Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Forward (+)

20569603 .. 20570225

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCCACCAATCTCATCCATTTTCGGCCCACCCTGATCGGGCCGCATGCCACCGGAAACCGAAAGCCCGACTCAGTTACCCGGAAAGGCTCGGCGTCCAAGTGGTGGACCCCCCTATTCGGGTGGTCCTCCGAACCCGACTACATTGACTCCCACTCGAAGACCGAGTCCCGGGACAAGGCCGAGAGCGGAGCGGACTCGGGCCCCGACTCGAAACCGTGGCGATCTCGGTTCGCGCCTGGTTGCTTCACGGAGGAGAAGGCGAGGCAGCTCCGGATCAAGACCATGGAGACGGAGTCGTTTCACGACGCCATGTACCACTCATCAATCGCCTCCAGGCTGGCCTCCGATTTCAAGAACCGATCCGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.0

Weight (kDa)

9.16

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccBSI	CCGCTC	2 cut(s)	189, 194
AccII	CGCG	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	3 cut(s)	44, 189, 194
AclWI	GGATC	2 cut(s)	284, 357
AcyI	GRCGYC	2 cut(s)	95, 309
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	6 cut(s)	39, 105, 119, 120, 171, 178
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	238, 335
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	284, 357
Ama87I	CYCGRG	2 cut(s)	171, 199
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	5 cut(s)	26, 41, 180, 202, 342
ApaI	GGGCCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	6 cut(s)	27, 41, 108, 126, 202, 203
AsuC2I	CCSGG	3 cut(s)	82, 172, 173
AvaI	CYCGRG	2 cut(s)	171, 199
AvaII	GGWCC	2 cut(s)	108, 126
BaeGI	GKGCMC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	240, 337
BcnI	CCSGG	3 cut(s)	82, 172, 173
BcoDI	GTCTC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	44, 269
BlsI	GCNGC	2 cut(s)	45, 270
Bme1390I	CCNGG	5 cut(s)	82, 172, 173, 240, 337
Bme18I	GGWCC	2 cut(s)	108, 126
BmeT110I	CYCGRG	2 cut(s)	171, 199
BmgT120I	GGNCC	6 cut(s)	27, 41, 108, 126, 202, 203
BmiI	GGNNCC	3 cut(s)	110, 204, 205
BmrFI	CCNGG	5 cut(s)	82, 172, 173, 240, 337
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	319
BpuMI	CCSGG	3 cut(s)	82, 172, 173
BsaHI	GRCGYC	2 cut(s)	95, 309
BsaJI	CCNNGG	3 cut(s)	171, 218, 285
BsaWI	WCCGGW	2 cut(s)	53, 273
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 281, 311
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 105, 119, 120, 171, 178
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	240, 337
BseDI	CCNNGG	3 cut(s)	171, 218, 285
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	6 cut(s)	39, 105, 119, 120, 171, 178
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	5 cut(s)	28, 43, 182, 204, 344
BsiHKCI	CYCGRG	2 cut(s)	171, 199
BsiSI	CCGG	4 cut(s)	54, 82, 172, 274
BslFI	GGGAC	2 cut(s)	154, 188
BslI	CCNNNNNNNGG	6 cut(s)	39, 105, 119, 120, 171, 178
BsmAI	GTCTC	1 cut(s)	284
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	154, 188
BsnI	GGCC	5 cut(s)	28, 43, 182, 204, 344
BsoBI	CYCGRG	2 cut(s)	171, 199
Bsp120I	GGGCCC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	36, 224, 276, 362, 367
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	3 cut(s)	44, 189, 194
BspANI	GGCC	5 cut(s)	28, 43, 182, 204, 344
BspCNI	CTCAG	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	3 cut(s)	110, 204, 205
BspPI	GGATC	2 cut(s)	284, 357
BsrBI	CCGCTC	2 cut(s)	189, 194
BssECI	CCNNGG	3 cut(s)	171, 218, 285
BssMI	GATC	5 cut(s)	36, 224, 276, 362, 367
BssNI	GRCGYC	2 cut(s)	95, 309
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	240, 337
Bst4CI	ACNGT	1 cut(s)	219
BstACI	GRCGYC	2 cut(s)	95, 309
BstC8I	GCNNGC	2 cut(s)	48, 342
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	2 cut(s)	218, 285
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	5 cut(s)	39, 227, 279, 365, 370
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	5 cut(s)	36, 224, 276, 362, 367
BstNI	CCWGG	2 cut(s)	240, 337
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	5 cut(s)	80, 170, 171, 238, 335
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	5 cut(s)	28, 43, 182, 204, 344
BtgI	CCRYGG	2 cut(s)	218, 285
