Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018730.1

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Reverse (-)

13314 .. 13679

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018730.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggcgactcctctcacggctttccgacccgtttcgatccgagccgacgcctccgcctccgcctcccacaaacccgacccgaatcgccgcaacaagcccgctaactccaactggtgggccccgctcttcggcatgtcgtccgacccggactacatcacgggcgcccctccgccgcagaatctcagtacggctccggattccgggcgcgacccgaaccggcccgggtccagattcgcgctgggttgcttcacggaagagaaggcgaagcagctccggaagaagacgctggagacctccgcattccacgatatcatgtaccactccgccattgcgtctcggctcgcctctgatttgtcggaccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.18

Weight (kDa)

9.3

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	2 cut(s)	207, 236
AccIII	TCCGGA	2 cut(s)	193, 273
AciI	CCGC	9 cut(s)	54, 60, 88, 99, 122, 170, 173, 297, 324
AclWI	GGATC	1 cut(s)	31
AcyI	GRCGYC	2 cut(s)	48, 162
AfaI	GTAC	2 cut(s)	187, 317
AfiI	CCNNNNNNNGG	3 cut(s)	114, 128, 200
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	284, 339
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	221
Aor13HI	TCCGGA	2 cut(s)	193, 273
AoxI	GGCC	2 cut(s)	117, 218
ApaI	GGGCCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	268
AspLEI	GCGC	3 cut(s)	164, 207, 238
AspS9I	GGNCC	5 cut(s)	117, 118, 219, 225, 358
AsuC2I	CCSGG	4 cut(s)	146, 202, 222, 223
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	225, 358
BaeGI	GKGCMC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	33, 204
BcnI	CCSGG	4 cut(s)	146, 202, 222, 223
BcoDI	GTCTC	2 cut(s)	284, 339
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	3 cut(s)	88, 173, 269
BlsI	GCNGC	3 cut(s)	89, 174, 270
Bme1390I	CCNGG	4 cut(s)	146, 202, 222, 223
Bme18I	GGWCC	2 cut(s)	225, 358
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	5 cut(s)	117, 118, 219, 225, 358
BmiI	GGNNCC	5 cut(s)	119, 120, 163, 192, 226
BmrFI	CCNGG	4 cut(s)	146, 202, 222, 223
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	308
BpuMI	CCSGG	4 cut(s)	146, 202, 222, 223
BsaHI	GRCGYC	2 cut(s)	48, 162
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	2 cut(s)	193, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 128, 200
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	116, 361
Bse3DI	GCAATG	1 cut(s)	327
BseAI	TCCGGA	2 cut(s)	193, 273
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	114, 128, 200
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	116, 361
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	207, 236
BshFI	GGCC	2 cut(s)	119, 220
BshNI	GGYRCC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	6 cut(s)	146, 194, 201, 217, 222, 274
BslI	CCNNNNNNNGG	3 cut(s)	114, 128, 200
BsmAI	GTCTC	2 cut(s)	284, 339
BsmBI	CGTCTC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	119, 220
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	221
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	2 cut(s)	193, 273
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	9 cut(s)	54, 60, 88, 99, 122, 170, 173, 297, 324
BspANI	GGCC	2 cut(s)	119, 220
BspCNI	CTCAG	1 cut(s)	195
BspEI	TCCGGA	2 cut(s)	193, 273
BspFNI	CGCG	2 cut(s)	207, 236
BspLI	GGNNCC	5 cut(s)	119, 120, 163, 192, 226
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	116, 361
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	2 cut(s)	48, 162
Bst6I	CTCTTC	2 cut(s)	131, 249
BstACI	GRCGYC	2 cut(s)	48, 162
BstC8I	GCNNGC	2 cut(s)	99, 342
BstDEI	CTNAG	1 cut(s)	182
BstFNI	CGCG	2 cut(s)	207, 236
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	164, 207, 238
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	284, 339
BstMBI	GATC	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	4 cut(s)	144, 200, 220, 221
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	2 cut(s)	207, 236
