AT1G52940

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
19716402 .. 19723725
7324 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52940.1

Sequence Viewer

Length: 729 bp
ATGTCACTCGAAACATTTCCTCCTCCGGCCGGTTATAACGCTCCTGAACAAGTTCACATAACGCAAGGAGATCACAATGGTCGAGGTATGATCATCTCGTGGGTAACGTCATTAAATGAGGATGGTTCTAATGTCGTAACATATTGGATCGCAAGTAGTGATGGTAGTGATAATAAGAGTGTTATAGCGACAACTTCGTCCTATAGATATTTTGATTACACATCTGGTTATCTTCACCATGCCATCATAAAAGAGCTTGAGTATAAAACTAAATACTTTTACGAGCTTGGAACAGGTCGCTCCACTAGACAATTCAACTTGACTCCTCCAAAAGTCGGTCCAGATGTTCCTTATACATTTGGTGTTATAGGTGATCTTGGACAAACATATGCCTCTAACCAGACATTGTACAACTACATGTCGAACCCGAAAGGCCAAGCGGTGCTTTTTGCCGGAGATTTGTCTTATGCTGATGACCATCCTAACCACGACCAAAGCAAATGGGATTCATACGGCCGGTTTGTGGAACCAAGCGCCGCATATCAGCCTTGGATTTGGGCTGCAGGGAACCACGAGATAGATTACGCCCAAAGCATAGGCGAGACTCAACCCTTTAAACCGTACAAGAACCGTTACCATGTTCCGTATAGAGCCTCACAGAGTACATCTCCACTTTGGTACTCAATCAAACGAGCCTCGGCTTACATCATCATACTCTCCTCTTTATGA

Protein Analysis

242

Amino Acids

27.29

Weight (kDa)

