Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Reverse (-)

2000641 .. 2001169

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGACCCCACACGGTGCATGGACCGTGTTAATTTTGGTAATCCGAATTCCCAAATCCAACGTCTCTCTCTAAAAATGTCAACCAATCTCATCAACTTCCGTCCAATCCTAACCGCGCCATGCGCCGCCGGAAAGCGAAGGACCAGCTCAGTTGGCGGGAAAGGCTCGCCGTCTAACTGGTGGACGCCGATCTTCGGGTGGTCCTCCGAACCCGACTACATTGACCCGGAGGCAAAGACGGACTCCGACGACAAGGACGAGGGCGGAGCAGCCGACTCGAAACAGAGGCGATCGCGGTTCGCGCCTGGCTGCTTCACGGAGGAGAAGGCGCGGCAGCTCCGGATCAAGACGATCGAAATGGAGACGTATCATGACGCGATGTATCACTCGTCGATCGCCAACCGACTCGCCTCCGATTTCAGGAACCGGTCCGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

8.86

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	116, 295, 302, 331, 377
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	6 cut(s)	114, 126, 156, 264, 295, 331
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	194, 420
AgeI	ACCGGT	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	147, 337
AluI	AGCT	2 cut(s)	147, 337
Alw26I	GTCTC	2 cut(s)	68, 356
AlwI	GGATC	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	339
ApeKI	GCWGC	3 cut(s)	269, 309, 334
ApoI	RAATTY	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AsiGI	ACCGGT	1 cut(s)	426
AsiSI	GCGATCGC	1 cut(s)	293
AspLEI	GCGC	4 cut(s)	118, 125, 304, 331
AspS9I	GGNCC	5 cut(s)	4, 22, 141, 201, 429
AsuC2I	CCSGG	1 cut(s)	227
AvaII	GGWCC	5 cut(s)	4, 22, 141, 201, 429
BbvI	GCAGC	3 cut(s)	281, 296, 346
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	68, 356
BisI	GCNGC	5 cut(s)	126, 270, 310, 332, 335
BlsI	GCNGC	5 cut(s)	127, 271, 311, 333, 336
Bme1390I	CCNGG	2 cut(s)	227, 306
Bme18I	GGWCC	5 cut(s)	4, 22, 141, 201, 429
BmgT120I	GGNCC	5 cut(s)	4, 22, 141, 201, 429
BmiI	GGNNCC	2 cut(s)	6, 425
BmrFI	CCNGG	2 cut(s)	227, 306
BpuMI	CCSGG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	185
BsaWI	WCCGGW	2 cut(s)	339, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 420
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	194, 420
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	281, 296, 346
Bsh1236I	CGCG	5 cut(s)	116, 295, 302, 331, 377
Bsh1285I	CGRYCG	3 cut(s)	293, 354, 396
BshTI	ACCGGT	1 cut(s)	426
BsiEI	CGRYCG	3 cut(s)	293, 354, 396
BsiSI	CCGG	4 cut(s)	129, 227, 340, 427
BslI	CCNNNNNNNGG	2 cut(s)	194, 420
BsmAI	GTCTC	2 cut(s)	68, 356
BsmBI	CGTCTC	2 cut(s)	68, 356
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
BspACI	CCGC	6 cut(s)	114, 126, 156, 264, 295, 331
BspCNI	CTCAG	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	339
BspFNI	CGCG	5 cut(s)	116, 295, 302, 331, 377
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	6, 425
BspPI	GGATC	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	426
BssMI	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	15, 26
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	148
BstFNI	CGCG	5 cut(s)	116, 295, 302, 331, 377
BstHHI	GCGC	4 cut(s)	118, 125, 304, 331
BstKTI	GATC	6 cut(s)	192, 293, 345, 354, 396, 436
BstMAI	GTCTC	2 cut(s)	68, 356
BstMBI	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
BstMCI	CGRYCG	3 cut(s)	293, 354, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 153, 162, 301
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	225, 304
BstUI	CGCG	5 cut(s)	116, 295, 302, 331, 377
BstV1I	GCAGC	3 cut(s)	281, 296, 346
BtgZI	GCGATG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	4 cut(s)	118, 125, 304, 331
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	5 cut(s)	4, 22, 141, 201, 429
CpoI	CGGWCCG	1 cut(s)	429
CseI	GACGC	2 cut(s)	193, 383
CspAI	ACCGGT	1 cut(s)	426
CspI	CGGWCCG	1 cut(s)	429
CviAII	CATG	3 cut(s)	19, 120, 371
CviJI	RGCY	5 cut(s)	147, 165, 272, 309, 337
CviKI_1	RGCY	5 cut(s)	147, 165, 272, 309, 337
