Rorug06G0310900

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009780
Physical Location & Seq
Reverse (-)
46212517 .. 46213789
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0310900.1

Sequence Viewer

Length: 663 bp
ATGGATTGTGTTAAGTTGAGGTTTGGAAGAGAAGAAGATTTAAGCGATATTTCTCCATGGACTGCAAAGAACTTTACATGTAGCTTTTGCAAGAGAGAATTCAGGTCTGCTCAAGCTCTTGGGGGTCATATGAATGTCCATAGGAGAGATAGAGCTAGGCTGCGACTCCTACCACCTAACTCGATCCTTTCTTCTTCTGAATATTCTCCTTACCCTACTCCTAACCCTAACCCTAACCCTAACCCTAAGTCTTACTTCTCTCCGTCGCCATCATCATCATCTCTTTCAGGAGCTAATAAGTACTTACCGCACTTGCTCTCTCCTCGGAGCACTTATGTGTCCACACCTTCCTCAGGTACTTCAGATCATGAAAACAAGAAACTGATGATATTCGACAGCGGCTCTCATCAACATCATGTTCCTGCTTTCCTTAATCCTAAGAAAAGCGTCAAGGGAGGCAGTGGTCTTGATTATGAGTTTGGAGATTTACTCAATGGTTTTGCTGGGAATGCACAAAAACATCATCTTAATGATGATTTCAAGGTTGTGAGGAAAGATGAGAAGCATATCAACATGATTAGGGTGGATTTGGACATGGGGTTGCTGATTAAAGATCCAAATAAGGAGGAACTGGATTTGGAACTTCGACTCGGGCATCTCTAG

Protein Analysis

220

Amino Acids

24.7

Weight (kDa)

