Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Forward (+)

24525138 .. 24525491

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1203000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAACTCCTCTCACGTCCTTCAGACCCGTTTCGATCCGACCCAACGCCTCCGCCTCCCAACGGTCCGGCCCGAACCGCCGCAAGACCGCTTCCGCCAACTGGTGGACCCCGCTCTTTGGCTGGTCTTCCGACCCTGCGGAGTACATCAACGCCGATCCGGGACAAAACGCCAGCAACAAAGATCCGGGTTCTGACCCTACCCGAGCCGGATCCAGATTCGCGCTGGGGTGCTTCACGGAGGAGAAGGCGAAGCAACTGCGGAAAAAGACCCTGGAGACTTCCGCGTTCCACGATTTCATGTACCACTCGGCGATCGCGTCTCGGCTCGCGTCCGATTTATCGGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.84

Weight (kDa)

9.72

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	4 cut(s)	224, 287, 320, 332
AciI	CCGC	9 cut(s)	54, 79, 82, 90, 96, 113, 140, 262, 285
AclWI	GGATC	5 cut(s)	31, 152, 179, 207, 220
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	146, 305
AfiI	CCNNNNNNNGG	4 cut(s)	63, 102, 105, 119
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	272, 327
AlwI	GGATC	5 cut(s)	31, 152, 179, 207, 220
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	1 cut(s)	70
AsiSI	GCGATCGC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	66, 71, 108
AsuC2I	CCSGG	2 cut(s)	162, 189
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	66, 108
BamHI	GGATCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	275
BcnI	CCSGG	2 cut(s)	162, 189
BcoDI	GTCTC	2 cut(s)	272, 327
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	162, 189, 275
Bme18I	GGWCC	2 cut(s)	66, 108
BmeT110I	CYCGRG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	3 cut(s)	66, 71, 108
BmiI	GGNNCC	2 cut(s)	110, 214
BmrFI	CCNGG	3 cut(s)	162, 189, 275
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	296
BpuMI	CCSGG	2 cut(s)	162, 189
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 102, 105, 119
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	4 cut(s)	63, 102, 105, 119
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	4 cut(s)	224, 287, 320, 332
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	4 cut(s)	69, 161, 188, 210
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	4 cut(s)	63, 102, 105, 119
BsmAI	GTCTC	2 cut(s)	272, 327
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	36, 157, 184, 212, 315
BspACI	CCGC	9 cut(s)	54, 79, 82, 90, 96, 113, 140, 262, 285
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	4 cut(s)	224, 287, 320, 332
BspLI	GGNNCC	2 cut(s)	110, 214
BspPI	GGATC	5 cut(s)	31, 152, 179, 207, 220
BsrBI	CCGCTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	5 cut(s)	36, 157, 184, 212, 315
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	175, 330
BstFNI	CGCG	4 cut(s)	224, 287, 320, 332
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	5 cut(s)	39, 160, 187, 215, 318
BstMAI	GTCTC	2 cut(s)	272, 327
BstMBI	GATC	5 cut(s)	36, 157, 184, 212, 315
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	160, 187, 273
BstUI	CGCG	4 cut(s)	224, 287, 320, 332
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	184, 212
BstYI	RGATCY	2 cut(s)	184, 212
BsuRI	GGCC	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	175, 330
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	66, 71, 108
CpoI	CGGWCCG	1 cut(s)	66
CseI	GACGC	2 cut(s)	309, 321
Csp6I	GTAC	2 cut(s)	145, 304
CspI	CGGWCCG	1 cut(s)	66
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	4 cut(s)	72, 123, 209, 328
CviKI_1	RGCY	4 cut(s)	72, 123, 209, 328
CviQI	GTAC	2 cut(s)	145, 304
DpnI	GATC	5 cut(s)	38, 159, 186, 214, 317
DpnII	GATC	5 cut(s)	36, 157, 184, 212, 315
EciI	GGCGGA	2 cut(s)	43, 85
Eco47I	GGWCC	2 cut(s)	66, 108
Eco57I	CTGAAG	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	1 cut(s)	304
FaiI	YATR	1 cut(s)	302
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	82
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	4 cut(s)	69, 161, 188, 210
HgaI	GACGC	2 cut(s)	309, 321
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	4 cut(s)	69, 161, 188, 210
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	6 cut(s)	26, 41, 133, 196, 337, 346
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	31, 241
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	5 cut(s)	36, 157, 184, 212, 315
MaeII	ACGT	1 cut(s)	17
MalI	GATC	5 cut(s)	38, 159, 186, 214, 317
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	5 cut(s)	36, 157, 184, 212, 315
MboII	GAAGA	1 cut(s)	120
MflI	RGATCY	2 cut(s)	184, 212
MmeI	TCCRAC	2 cut(s)	64, 156
MnlI	CCTC	4 cut(s)	21, 61, 67, 235
MspI	CCGG	4 cut(s)	69, 161, 188, 210
MspR9I	CCNGG	3 cut(s)	162, 189, 275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	4 cut(s)	224, 287, 320, 332
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	162, 189
NdeII	GATC	5 cut(s)	36, 157, 184, 212, 315
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	110, 214
NmeAIII	GCCGAG	2 cut(s)	290, 304
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	83
Ple19I	CGATCG	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	110, 214
PspPI	GGNCC	3 cut(s)	66, 71, 108
PsuI	RGATCY	2 cut(s)	184, 212
PvuI	CGATCG	1 cut(s)	318
RgaI	GCGATCGC	1 cut(s)	318
RsaI	GTAC	2 cut(s)	146, 305
RsaNI	GTAC	2 cut(s)	145, 304
Rsr2I	CGGWCCG	1 cut(s)	66
RsrII	CGGWCCG	1 cut(s)	66
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	5 cut(s)	36, 157, 184, 212, 315
Sau96I	GGNCC	3 cut(s)	66, 71, 108
ScrFI	CCNGG	3 cut(s)	162, 189, 275
SetI	ASST	1 cut(s)	20
SfaAI	GCGATCGC	1 cut(s)	318
SgfI	GCGATCGC	1 cut(s)	318
SinI	GGWCC	2 cut(s)	66, 108
SsiI	CCGC	9 cut(s)	54, 79, 82, 90, 96, 113, 140, 262, 285
StyD4I	CCNGG	3 cut(s)	160, 187, 273
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	35
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	254
Van91I	CCANNNNNTGG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	66, 108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.