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	119, 220
Cac8I	GCNNGC	2 cut(s)	99, 342
CfoI	GCGC	3 cut(s)	164, 207, 238
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	5 cut(s)	117, 118, 219, 225, 358
Cfr9I	CCCGGG	1 cut(s)	221
CseI	GACGC	3 cut(s)	56, 292, 321
Csp6I	GTAC	2 cut(s)	186, 316
CviAII	CATG	2 cut(s)	133, 313
CviJI	RGCY	8 cut(s)	20, 44, 97, 119, 191, 220, 271, 340
CviKI_1	RGCY	8 cut(s)	20, 44, 97, 119, 191, 220, 271, 340
CviQI	GTAC	2 cut(s)	186, 316
DdeI	CTNAG	1 cut(s)	182
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	131, 249
EarI	CTCTTC	2 cut(s)	131, 249
EciI	GGCGGA	4 cut(s)	43, 49, 159, 313
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	225, 358
Eco88I	CYCGRG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	2 cut(s)	136, 316
FaiI	YATR	2 cut(s)	134, 314
FatI	CATG	2 cut(s)	132, 312
FauI	CCCGC	2 cut(s)	106, 129
Fnu4HI	GCNGC	3 cut(s)	88, 173, 269
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	88, 173, 269
GlaI	GCGC	3 cut(s)	163, 206, 237
GluI	GCNGC	3 cut(s)	88, 173, 269
GsaI	CCCAGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	119, 220
HapII	CCGG	6 cut(s)	146, 194, 201, 217, 222, 274
HgaI	GACGC	3 cut(s)	56, 292, 321
HhaI	GCGC	3 cut(s)	164, 207, 238
Hin1I	GRCGYC	2 cut(s)	48, 162
Hin1II	CATG	2 cut(s)	136, 316
Hin6I	GCGC	3 cut(s)	162, 205, 236
HinP1I	GCGC	3 cut(s)	162, 205, 236
HinfI	GANTC	5 cut(s)	7, 82, 178, 197, 231
HpaII	CCGG	6 cut(s)	146, 194, 201, 217, 222, 274
Hpy188I	TCNGA	5 cut(s)	26, 41, 142, 349, 358
Hpy188III	TCNNGA	3 cut(s)	194, 228, 274
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	182
Hsp92I	GRCGYC	2 cut(s)	48, 162
Hsp92II	CATG	2 cut(s)	136, 316
HspAI	GCGC	3 cut(s)	162, 205, 236
KasI	GGCGCC	1 cut(s)	161
Kpn2I	TCCGGA	2 cut(s)	193, 273
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	196, 276
Lsp1109I	GCAGC	1 cut(s)	280
MalI	GATC	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	1 cut(s)	36
MboII	GAAGA	4 cut(s)	118, 266, 289, 292
MhlI	GDGCHC	1 cut(s)	121
Mly113I	GGCGCC	1 cut(s)	162
MmeI	TCCRAC	4 cut(s)	49, 132, 165, 336
MnlI	CCTC	7 cut(s)	21, 61, 67, 73, 177, 304, 355
MroI	TCCGGA	2 cut(s)	193, 273
MspI	CCGG	6 cut(s)	146, 194, 201, 217, 222, 274
MspR9I	CCNGG	4 cut(s)	146, 202, 222, 223
Mva1269I	GAATGC	1 cut(s)	299
MvnI	CGCG	2 cut(s)	207, 236
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	4 cut(s)	146, 202, 222, 223
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	136, 316
NlaIV	GGNNCC	5 cut(s)	119, 120, 163, 192, 226
NmeAIII	GCCGAG	1 cut(s)	316
NspI	RCATGY	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	131
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	82, 178, 197, 231
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	89, 174, 270
PluTI	GGCGCC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	238
PspN4I	GGNNCC	5 cut(s)	119, 120, 163, 192, 226
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	5 cut(s)	117, 118, 219, 225, 358
RsaI	GTAC	2 cut(s)	187, 317
RsaNI	GTAC	2 cut(s)	186, 316
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	3 cut(s)	88, 173, 269
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	5 cut(s)	117, 118, 219, 225, 358
ScrFI	CCNGG	4 cut(s)	146, 202, 222, 223
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	2 cut(s)	273, 296
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	225, 358
SmaI	CCCGGG	1 cut(s)	223
SsiI	CCGC	9 cut(s)	54, 60, 88, 99, 122, 170, 173, 297, 324
SspDI	GGCGCC	1 cut(s)	161
StyD4I	CCNGG	4 cut(s)	144, 200, 220, 221
TaqI	TCGA	1 cut(s)	35
TauI	GCSGC	2 cut(s)	90, 175
TfiI	GAWTC	4 cut(s)	82, 178, 197, 231
TseI	GCWGC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	266
TspMI	CCCGGG	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	225, 358
XceI	RCATGY	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmaI	CCCGGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.