Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004798

Physical Location & Seq

Genomic Coordinates Reverse (-)

13931979 .. 13932344

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1177900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCCACCAGTCTCATCCACTTCCGGCCAAACCTAGCCGCGCCATGCGCCGCCGGAAATCGAAAGTCCAGCTCAGTTGGCGGGAAAGGCTTGCCGTTCAAGTGGTGGACCCCGCTCTTCGGGTGGTCATCCGAACCCGACTACATTGACCCGGAGGCAAAGACAGAGTCGGACGACAAGGCCCAGGGCGGAGCAGCCGACTCGAAACCACGGCGATCGCGGTTCTCGCCTGGCTGCTTCACGGAGGAGAAGGCGCGGCAGCTCCGGATGAAGACGATCGAAACGGAGACGTTTCATGACGCCATGTACCACTCGTCGATCGCCACCAGACTCGCCTCCGATTTTAAGAACCGGTCCGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.47

Weight (kDa)

9.0

Isoelectric Point (pI)

61.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52720 AT3G15630
fragaria_vesca	FvH4_1g03940
malus_domestica	MD02G1037700.v1.1 MD15G1177900.v1.1 MD17G1203000.v1.1
prunus_persica	Prupe.3G078300_v2.0.a1 Prupe.7G237500_v2.0.a1
pyrus_communis	pycom02g03090 pycom15g15930
rosa_chinensis	RchiOBHm_Chr2g0089411 RchiOBHm_Chr2g0136881
rosa_laevigata	RLG00000016024 RLG00000019585
rosa_multiflora	Rmu_sc0000197.1_g000020 Rmu_sc0001299.1_g000002 Rmu_sc0018730.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107900 Rroxscaffold_2G00151980
rosa_rugosa	Rorug02G0000300 Rorug02G0334900
rosa_samantha	Rh2AG045700 Rh2AG385000 Rh2BG044200 Rh2BG391900 Rh2CG046100 Rh2CG372100 Rh2DG045600 Rh2DG408300
rosa_wichuraiana	Rw2G003690 Rw2G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	3 cut(s)	41, 220, 256
AccIII	TCCGGA	1 cut(s)	264
AciI	CCGC	7 cut(s)	39, 51, 81, 113, 189, 220, 256
AcoI	YGGCCR	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	183, 229
AluBI	AGCT	2 cut(s)	72, 262
AluI	AGCT	2 cut(s)	72, 262
Alw26I	GTCTC	2 cut(s)	17, 281
Aor13HI	TCCGGA	1 cut(s)	264
AoxI	GGCC	2 cut(s)	26, 180
ApeKI	GCWGC	3 cut(s)	194, 234, 259
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AsiGI	ACCGGT	1 cut(s)	351
AsiSI	GCGATCGC	1 cut(s)	218
AspLEI	GCGC	3 cut(s)	43, 50, 256
AspS9I	GGNCC	3 cut(s)	108, 181, 354
AsuC2I	CCSGG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	108, 354
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	206, 221, 271
BceAI	ACGGC	2 cut(s)	79, 227
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	2 cut(s)	185, 231
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	17, 281
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	6 cut(s)	39, 51, 195, 235, 257, 260
BlsI	GCNGC	6 cut(s)	40, 52, 196, 236, 258, 261
Bme1390I	CCNGG	3 cut(s)	152, 185, 231
Bme18I	GGWCC	2 cut(s)	108, 354
BmgT120I	GGNCC	3 cut(s)	108, 181, 354
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	3 cut(s)	152, 185, 231
BpiI	GAAGAC	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	183, 184, 209
BsaWI	WCCGGW	2 cut(s)	264, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	185, 231
BseDI	CCNNGG	3 cut(s)	183, 184, 209
BseGI	GGATG	3 cut(s)	15, 128, 273
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	206, 221, 271
Bsh1236I	CGCG	3 cut(s)	41, 220, 256
Bsh1285I	CGRYCG	3 cut(s)	218, 279, 321
BshFI	GGCC	2 cut(s)	28, 182
BshTI	ACCGGT	1 cut(s)	351
BsiEI	CGRYCG	3 cut(s)	218, 279, 321
BsiSI	CCGG	5 cut(s)	25, 54, 152, 265, 352
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	17, 281
BsmBI	CGTCTC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	28, 182
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	215, 276, 318, 358
BspACI	CCGC	7 cut(s)	39, 51, 81, 113, 189, 220, 256
BspANI	GGCC	2 cut(s)	28, 182
BspCNI	CTCAG	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	264
BspFNI	CGCG	3 cut(s)	41, 220, 256
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	183, 184, 209
BssMI	GATC	4 cut(s)	215, 276, 318, 358
BssNI	GRCGYC	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	185, 231
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	15, 128, 273
BstFNI	CGCG	3 cut(s)	41, 220, 256
BstHHI	GCGC	3 cut(s)	43, 50, 256
BstKTI	GATC	4 cut(s)	218, 279, 321, 361
BstMAI	GTCTC	2 cut(s)	17, 281
BstMBI	GATC	4 cut(s)	215, 276, 318, 358
BstMCI	CGRYCG	3 cut(s)	218, 279, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 78, 87, 226
BstNI	CCWGG	2 cut(s)	185, 231
BstSCI	CCNGG	3 cut(s)	150, 183, 229
BstUI	CGCG	3 cut(s)	41, 220, 256