8.91

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 25 - 49 1e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009780)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52940 AT2G27190
fragaria_vesca FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica MD15G1020000.v1.1
prunus_persica Prupe.1G372000_v2.0.a1
pyrus_communis pycom15g01660
rosa_chinensis RchiOBHm_Chr6g0301991
rosa_laevigata RLG00000011210
rosa_multiflora Rmu_sc0006892.1_g000004
rosa_roxburghii Rroxscaffold_7G00166210
rosa_rugosa Rorug06G0310900
rosa_samantha Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana Rw6G036680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 308, 399
AclWI GGATC 2 cut(s) 178, 608
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 302, 358
AfiI CCNNNNNNNGG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 541
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 4 cut(s) 84, 116, 155, 293
AluI AGCT 4 cut(s) 84, 116, 155, 293
Alw21I GWGCWC 1 cut(s) 332
AlwI GGATC 2 cut(s) 178, 608
Ama87I CYCGRG 1 cut(s) 650
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 650
AxyI CCTNAGG 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 277
BfaI CTAG 2 cut(s) 156, 661
BisI GCNGC 2 cut(s) 161, 400
BlsI GCNGC 2 cut(s) 162, 401
BmcAI AGTACT 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 650
BplI GAGNNNNNCTC 2 cut(s) 474, 506
BpuEI CTTGAG 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 56, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 636
Bse21I CCTNAGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 56, 323
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 650
BslI CCNNNNNNNGG 1 cut(s) 353
BsmI GAATGC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 183, 364, 613
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 308, 399
BspCNI CTCAG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 367
BspPI GGATC 2 cut(s) 178, 608
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 2 cut(s) 56, 323
BssMI GATC 3 cut(s) 183, 364, 613
BssT1I CCWWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 246, 352, 438
BstDSI CCRYGG 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 351
BstKTI GATC 3 cut(s) 186, 367, 616
BstMBI GATC 3 cut(s) 183, 364, 613
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
Bsu36I CCTNAGG 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
CciI TCATGA 1 cut(s) 367
CseI GACGC 1 cut(s) 436
Csp6I GTAC 2 cut(s) 301, 357
CviAII CATG 6 cut(s) 57, 78, 368, 416, 574, 595
CviJI RGCY 6 cut(s) 84, 116, 155, 160, 293, 402
CviKI_1 RGCY 6 cut(s) 84, 116, 155, 160, 293, 402
CviQI GTAC 2 cut(s) 301, 357
DdeI CTNAG 3 cut(s) 246, 352, 438
DpnI GATC 3 cut(s) 185, 366, 615
DpnII GATC 3 cut(s) 183, 364, 613
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 345
Eco81I CCTNAGG 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 6 cut(s) 60, 81, 371, 419, 577, 598
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 6 cut(s) 56, 77, 367, 415, 573, 594
FauNDI CATATG 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 161, 400
Fsp4HI GCNGC 2 cut(s) 161, 400
FspBI CTAG 2 cut(s) 156, 661
GluI GCNGC 2 cut(s) 161, 400
GsaI CCCAGC 1 cut(s) 507
HgaI GACGC 1 cut(s) 436
Hin1II CATG 6 cut(s) 60, 81, 371, 419, 577, 598
HinfI GANTC 2 cut(s) 165, 648
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 3 cut(s) 199, 327, 364
Hpy188III TCNNGA 3 cut(s) 288, 368, 467
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 65, 90, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 3 cut(s) 246, 352, 438
Hsp92II CATG 6 cut(s) 60, 81, 371, 419, 577, 598
Kzo9I GATC 3 cut(s) 183, 364, 613
LmnI GCTCC 2 cut(s) 290, 327
LpnPI CCDG 6 cut(s) 88, 273, 339, 435, 489, 617
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 2 cut(s) 156, 661
MalI GATC 3 cut(s) 185, 366, 615
MboI GATC 3 cut(s) 183, 364, 613
MboII GAAGA 5 cut(s) 39, 44, 47, 183, 186
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 1 cut(s) 98
MlyI GAGTC 2 cut(s) 159, 642
MnlI CCTC 6 cut(s) 12, 333, 361, 449, 543, 619
MseI TTAA 5 cut(s) 12, 41, 432, 528, 609
MslI CAYNNNNRTG 3 cut(s) 132, 335, 528
MspA1I CMGCKG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 514
MwoI GCNNNNNNNGC 1 cut(s) 509
NcoI CCATGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 129
NdeII GATC 3 cut(s) 183, 364, 613
NlaIII CATG 6 cut(s) 60, 81, 371, 419, 577, 598
NspI RCATGY 1 cut(s) 81
OliI CACNNNNGTG 1 cut(s) 335
PagI TCATGA 1 cut(s) 367
PciI ACATGT 1 cut(s) 77
PctI GAATGC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 162, 401
PleI GAGTC 2 cut(s) 159, 642
PpsI GAGTC 2 cut(s) 159, 642
PscI ACATGT 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 613
RsaI GTAC 2 cut(s) 302, 358
RsaNI GTAC 2 cut(s) 301, 357
RseI CAYNNNNRTG 3 cut(s) 132, 335, 528
SaqAI TTAA 5 cut(s) 12, 41, 432, 528, 609
SatI GCNGC 2 cut(s) 161, 400
Sau3AI GATC 3 cut(s) 183, 364, 613
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 2 cut(s) 159, 642
SduI GDGCHC 1 cut(s) 332
SmiMI CAYNNNNRTG 3 cut(s) 132, 335, 528
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 308, 399
SspI AATATT 1 cut(s) 203
SspMI CTAG 2 cut(s) 156, 661
StyI CCWWGG 1 cut(s) 56
TaqI TCGA 3 cut(s) 182, 393, 646
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 402
Tru1I TTAA 5 cut(s) 12, 41, 432, 528, 609
Tru9I TTAA 5 cut(s) 12, 41, 432, 528, 609
TscAI CASTG 1 cut(s) 466
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 146, 384
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 466
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 81
XspI CTAG 2 cut(s) 156, 661
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.