Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006892.1

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

12432 .. 14735

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006892.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atggactactgtaccatactagtcctgattctttctgtcaagctttgtgaaagtgggatcacaagtagttacttgaggaacgatgacttggtccatgatatgcctttagacagtgacgtgttccgatcccctcctgggtataattcccctcaacaggttcatataacacaaggggatcatgaggggaagggagtgatcgtgtcttgggtgactccaaatgaacccggttcaagtactgtggtgtactgggcagacaatagtggcaatctgaaaaagactgcttatggcattgttcttacttacaagtacttcaattacacctctggttacattcatcactgtaccattaaaaatttggagtttgacaccaaatactactatcaagttgggattggggataccacgagacgtttttggtttattacccctcctaaagttggtcctgatgttccctatacttttggcctcataggggatattggtcagactcctgattcaaatcgaacacttactcattatgagttaaacccagcaaaaggacagacggtgttgttcgttggggacctctcttatgcagatgcttatccgtttcatgacaatagaagatgggatacatgggggagattcatagagagaaatgctgcctatcaaccttggatttggactgcgggaaatcacgaaattgattttgctcctcaatatggtgaaagtataccattcaaaccatatacaaatcgcttttttgttccatacaaagcttcagatagtacatctcctctgtggtactccatcaagagagcttcagcatatatcatagtcttgtcctcttactcggcatatggaaaatatactcctcagtataagtggcttgaaaaggagttgcctaaagtgaacagaactgagacaccatggcttattgttcttgtgcattgtccaatgtatagcagctatgtgcatcattatatggaaggtgaaaccatgagggttatgtatgagcaatggttcgtggattataaagtagatgttgtctttgccggtcatgttcatgcctatgaacgatctgaaaggatatcaaacattgcatacaacataacaaatggactttgcactcccataagtgaccaatcagcgccagtttacataacaattggagatggaggaaatctagaaggattggttaccgaaatgacagagccgcagccaagctactcggcatttcgtgaggctagctttggccatgggattcttgagatcaaaaacagaagctatgccttcttcagttggcataggaatcaagatggttatgcagtagaagctgattctttatggttacgcaacagatattggaaaactactttggaaaagtcatcgtccctaactgcgttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

462

Amino Acids

53.12

Weight (kDa)

