cut(s)	76, 179
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	206, 256
BccI	CCATC	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	266, 384
BfaI	CTAG	1 cut(s)	451
BisI	GCNGC	5 cut(s)	51, 54, 197, 220, 245
BlsI	GCNGC	5 cut(s)	52, 55, 198, 221, 246
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	76, 179
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	216
BoxI	GACNNNNGTC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	171, 194
BsaWI	WCCGGW	4 cut(s)	60, 124, 181, 445
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 90, 93, 107, 195
Bse118I	RCCGGY	2 cut(s)	73, 166
BseAI	TCCGGA	1 cut(s)	445
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	171, 194
BseLI	CCNNNNNNNGG	5 cut(s)	60, 90, 93, 107, 195
BseRI	GAGGAG	2 cut(s)	148, 245
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	206, 256
Bsh1236I	CGCG	2 cut(s)	196, 212
Bsh1285I	CGRYCG	2 cut(s)	171, 306
BshFI	GGCC	4 cut(s)	28, 77, 170, 239
BshVI	ATCGAT	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	171, 306
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	9 cut(s)	25, 61, 74, 125, 167, 182, 216, 250, 446
BslI	CCNNNNNNNGG	5 cut(s)	60, 90, 93, 107, 195
BsmAI	GTCTC	2 cut(s)	266, 384
BsnI	GGCC	4 cut(s)	28, 77, 170, 239
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	200, 303, 367
BspACI	CCGC	7 cut(s)	39, 51, 54, 79, 194, 196, 337
BspANI	GGCC	4 cut(s)	28, 77, 170, 239
BspDI	ATCGAT	1 cut(s)	302
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	196, 212
BspLI	GGNNCC	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	73, 166
BssAI	RCCGGY	2 cut(s)	73, 166
BssECI	CCNNGG	2 cut(s)	171, 194
BssMI	GATC	3 cut(s)	200, 303, 367
BssNI	GRCGYC	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	30, 75, 79, 168
BstDSI	CCRYGG	1 cut(s)	194
BstFNI	CGCG	2 cut(s)	196, 212
BstHHI	GCGC	2 cut(s)	50, 214
BstKTI	GATC	3 cut(s)	203, 306, 370
BstMAI	GTCTC	2 cut(s)	266, 384
BstMBI	GATC	3 cut(s)	200, 303, 367
BstMCI	CGRYCG	2 cut(s)	171, 306
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 250
BstPAI	GACNNNNGTC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	2 cut(s)	196, 212
BstV1I	GCAGC	2 cut(s)	206, 256
BstZI	CGGCCG	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	28, 77, 170, 239
BsuTUI	ATCGAT	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	4 cut(s)	30, 75, 79, 168
CfoI	GCGC	2 cut(s)	50, 214
Cfr10I	RCCGGY	2 cut(s)	73, 166
Cfr13I	GGNCC	2 cut(s)	76, 179
Cfr42I	CCGCGG	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	302
CpoI	CGGWCCG	1 cut(s)	179
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	292
CspI	CGGWCCG	1 cut(s)	179
CviAII	CATG	2 cut(s)	289, 376
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	3 cut(s)	202, 305, 369
DpnII	GATC	3 cut(s)	200, 303, 367
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	179
Eco52I	CGGCCG	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	404, 409
Eco88I	CYCGRG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	2 cut(s)	292, 379
FaiI	YATR	3 cut(s)	290, 377, 417
FatI	CATG	2 cut(s)	288, 375
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	5 cut(s)	51, 54, 197, 220, 245
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	5 cut(s)	51, 54, 197, 220, 245
FspBI	CTAG	1 cut(s)	451
GlaI	GCGC	2 cut(s)	49, 213
GluI	GCNGC	5 cut(s)	51, 54, 197, 220, 245
HaeIII	GGCC	4 cut(s)	28, 77, 170, 239
HapII	CCGG	9 cut(s)	25, 61, 74, 125, 167, 182, 216, 250, 446
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	2 cut(s)	50, 214
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	292, 379
Hin6I	GCGC	2 cut(s)	48, 212
HinP1I	GCGC	2 cut(s)	48, 212
HinfI	GANTC	3 cut(s)	137, 185, 315
HpaII	CCGG	9 cut(s)	25, 61, 74, 125, 167, 182, 216, 250, 446
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	163, 325, 367, 384
Hpy188III	TCNNGA	4 cut(s)	256, 281, 331, 446
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 250
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	292, 379
HspAI	GCGC	2 cut(s)	48, 212
Kpn2I	TCCGGA	1 cut(s)	445
KroI	GCCGGC	2 cut(s)	73, 166
KroNI	GCCGGC	2 cut(s)	75, 168
KspI	CCGCGG	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	200, 303, 367
LmnI	GCTCC	2 cut(s)	96, 252
Lsp1109I	GCAGC	2 cut(s)	206, 256
MaeI	CTAG	1 cut(s)	451
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	3 cut(s)	202, 305, 369
MboI	GATC	3 cut(s)	200, 303, 367
MboII	GAAGA	2 cut(s)	97, 397
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	194, 309
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	44, 94, 111, 166, 166, 169, 223, 331
MroI	TCCGGA	1 cut(s)	445
MroNI	GCCGGC	2 cut(s)	73, 166
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	9 cut(s)	25, 61, 74, 125, 167, 182, 216, 250, 446
MspR9I	CCNGG	1 cut(s)	216
MvnI	CGCG	2 cut(s)	196, 212
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 250
NaeI	GCCGGC	2 cut(s)	75, 168
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	200, 303, 367
NgoMIV	GCCGGC	2 cut(s)	73, 166
NlaIII	CATG	2 cut(s)	292, 379
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	409
PdiI	GCCGGC	2 cut(s)	75, 168
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	5 cut(s)	52, 55, 198, 221, 246
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	2 cut(s)	193, 309
PpsI	GAGTC	2 cut(s)	193, 309
PshAI	GACNNNNGTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	2 cut(s)	76, 179
PvuI	CGATCG	1 cut(s)	306
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
Rsr2I	CGGWCCG	1 cut(s)	179
RsrII	CGGWCCG	1 cut(s)	179
SacII	CCGCGG	1 cut(s)	197
SatI	GCNGC	5 cut(s)	51, 54, 197, 220, 245
Sau3AI	GATC	3 cut(s)	200, 303, 367
Sau96I	GGNCC	2 cut(s)	76, 179
SchI	GAGTC	2 cut(s)	194, 309
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	86, 249, 416
Sfr303I	CCGCGG	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	7 cut(s)	39, 51, 54, 79, 194, 196, 337
SspMI	CTAG	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	214
TaqI	TCGA	2 cut(s)	264, 302
TasI	AATT	1 cut(s)	340
TauI	GCSGC	3 cut(s)	53, 56, 199
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	219, 244
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	364
TspGWI	ACGGA	3 cut(s)	192, 242, 284
TspRI	CASTG	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	179
XspI	CTAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.