BstV1I	GCAGC	3 cut(s)	206, 221, 271
BstV2I	GAAGAC	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	28, 182
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	15, 128, 273
Cac8I	GCNNGC	1 cut(s)	92
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	3 cut(s)	43, 50, 256
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	108, 181, 354
CpoI	CGGWCCG	1 cut(s)	354
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	307
CspAI	ACCGGT	1 cut(s)	351
CspI	CGGWCCG	1 cut(s)	354
CviAII	CATG	3 cut(s)	45, 296, 304
CviJI	RGCY	8 cut(s)	28, 38, 72, 90, 182, 197, 234, 262
CviKI_1	RGCY	8 cut(s)	28, 38, 72, 90, 182, 197, 234, 262
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	4 cut(s)	217, 278, 320, 360
DpnII	GATC	4 cut(s)	215, 276, 318, 358
EaeI	YGGCCR	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	108, 354
EcoRII	CCWGG	2 cut(s)	183, 229
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	3 cut(s)	48, 299, 307
FaiI	YATR	3 cut(s)	46, 297, 305
FatI	CATG	3 cut(s)	44, 295, 303
FauI	CCCGC	2 cut(s)	74, 120
Fnu4HI	GCNGC	6 cut(s)	39, 51, 195, 235, 257, 260
FokI	GGATG	3 cut(s)	2, 115, 280
Fsp4HI	GCNGC	6 cut(s)	39, 51, 195, 235, 257, 260
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	3 cut(s)	42, 49, 255
GluI	GCNGC	6 cut(s)	39, 51, 195, 235, 257, 260
HaeIII	GGCC	2 cut(s)	28, 182
HapII	CCGG	5 cut(s)	25, 54, 152, 265, 352
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	3 cut(s)	43, 50, 256
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	48, 299, 307
Hin6I	GCGC	3 cut(s)	41, 48, 254
HinP1I	GCGC	3 cut(s)	41, 48, 254
HinfI	GANTC	3 cut(s)	167, 200, 330
HpaII	CCGG	5 cut(s)	25, 54, 152, 265, 352
Hpy166II	GTNNAC	2 cut(s)	6, 108
Hpy188I	TCNGA	4 cut(s)	133, 172, 340, 358
Hpy188III	TCNNGA	2 cut(s)	265, 296
Hpy8I	GTNNAC	2 cut(s)	6, 108
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 78, 87, 226
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	48, 299, 307
HspAI	GCGC	3 cut(s)	41, 48, 254
Kpn2I	TCCGGA	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	215, 276, 318, 358
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	191, 267
Lsp1109I	GCAGC	3 cut(s)	206, 221, 271
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	290
MalI	GATC	4 cut(s)	217, 278, 320, 360
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	4 cut(s)	215, 276, 318, 358
MboII	GAAGA	2 cut(s)	109, 283
MlyI	GAGTC	3 cut(s)	176, 194, 324
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	148, 238, 346
MroI	TCCGGA	1 cut(s)	264
MseI	TTAA	1 cut(s)	345
MspI	CCGG	5 cut(s)	25, 54, 152, 265, 352
MspR9I	CCNGG	3 cut(s)	152, 185, 231
MvaI	CCWGG	2 cut(s)	185, 231
MvnI	CGCG	3 cut(s)	41, 220, 256
MwoI	GCNNNNNNNGC	4 cut(s)	47, 78, 87, 226
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	215, 276, 318, 358
NlaIII	CATG	3 cut(s)	48, 299, 307
NlaIV	GGNNCC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	166
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	6 cut(s)	40, 52, 196, 236, 258, 261
Ple19I	CGATCG	3 cut(s)	218, 279, 321
PleI	GAGTC	3 cut(s)	175, 194, 324
PpsI	GAGTC	3 cut(s)	175, 194, 324
Psp6I	CCWGG	2 cut(s)	183, 229
PspGI	CCWGG	2 cut(s)	183, 229
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	108, 181, 354
PsyI	GACNNNGTC	1 cut(s)	166
PvuI	CGATCG	3 cut(s)	218, 279, 321
RgaI	GCGATCGC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
Rsr2I	CGGWCCG	1 cut(s)	354
RsrII	CGGWCCG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	6 cut(s)	39, 51, 195, 235, 257, 260
Sau3AI	GATC	4 cut(s)	215, 276, 318, 358
Sau96I	GGNCC	3 cut(s)	108, 181, 354
SchI	GAGTC	3 cut(s)	176, 194, 324
ScrFI	CCNGG	3 cut(s)	152, 185, 231
SetI	ASST	4 cut(s)	36, 74, 264, 293
SfaAI	GCGATCGC	1 cut(s)	218
SgfI	GCGATCGC	1 cut(s)	218
SinI	GGWCC	2 cut(s)	108, 354
SsiI	CCGC	7 cut(s)	39, 51, 81, 113, 189, 220, 256
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	150, 183, 229
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	4 cut(s)	61, 203, 279, 317
TauI	GCSGC	3 cut(s)	41, 53, 259
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseI	GCWGC	3 cut(s)	194, 234, 259
TspDTI	ATGAA	2 cut(s)	284, 284
TspGWI	ACGGA	2 cut(s)	257, 299
Tth111I	GACNNNGTC	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	108, 354
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.