6.01

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1014, 1387
AccI	GTMKAC	1 cut(s)	712
AciI	CCGC	2 cut(s)	668, 1196
AclWI	GGATC	3 cut(s)	65, 120, 183
AcoI	YGGCCR	1 cut(s)	1234
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	3 cut(s)	744, 786, 1261
AfaI	GTAC	7 cut(s)	13, 235, 245, 308, 343, 769, 785
AfiI	CCNNNNNNNGG	6 cut(s)	135, 154, 437, 472, 536, 701
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	5 cut(s)	231, 313, 498, 721, 872
AhlI	ACTAGT	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	4 cut(s)	71, 103, 1340, 1372
AluBI	AGCT	8 cut(s)	43, 758, 800, 948, 1206, 1230, 1266, 1316
AluI	AGCT	8 cut(s)	43, 758, 800, 948, 1206, 1230, 1266, 1316
Alw26I	GTCTC	2 cut(s)	400, 896
AlwI	GGATC	3 cut(s)	65, 120, 183
AoxI	GGCC	2 cut(s)	463, 1234
ApeKI	GCWGC	3 cut(s)	641, 945, 1198
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	1132
AspS9I	GGNCC	3 cut(s)	91, 440, 562
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	220, 716, 983
AsuNHI	GCTAGC	1 cut(s)	1226
AvaII	GGWCC	3 cut(s)	91, 440, 562
BaeI	ACNNNNGTAYC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	1236
BarI	GAAGNNNNNNTAC	2 cut(s)	595, 627
BauI	CACGAG	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	628, 957, 1210
BccI	CCATC	4 cut(s)	600, 797, 1148, 1292
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	2 cut(s)	391, 604
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	400, 896
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	3 cut(s)	20, 1166, 1227
BfoI	RGCGCY	1 cut(s)	1133
BfuI	GTATCC	2 cut(s)	391, 604
BisI	GCNGC	4 cut(s)	642, 946, 1196, 1199
BlsI	GCNGC	4 cut(s)	643, 947, 1197, 1200
BmcAI	AGTACT	2 cut(s)	235, 308
Bme1390I	CCNGG	2 cut(s)	135, 225
Bme18I	GGWCC	3 cut(s)	91, 440, 562
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	91, 440, 562
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	2 cut(s)	135, 225
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	568, 964
BmtI	GCTAGC	1 cut(s)	1230
BmuI	ACTGGG	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	94, 1268
BpuMI	CCSGG	1 cut(s)	225
BsaBI	GATNNNNATC	2 cut(s)	498, 582
BsaJI	CCNNGG	4 cut(s)	134, 653, 908, 1237
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	6 cut(s)	135, 154, 437, 472, 536, 701
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	2 cut(s)	251, 1133
Bse3DI	GCAATG	2 cut(s)	1004, 1077
Bse8I	GATNNNNATC	2 cut(s)	498, 582
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	4 cut(s)	134, 653, 908, 1237
BseJI	GATNNNNATC	2 cut(s)	498, 582
BseLI	CCNNNNNNNGG	6 cut(s)	135, 154, 437, 472, 536, 701
BseMI	GCAATG	2 cut(s)	1004, 1077
BseMII	CTCAG	2 cut(s)	869, 891
BseNI	ACTGG	2 cut(s)	251, 1133
BseRI	GAGGAG	3 cut(s)	684, 765, 843
BseXI	GCAGC	3 cut(s)	628, 957, 1210
BseYI	CCCAGC	1 cut(s)	529
BshFI	GGCC	2 cut(s)	465, 1236
BsiSI	CCGG	2 cut(s)	225, 1035
BslFI	GGGAC	2 cut(s)	575, 1357
BslI	CCNNNNNNNGG	6 cut(s)	135, 154, 437, 472, 536, 701
BsmAI	GTCTC	2 cut(s)	400, 896
BsmBI	CGTCTC	1 cut(s)	400
BsmFI	GGGAC	2 cut(s)	575, 1357
BsnI	GGCC	2 cut(s)	465, 1236
Bsp143I	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
Bsp19I	CCATGG	2 cut(s)	908, 1237
BspACI	CCGC	2 cut(s)	668, 1196
BspANI	GGCC	2 cut(s)	465, 1236
BspCNI	CTCAG	2 cut(s)	868, 892
BspHI	TCATGA	2 cut(s)	178, 592
BspLI	GGNNCC	1 cut(s)	563
BspOI	GCTAGC	1 cut(s)	1230
BspPI	GGATC	3 cut(s)	65, 120, 183
BsrDI	GCAATG	2 cut(s)	1004, 1077