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	6 cut(s)	191, 292, 344, 353, 395, 435
DpnII	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
DraIII	CACNNNGTG	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	279
Eco47I	GGWCC	5 cut(s)	4, 22, 141, 201, 429
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	304
Esp3I	CGTCTC	2 cut(s)	68, 356
FaeI	CATG	3 cut(s)	22, 123, 374
FaiI	YATR	4 cut(s)	20, 121, 372, 439
FatI	CATG	3 cut(s)	18, 119, 370
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	5 cut(s)	126, 270, 310, 332, 335
Fsp4HI	GCNGC	5 cut(s)	126, 270, 310, 332, 335
GlaI	GCGC	4 cut(s)	117, 124, 303, 330
GluI	GCNGC	5 cut(s)	126, 270, 310, 332, 335
HapII	CCGG	4 cut(s)	129, 227, 340, 427
HgaI	GACGC	2 cut(s)	193, 383
HhaI	GCGC	4 cut(s)	118, 125, 304, 331
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	22, 123, 374
Hin6I	GCGC	4 cut(s)	116, 123, 302, 329
HinP1I	GCGC	4 cut(s)	116, 123, 302, 329
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	242, 275, 405
HpaII	CCGG	4 cut(s)	129, 227, 340, 427
Hpy166II	GTNNAC	2 cut(s)	81, 183
Hpy188I	TCNGA	5 cut(s)	45, 208, 247, 415, 433
Hpy188III	TCNNGA	4 cut(s)	340, 346, 371, 421
Hpy8I	GTNNAC	2 cut(s)	81, 183
Hpy99I	CGWCG	2 cut(s)	251, 394
HpyAV	CCTTC	2 cut(s)	132, 319
HpyCH4III	ACNGT	2 cut(s)	15, 26
HpyCH4IV	ACGT	2 cut(s)	61, 365
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 153, 162, 301
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	2 cut(s)	61, 365
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	22, 123, 374
HspAI	GCGC	4 cut(s)	116, 123, 302, 329
Kpn2I	TCCGGA	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
LmnI	GCTCC	2 cut(s)	266, 342
LpnPI	CCDG	8 cut(s)	142, 157, 163, 240, 291, 318, 353, 406
Lsp1109I	GCAGC	3 cut(s)	281, 296, 346
MaeII	ACGT	2 cut(s)	61, 365
MalI	GATC	6 cut(s)	191, 292, 344, 353, 395, 435
MboI	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
MboII	GAAGA	1 cut(s)	184
MluCI	AATT	2 cut(s)	31, 46
MlyI	GAGTC	3 cut(s)	236, 269, 399
MmeI	TCCRAC	2 cut(s)	82, 270
MnlI	CCTC	6 cut(s)	214, 223, 253, 279, 313, 421
MroI	TCCGGA	1 cut(s)	339
MseI	TTAA	1 cut(s)	30
MspI	CCGG	4 cut(s)	129, 227, 340, 427
MspR9I	CCNGG	2 cut(s)	227, 306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	5 cut(s)	116, 295, 302, 331, 377
MwoI	GCNNNNNNNGC	4 cut(s)	122, 153, 162, 301
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
NlaIII	CATG	3 cut(s)	22, 123, 374
NlaIV	GGNNCC	2 cut(s)	6, 425
PagI	TCATGA	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PinAI	ACCGGT	1 cut(s)	426
PkrI	GCNGC	5 cut(s)	127, 271, 311, 333, 336
Ple19I	CGATCG	3 cut(s)	293, 354, 396
PleI	GAGTC	3 cut(s)	236, 269, 399
PpsI	GAGTC	3 cut(s)	236, 269, 399
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	6, 425
PspPI	GGNCC	5 cut(s)	4, 22, 141, 201, 429
PvuI	CGATCG	3 cut(s)	293, 354, 396
RgaI	GCGATCGC	1 cut(s)	293
Rsr2I	CGGWCCG	1 cut(s)	429
RsrII	CGGWCCG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	126, 270, 310, 332, 335
Sau3AI	GATC	6 cut(s)	189, 290, 342, 351, 393, 433
Sau96I	GGNCC	5 cut(s)	4, 22, 141, 201, 429
SchI	GAGTC	3 cut(s)	236, 269, 399
ScrFI	CCNGG	2 cut(s)	227, 306
SetI	ASST	4 cut(s)	64, 149, 339, 368
SfaAI	GCGATCGC	1 cut(s)	293
SgfI	GCGATCGC	1 cut(s)	293
SinI	GGWCC	5 cut(s)	4, 22, 141, 201, 429
Sse9I	AATT	2 cut(s)	31, 46
SsiI	CCGC	6 cut(s)	114, 126, 156, 264, 295, 331
StyD4I	CCNGG	2 cut(s)	225, 304
TaaI	ACNGT	2 cut(s)	15, 26
TaiI	ACGT	2 cut(s)	64, 368
TaqI	TCGA	3 cut(s)	278, 354, 392
TasI	AATT	2 cut(s)	31, 46
TauI	GCSGC	2 cut(s)	128, 334
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	3 cut(s)	269, 309, 334
TspGWI	ACGGA	3 cut(s)	89, 254, 332
VpaK11BI	GGWCC	5 cut(s)	4, 22, 141, 201, 429
XapI	RAATTY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.