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	48, 342
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	6 cut(s)	27, 41, 108, 126, 202, 203
Cfr9I	CCCGGG	1 cut(s)	171
CseI	GACGC	2 cut(s)	84, 317
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	47, 286, 313
CviJI	RGCY	9 cut(s)	28, 43, 67, 90, 182, 204, 271, 340, 344
CviKI_1	RGCY	9 cut(s)	28, 43, 67, 90, 182, 204, 271, 340, 344
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	5 cut(s)	38, 226, 278, 364, 369
DpnII	GATC	5 cut(s)	36, 224, 276, 362, 367
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	108, 126
Eco88I	CYCGRG	2 cut(s)	171, 199
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	238, 335
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	3 cut(s)	50, 289, 316
FaiI	YATR	4 cut(s)	48, 287, 314, 373
FaqI	GGGAC	2 cut(s)	154, 188
FatI	CATG	3 cut(s)	46, 285, 312
Fnu4HI	GCNGC	2 cut(s)	44, 269
FokI	GGATG	1 cut(s)	2
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	44, 269
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	44, 269
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	5 cut(s)	28, 43, 182, 204, 344
HapII	CCGG	4 cut(s)	54, 82, 172, 274
HgaI	GACGC	2 cut(s)	84, 317
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	2 cut(s)	95, 309
Hin1II	CATG	3 cut(s)	50, 289, 316
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	6 cut(s)	71, 149, 167, 197, 209, 296
HpaII	CCGG	4 cut(s)	54, 82, 172, 274
Hpy166II	GTNNAC	2 cut(s)	6, 108
Hpy188I	TCNGA	3 cut(s)	133, 349, 367
Hpy188III	TCNNGA	4 cut(s)	274, 280, 305, 355
Hpy8I	GTNNAC	2 cut(s)	6, 108
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	73
Hsp92I	GRCGYC	2 cut(s)	95, 309
Hsp92II	CATG	3 cut(s)	50, 289, 316
HspAI	GCGC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	36, 224, 276, 362, 367
LmnI	GCTCC	2 cut(s)	191, 276
Lsp1109I	GCAGC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	5 cut(s)	38, 226, 278, 364, 369
MbiI	CCGCTC	2 cut(s)	189, 194
MboI	GATC	5 cut(s)	36, 224, 276, 362, 367
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	206
MlyI	GAGTC	6 cut(s)	65, 143, 176, 191, 203, 305
MnlI	CCTC	5 cut(s)	139, 247, 258, 343, 355
MroI	TCCGGA	1 cut(s)	273
MspI	CCGG	4 cut(s)	54, 82, 172, 274
MspR9I	CCNGG	5 cut(s)	82, 172, 173, 240, 337
MvaI	CCWGG	2 cut(s)	240, 337
MvnI	CGCG	1 cut(s)	236
NciI	CCSGG	3 cut(s)	82, 172, 173
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	36, 224, 276, 362, 367
NlaIII	CATG	3 cut(s)	50, 289, 316
NlaIV	GGNNCC	3 cut(s)	110, 204, 205
NmeAIII	GCCGAG	2 cut(s)	71, 208
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PflFI	GACNNNGTC	2 cut(s)	166, 295
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	45, 270
PleI	GAGTC	6 cut(s)	65, 143, 175, 191, 203, 304
PpsI	GAGTC	6 cut(s)	65, 143, 175, 191, 203, 304
Psp6I	CCWGG	2 cut(s)	238, 335
PspGI	CCWGG	2 cut(s)	238, 335
PspN4I	GGNNCC	3 cut(s)	110, 204, 205
PspOMI	GGGCCC	1 cut(s)	202
PspPI	GGNCC	6 cut(s)	27, 41, 108, 126, 202, 203
PsyI	GACNNNGTC	2 cut(s)	166, 295
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SatI	GCNGC	2 cut(s)	44, 269
Sau3AI	GATC	5 cut(s)	36, 224, 276, 362, 367
Sau96I	GGNCC	6 cut(s)	27, 41, 108, 126, 202, 203
SchI	GAGTC	6 cut(s)	65, 143, 176, 191, 203, 305
ScrFI	CCNGG	5 cut(s)	82, 172, 173, 240, 337
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	1 cut(s)	273
SinI	GGWCC	2 cut(s)	108, 126
SmaI	CCCGGG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	50
SsiI	CCGC	3 cut(s)	44, 189, 194
StyD4I	CCNGG	5 cut(s)	80, 170, 171, 238, 335
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	158, 212
TaqII	GACCGA	1 cut(s)	179
TauI	GCSGC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	268
TspGWI	ACGGA	2 cut(s)	266, 308
TspMI	CCCGGG	1 cut(s)	171
Tth111I	GACNNNGTC	2 cut(s)	166, 295
Van91I	CCANNNNNTGG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	108, 126
XceI	RCATGY	1 cut(s)	50
XmaI	CCCGGG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.