Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

60442079 .. 60445425

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG423500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGGAAGAAGACAGAGATGGACTACTCTACTGGGCTTGTAGCGGCTACCATACTAGTCCTGATTCTTTCTGTCAAGCTTTGTGAAGGTGGGATCACAAGTAGTTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTGTTCCGATCCCCTCCTGGGTATAATTCCCCTCAACAGGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAAATGAACCGGGTTCAAGTACTGTGGTGTACTGGGCAGACAATAGTAGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTACTTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAGTTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATAACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTAAACCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCTTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCTATCAACCTTGGATTTGGACTGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGGTGAAAGTATACCATTCAAACCATATACAAATCGCTTTTTTGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGTTGCCTAAAGTGAACAGAACTGAGACACCATGGCTTATTGTTCTTGTGCATTGTCCAATGTATAGCAGCTATGTGCATCATTATATGGAAGGTGAAACCATGAGGGTTATGTATGAGCAATGGTTCGTGGATTATAAAGTAGATGTTGTCTTTGCCGGTCATGTTCATGCCTATGAACGATCTGTAAGTAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

370

Amino Acids

42.72

Weight (kDa)

6.49

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	62 - 154	1.1e-20	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	165 - 363	1.3e-26	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	458, 1050
AccI	GTMKAC	2 cut(s)	748, 1105
AciI	CCGC	2 cut(s)	44, 704
AclWI	GGATC	3 cut(s)	101, 156, 219
AcuI	CTGAAG	2 cut(s)	780, 822
AfaI	GTAC	6 cut(s)	271, 281, 344, 379, 805, 821
AfiI	CCNNNNNNNGG	6 cut(s)	171, 190, 473, 508, 572, 737
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	267, 349, 534, 757, 908
AhlI	ACTAGT	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	79, 794, 836, 984
AluI	AGCT	4 cut(s)	79, 794, 836, 984
Alw26I	GTCTC	2 cut(s)	436, 932
AlwI	GGATC	3 cut(s)	101, 156, 219
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	677, 981
AspS9I	GGNCC	3 cut(s)	127, 476, 598
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	256, 752, 1019
AvaII	GGWCC	3 cut(s)	127, 476, 598
BarI	GAAGNNNNNNTAC	2 cut(s)	631, 663
BauI	CACGAG	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	664, 993
BccI	CCATC	3 cut(s)	13, 636, 833
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	436, 932
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	45, 678, 982
BlsI	GCNGC	3 cut(s)	46, 679, 983
BmcAI	AGTACT	2 cut(s)	271, 344
Bme1390I	CCNGG	2 cut(s)	171, 261
Bme18I	GGWCC	3 cut(s)	127, 476, 598
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	127, 476, 598
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	2 cut(s)	171, 261
BmrI	ACTGGG	2 cut(s)	42, 292
BmsI	GCATC	2 cut(s)	604, 1000
BmuI	ACTGGG	2 cut(s)	42, 292
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	2 cut(s)	534, 618
BsaJI	CCNNGG	3 cut(s)	170, 689, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 190, 473, 508, 572, 737
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	2 cut(s)	37, 287
Bse3DI	GCAATG	1 cut(s)	1040
Bse8I	GATNNNNATC	2 cut(s)	534, 618