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	2 cut(s)	251, 1133
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	4 cut(s)	134, 653, 908, 1237
BssMI	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
BssNAI	GTATAC	1 cut(s)	713
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	3 cut(s)	653, 908, 1237
Bst1107I	GTATAC	1 cut(s)	713
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	5 cut(s)	11, 113, 238, 341, 547
BstC8I	GCNNGC	1 cut(s)	1228
BstDEI	CTNAG	2 cut(s)	855, 900
BstDSI	CCRYGG	2 cut(s)	908, 1237
BstEII	GGTNACC	1 cut(s)	1177
BstH2I	RGCGCY	1 cut(s)	1133
BstHHI	GCGC	1 cut(s)	1132
BstKTI	GATC	6 cut(s)	60, 128, 178, 198, 1061, 1254
BstMAI	GTCTC	2 cut(s)	400, 896
BstMBI	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
BstMWI	GCNNNNNNNGC	1 cut(s)	1313
BstNI	CCWGG	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	1177
BstSCI	CCNGG	2 cut(s)	133, 223
BstV1I	GCAGC	3 cut(s)	628, 957, 1210
BstZ17I	GTATAC	1 cut(s)	713
BsuI	GTATCC	2 cut(s)	391, 604
BsuRI	GGCC	2 cut(s)	465, 1236
BtgI	CCRYGG	2 cut(s)	908, 1237
BtrI	CACGTC	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 337
Cac8I	GCNNGC	1 cut(s)	1228
CciI	TCATGA	2 cut(s)	178, 592
CfoI	GCGC	1 cut(s)	1132
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	3 cut(s)	91, 440, 562
Csp6I	GTAC	7 cut(s)	12, 234, 244, 307, 342, 768, 784
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	9 cut(s)	95, 179, 593, 615, 909, 979, 1040, 1046, 1238
CviQI	GTAC	7 cut(s)	12, 234, 244, 307, 342, 768, 784
DdeI	CTNAG	2 cut(s)	855, 900
DpnI	GATC	6 cut(s)	59, 127, 177, 197, 1060, 1253
DpnII	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
EaeI	YGGCCR	1 cut(s)	1234
Eco130I	CCWWGG	3 cut(s)	653, 908, 1237
Eco32I	GATATC	1 cut(s)	1071
Eco47I	GGWCC	3 cut(s)	91, 440, 562
Eco57I	CTGAAG	3 cut(s)	744, 786, 1261
Eco91I	GGTNACC	1 cut(s)	1177
EcoO109I	RGGNCCY	1 cut(s)	562
EcoO65I	GGTNACC	1 cut(s)	1177
EcoRII	CCWGG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	1071
EcoT14I	CCWWGG	3 cut(s)	653, 908, 1237
ErhI	CCWWGG	3 cut(s)	653, 908, 1237
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	9 cut(s)	98, 182, 596, 618, 912, 982, 1043, 1049, 1241
FaqI	GGGAC	2 cut(s)	575, 1357
FatI	CATG	9 cut(s)	94, 178, 592, 614, 908, 978, 1039, 1045, 1237
FauI	CCCGC	1 cut(s)	661
FauNDI	CATATG	1 cut(s)	838
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	642, 946, 1196, 1199
Fsp4HI	GCNGC	4 cut(s)	642, 946, 1196, 1199
FspBI	CTAG	3 cut(s)	20, 1166, 1227
GlaI	GCGC	1 cut(s)	1131
GluI	GCNGC	4 cut(s)	642, 946, 1196, 1199
GsaI	CCCAGC	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	1133
HaeIII	GGCC	2 cut(s)	465, 1236
HapII	CCGG	2 cut(s)	225, 1035
HhaI	GCGC	1 cut(s)	1132
Hin1II	CATG	9 cut(s)	98, 182, 596, 618, 912, 982, 1043, 1049, 1241
Hin6I	GCGC	1 cut(s)	1130
HinP1I	GCGC	1 cut(s)	1130
HindIII	AAGCTT	2 cut(s)	41, 756
HinfI	GANTC	8 cut(s)	28, 211, 487, 494, 624, 1243, 1291, 1319
HpaII	CCGG	2 cut(s)	225, 1035
HphI	GGTGA	3 cut(s)	220, 716, 983
Hpy166II	GTNNAC	4 cut(s)	244, 713, 892, 1138
Hpy188I	TCNGA	5 cut(s)	125, 270, 486, 763, 1063
Hpy8I	GTNNAC	4 cut(s)	244, 713, 892, 1138
HpyAV	CCTTC	4 cut(s)	181, 962, 1163, 1282
HpyCH4III	ACNGT	5 cut(s)	11, 113, 238, 341, 547
HpyCH4IV	ACGT	2 cut(s)	117, 409
HpyCH4V	TGCA	6 cut(s)	575, 928, 955, 1082, 1107, 1307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1313
HpyF3I	CTNAG	2 cut(s)	855, 900
HpySE526I	ACGT	2 cut(s)	117, 409