6.04

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 15 - 104 9.4e-18 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 119 - 234 1.1e-13 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009780)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AasI GACNNNNNNGTC 1 cut(s) 196
AciI CCGC 2 cut(s) 440, 537
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 2 cut(s) 27, 514
AfaI GTAC 4 cut(s) 410, 623, 664, 680
AfiI CCNNNNNNNGG 3 cut(s) 29, 335, 523
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 1 cut(s) 316
AluBI AGCT 2 cut(s) 256, 286
AluI AGCT 2 cut(s) 256, 286
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 1 cut(s) 155
AoxI GGCC 3 cut(s) 27, 433, 514
ApeKI GCWGC 1 cut(s) 560
Asp700I GAANNNNTTC 2 cut(s) 15, 51
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 227, 383
AvaII GGWCC 1 cut(s) 338
BauI CACGAG 2 cut(s) 97, 572
BbvI GCAGC 1 cut(s) 547
BccI CCATC 4 cut(s) 116, 155, 251, 486
BceAI ACGGC 1 cut(s) 529
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 2 cut(s) 202, 561
BfoI RGCGCY 1 cut(s) 537
BisI GCNGC 2 cut(s) 537, 561
BlsI GCNGC 2 cut(s) 538, 562
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 528, 569
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 548, 696
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 335, 523
Bse118I RCCGGY 2 cut(s) 29, 516
Bse8I GATNNNNATC 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 548, 696
BseGI GGATG 2 cut(s) 127, 478
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 3 cut(s) 29, 335, 523
BseRI GAGGAG 3 cut(s) 12, 315, 709
BseX3I CGGCCG 2 cut(s) 27, 514
BseXI GCAGC 1 cut(s) 547
Bsh1285I CGRYCG 2 cut(s) 30, 517
BshFI GGCC 3 cut(s) 29, 435, 516
BsiEI CGRYCG 2 cut(s) 30, 517
BsiSI CCGG 4 cut(s) 26, 30, 453, 517
BslI CCNNNNNNNGG 3 cut(s) 29, 335, 523
BsmAI GTCTC 1 cut(s) 596
BsnI GGCC 3 cut(s) 29, 435, 516
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 4 cut(s) 70, 90, 147, 373
BspACI CCGC 2 cut(s) 440, 537
BspANI GGCC 3 cut(s) 29, 435, 516
BspLI GGNNCC 2 cut(s) 528, 569
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 1 cut(s) 155
BsrFI RCCGGY 2 cut(s) 29, 516
BsrGI TGTACA 1 cut(s) 408
BssAI RCCGGY 2 cut(s) 29, 516
BssECI CCNNGG 2 cut(s) 548, 696
BssMI GATC 4 cut(s) 70, 90, 147, 373
BssSI CACGAG 2 cut(s) 97, 572
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 2 cut(s) 97, 572
Bst4CI ACNGT 2 cut(s) 621, 632
BstAUI TGTACA 1 cut(s) 408
BstF5I GGATG 2 cut(s) 127, 478
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 4 cut(s) 73, 93, 150, 376
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 4 cut(s) 70, 90, 147, 373
BstMCI CGRYCG 2 cut(s) 30, 517
BstNSI RCATGY 1 cut(s) 421
BstSFI CTRYAG 2 cut(s) 202, 561
BstV1I GCAGC 1 cut(s) 547
BstZI CGGCCG 2 cut(s) 27, 514
BsuRI GGCC 3 cut(s) 29, 435, 516
BtsCI GGATG 2 cut(s) 127, 478
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 2 cut(s) 29, 516
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 4 cut(s) 409, 622, 663, 679
CviAII CATG 3 cut(s) 239, 418, 638
CviQI GTAC 4 cut(s) 409, 622, 663, 679
DpnI GATC 4 cut(s) 72, 92, 149, 375
DpnII GATC 4 cut(s) 70, 90, 147, 373
DraI TTTAAA 1 cut(s) 616
DrdI GACNNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 27, 514
EagI CGGCCG 2 cut(s) 27, 514
EclXI CGGCCG 2 cut(s) 27, 514
Eco130I CCWWGG 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 338
Eco52I CGGCCG 2 cut(s) 27, 514
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 3 cut(s) 242, 421, 641
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FatI CATG 3 cut(s) 238, 417, 637
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 537, 561
FokI GGATG 2 cut(s) 134, 465
Fsp4HI GCNGC 2 cut(s) 537, 561
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 535
GluI GCNGC 2 cut(s) 537, 561
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 3 cut(s) 29, 435, 516
HapII CCGG 4 cut(s) 26, 30, 453, 517
HhaI GCGC 1 cut(s) 536
Hin1II CATG 3 cut(s) 242, 421, 641
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HinfI GANTC 3 cut(s) 322, 506, 604
HpaII CCGG 4 cut(s) 26, 30, 453, 517
HphI GGTGA 2 cut(s) 227, 383
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 44, 341
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 621, 632
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 563
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 3 cut(s) 242, 421, 641
HspAI GCGC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 70, 90, 147, 373
LmnI GCTCC 2 cut(s) 46, 305
Lsp1109I GCAGC 1 cut(s) 547
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 4 cut(s) 3, 103, 136, 632
MalI GATC 4 cut(s) 72, 92, 149, 375
MboI GATC 4 cut(s) 70, 90, 147, 373
MboII GAAGA 1 cut(s) 224
MluCI AATT 1 cut(s) 311
MlyI GAGTC 2 cut(s) 316, 598
MnlI CCTC 8 cut(s) 30, 33, 77, 112, 336, 403, 664, 706
MroXI GAANNNNTTC 2 cut(s) 15, 51
MseI TTAA 2 cut(s) 113, 615
MspI CCGG 4 cut(s) 26, 30, 453, 517
NdeI CATATG 1 cut(s) 388
NdeII GATC 4 cut(s) 70, 90, 147, 373
NlaIII CATG 3 cut(s) 242, 421, 641
NlaIV GGNNCC 2 cut(s) 528, 569
NmeAIII GCCGAG 1 cut(s) 677
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 421
PciI ACATGT 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 15, 51
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 2 cut(s) 538, 562
PleI GAGTC 2 cut(s) 316, 598
PpsI GAGTC 2 cut(s) 316, 598
PscI ACATGT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 528, 569
PspPI GGNCC 1 cut(s) 338
PstI CTGCAG 1 cut(s) 565
RsaI GTAC 4 cut(s) 410, 623, 664, 680
RsaNI GTAC 4 cut(s) 409, 622, 663, 679
SaqAI TTAA 2 cut(s) 113, 615
SatI GCNGC 2 cut(s) 537, 561
Sau3AI GATC 4 cut(s) 70, 90, 147, 373
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 2 cut(s) 316, 598
SetI ASST 6 cut(s) 88, 110, 258, 288, 298, 373
SfcI CTRYAG 2 cut(s) 202, 561
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 311
SsiI CCGC 2 cut(s) 440, 537
SspMI CTAG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 621, 632
TaiI ACGT 1 cut(s) 110
TaqI TCGA 3 cut(s) 9, 82, 422
TaqII GACCGA 1 cut(s) 326
TasI AATT 1 cut(s) 311
TatI WGTACW 2 cut(s) 408, 662
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 113, 615
Tru9I TTAA 2 cut(s) 113, 615
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 498
TspGWI ACGGA 1 cut(s) 633
VpaK11BI GGWCC 1 cut(s) 338
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 15, 51
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.