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	170, 689, 944
BseJI	GATNNNNATC	2 cut(s)	534, 618
BseLI	CCNNNNNNNGG	6 cut(s)	171, 190, 473, 508, 572, 737
BseMI	GCAATG	1 cut(s)	1040
BseMII	CTCAG	2 cut(s)	905, 927
BseNI	ACTGG	2 cut(s)	37, 287
BseRI	GAGGAG	3 cut(s)	720, 801, 879
BseXI	GCAGC	2 cut(s)	664, 993
BseYI	CCCAGC	1 cut(s)	565
BshFI	GGCC	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	260, 1071
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	6 cut(s)	171, 190, 473, 508, 572, 737
BsmAI	GTCTC	2 cut(s)	436, 932
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	93, 161, 211, 1094
Bsp19I	CCATGG	1 cut(s)	944
BspACI	CCGC	2 cut(s)	44, 704
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	2 cut(s)	904, 928
BspHI	TCATGA	2 cut(s)	214, 628
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	3 cut(s)	101, 156, 219
BsrDI	GCAATG	1 cut(s)	1040
BsrFI	RCCGGY	1 cut(s)	1070
BsrI	ACTGG	2 cut(s)	37, 287
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	3 cut(s)	170, 689, 944
BssMI	GATC	4 cut(s)	93, 161, 211, 1094
BssNAI	GTATAC	1 cut(s)	749
BssSI	CACGAG	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	689, 944
Bst1107I	GTATAC	1 cut(s)	749
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	149, 274, 377, 583
BstDEI	CTNAG	2 cut(s)	891, 936
BstDSI	CCRYGG	1 cut(s)	944
BstKTI	GATC	4 cut(s)	96, 164, 214, 1097
BstMAI	GTCTC	2 cut(s)	436, 932
BstMBI	GATC	4 cut(s)	93, 161, 211, 1094
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	169, 259
BstV1I	GCAGC	2 cut(s)	664, 993
BstV2I	GAAGAC	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	749
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	944
BtrI	CACGTC	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	154, 373
CciI	TCATGA	2 cut(s)	214, 628
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	3 cut(s)	127, 476, 598
Csp6I	GTAC	6 cut(s)	270, 280, 343, 378, 804, 820
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	8 cut(s)	131, 215, 629, 651, 945, 1015, 1076, 1082
CviJI	RGCY	9 cut(s)	37, 47, 79, 501, 794, 836, 904, 949, 984
CviKI_1	RGCY	9 cut(s)	37, 47, 79, 501, 794, 836, 904, 949, 984
CviQI	GTAC	6 cut(s)	270, 280, 343, 378, 804, 820
DdeI	CTNAG	2 cut(s)	891, 936
DpnI	GATC	4 cut(s)	95, 163, 213, 1096
DpnII	GATC	4 cut(s)	93, 161, 211, 1094
Eco130I	CCWWGG	2 cut(s)	689, 944
Eco47I	GGWCC	3 cut(s)	127, 476, 598
Eco57I	CTGAAG	2 cut(s)	780, 822
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	689, 944
ErhI	CCWWGG	2 cut(s)	689, 944
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	8 cut(s)	134, 218, 632, 654, 948, 1018, 1079, 1085
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	8 cut(s)	130, 214, 628, 650, 944, 1014, 1075, 1081
FauI	CCCGC	1 cut(s)	697
FauNDI	CATATG	1 cut(s)	874
FblI	GTMKAC	2 cut(s)	748, 1105
Fnu4HI	GCNGC	3 cut(s)	45, 678, 982
Fsp4HI	GCNGC	3 cut(s)	45, 678, 982
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	3 cut(s)	45, 678, 982
GsaI	CCCAGC	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	2 cut(s)	260, 1071
Hin1II	CATG	8 cut(s)	134, 218, 632, 654, 948, 1018, 1079, 1085
HindIII	AAGCTT	2 cut(s)	77, 792
HinfI	GANTC	5 cut(s)	64, 247, 523, 530, 660
HpaII	CCGG	2 cut(s)	260, 1071
HphI	GGTGA	3 cut(s)	256, 752, 1019