Hsp92II	CATG	9 cut(s)	98, 182, 596, 618, 912, 982, 1043, 1049, 1241
HspAI	GCGC	1 cut(s)	1130
Kzo9I	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	3 cut(s)	628, 957, 1210
LweI	GCATC	2 cut(s)	568, 964
MaeI	CTAG	3 cut(s)	20, 1166, 1227
MaeII	ACGT	2 cut(s)	117, 409
MaeIII	GTNAC	7 cut(s)	68, 113, 208, 326, 1118, 1177, 1329
MalI	GATC	6 cut(s)	59, 127, 177, 197, 1060, 1253
MboI	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
MboII	GAAGA	2 cut(s)	615, 1267
MfeI	CAATTG	1 cut(s)	1146
MlsI	TGGCCA	1 cut(s)	1236
MluCI	AATT	5 cut(s)	142, 313, 352, 681, 1146
MluNI	TGGCCA	1 cut(s)	1236
MlyI	GAGTC	2 cut(s)	205, 481
Mox20I	TGGCCA	1 cut(s)	1236
MscI	TGGCCA	1 cut(s)	1236
MseI	TTAA	2 cut(s)	348, 524
MslI	CAYNNNNRTG	2 cut(s)	1044, 1050
Msp20I	TGGCCA	1 cut(s)	1236
MspI	CCGG	2 cut(s)	225, 1035
MspR9I	CCNGG	2 cut(s)	135, 225
MunI	CAATTG	1 cut(s)	1146
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	1313
NciI	CCSGG	1 cut(s)	225
NcoI	CCATGG	2 cut(s)	908, 1237
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
NheI	GCTAGC	1 cut(s)	1226
NlaIII	CATG	9 cut(s)	98, 182, 596, 618, 912, 982, 1043, 1049, 1241
NlaIV	GGNNCC	1 cut(s)	563
NmeAIII	GCCGAG	2 cut(s)	812, 1190
NmuCI	GTSAC	3 cut(s)	113, 208, 1118
PagI	TCATGA	2 cut(s)	178, 592
PfeI	GAWTC	6 cut(s)	28, 494, 624, 1243, 1291, 1319
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	643, 947, 1197, 1200
PleI	GAGTC	2 cut(s)	205, 481
PpsI	GAGTC	2 cut(s)	205, 481
PpuMI	RGGWCCY	1 cut(s)	562
PsiI	TTATAA	2 cut(s)	1014, 1387
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	1177
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	3 cut(s)	91, 440, 562
PspPPI	RGGWCCY	1 cut(s)	562
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	7 cut(s)	13, 235, 245, 308, 343, 769, 785
RsaNI	GTAC	7 cut(s)	12, 234, 244, 307, 342, 768, 784
RseI	CAYNNNNRTG	2 cut(s)	1044, 1050
SaqAI	TTAA	2 cut(s)	348, 524
SatI	GCNGC	4 cut(s)	642, 946, 1196, 1199
Sau3AI	GATC	6 cut(s)	57, 125, 175, 195, 1058, 1251
Sau96I	GGNCC	3 cut(s)	91, 440, 562
ScaI	AGTACT	2 cut(s)	235, 308
SchI	GAGTC	2 cut(s)	205, 481
ScrFI	CCNGG	2 cut(s)	135, 225
SfaNI	GCATC	2 cut(s)	568, 964
SinI	GGWCC	3 cut(s)	91, 440, 562
SmiMI	CAYNNNNRTG	2 cut(s)	1044, 1050
SmlI	CTYRAG	2 cut(s)	73, 1247
SmoI	CTYRAG	2 cut(s)	73, 1247
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	5 cut(s)	142, 313, 352, 681, 1146
SsiI	CCGC	2 cut(s)	668, 1196
SspMI	CTAG	3 cut(s)	20, 1166, 1227
StyD4I	CCNGG	2 cut(s)	133, 223
StyI	CCWWGG	3 cut(s)	653, 908, 1237
TaaI	ACNGT	5 cut(s)	11, 113, 238, 341, 547
TaiI	ACGT	2 cut(s)	120, 412
TaqI	TCGA	1 cut(s)	502
TasI	AATT	5 cut(s)	142, 313, 352, 681, 1146
TatI	WGTACW	4 cut(s)	233, 243, 306, 767
TauI	GCSGC	1 cut(s)	1198
TfiI	GAWTC	6 cut(s)	28, 494, 624, 1243, 1291, 1319
Tru1I	TTAA	2 cut(s)	348, 524
Tru9I	TTAA	2 cut(s)	348, 524
TscAI	CASTG	2 cut(s)	118, 344
TseFI	GTSAC	3 cut(s)	113, 208, 1118
TseI	GCWGC	3 cut(s)	641, 945, 1198
Tsp45I	GTSAC	3 cut(s)	113, 208, 1118
TspDTI	ATGAA	7 cut(s)	149, 234, 323, 581, 616, 1034, 1068
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	2 cut(s)	118, 344
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	3 cut(s)	91, 440, 562
XapI	RAATTY	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	1165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	712
XspI	CTAG	3 cut(s)	20, 1166, 1227
ZrmI	AGTACT	2 cut(s)	235, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.