Hpy166II	GTNNAC	4 cut(s)	280, 749, 928, 1106
Hpy188I	TCNGA	4 cut(s)	161, 306, 522, 799
Hpy188III	TCNNGA	7 cut(s)	61, 215, 479, 527, 629, 713, 829
Hpy8I	GTNNAC	4 cut(s)	280, 749, 928, 1106
HpyAV	CCTTC	3 cut(s)	80, 217, 998
HpyCH4III	ACNGT	4 cut(s)	149, 274, 377, 583
HpyCH4IV	ACGT	2 cut(s)	153, 445
HpyCH4V	TGCA	3 cut(s)	611, 964, 991
HpyF3I	CTNAG	2 cut(s)	891, 936
HpySE526I	ACGT	2 cut(s)	153, 445
Hsp92II	CATG	8 cut(s)	134, 218, 632, 654, 948, 1018, 1079, 1085
Kzo9I	GATC	4 cut(s)	93, 161, 211, 1094
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	2 cut(s)	664, 993
LweI	GCATC	2 cut(s)	604, 1000
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	153, 445
MaeIII	GTNAC	4 cut(s)	104, 149, 244, 362
MalI	GATC	4 cut(s)	95, 163, 213, 1096
MboI	GATC	4 cut(s)	93, 161, 211, 1094
MboII	GAAGA	3 cut(s)	19, 22, 651
MluCI	AATT	4 cut(s)	178, 349, 388, 717
MlyI	GAGTC	2 cut(s)	241, 517
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	2 cut(s)	1080, 1086
MspI	CCGG	2 cut(s)	260, 1071
MspR9I	CCNGG	2 cut(s)	171, 261
MvaI	CCWGG	1 cut(s)	171
NciI	CCSGG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	944
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	4 cut(s)	93, 161, 211, 1094
NlaIII	CATG	8 cut(s)	134, 218, 632, 654, 948, 1018, 1079, 1085
NlaIV	GGNNCC	1 cut(s)	599
NmeAIII	GCCGAG	1 cut(s)	848
NmuCI	GTSAC	2 cut(s)	149, 244
PagI	TCATGA	2 cut(s)	214, 628
PfeI	GAWTC	3 cut(s)	64, 530, 660
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	46, 679, 983
PleI	GAGTC	2 cut(s)	241, 517
PpsI	GAGTC	2 cut(s)	241, 517
PpuMI	RGGWCCY	1 cut(s)	598
PsiI	TTATAA	2 cut(s)	458, 1050
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	3 cut(s)	127, 476, 598
PspPPI	RGGWCCY	1 cut(s)	598
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	6 cut(s)	271, 281, 344, 379, 805, 821
RsaNI	GTAC	6 cut(s)	270, 280, 343, 378, 804, 820
RseI	CAYNNNNRTG	2 cut(s)	1080, 1086
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	3 cut(s)	45, 678, 982
Sau3AI	GATC	4 cut(s)	93, 161, 211, 1094
Sau96I	GGNCC	3 cut(s)	127, 476, 598
ScaI	AGTACT	2 cut(s)	271, 344
SchI	GAGTC	2 cut(s)	241, 517
ScrFI	CCNGG	2 cut(s)	171, 261
SfaNI	GCATC	2 cut(s)	604, 1000
SinI	GGWCC	3 cut(s)	127, 476, 598
SmiMI	CAYNNNNRTG	2 cut(s)	1080, 1086
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	4 cut(s)	178, 349, 388, 717
SsiI	CCGC	2 cut(s)	44, 704
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	169, 259
StyI	CCWWGG	2 cut(s)	689, 944
TaaI	ACNGT	4 cut(s)	149, 274, 377, 583
TaiI	ACGT	2 cut(s)	156, 448
TaqI	TCGA	1 cut(s)	538
TasI	AATT	4 cut(s)	178, 349, 388, 717
TatI	WGTACW	4 cut(s)	269, 279, 342, 803
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	64, 530, 660
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	154, 380
TseFI	GTSAC	2 cut(s)	149, 244
TseI	GCWGC	2 cut(s)	677, 981
Tsp45I	GTSAC	2 cut(s)	149, 244
TspDTI	ATGAA	7 cut(s)	185, 270, 359, 617, 652, 1070, 1104
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	154, 380
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	127, 476, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	2 cut(s)	748, 1105
XspI	CTAG	1 cut(s)	56
ZrmI	AGTACT	2 cut(s)	271, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.