Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

61610914 .. 61614342

Gene Structure 3429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG423400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAGGAAGAAGACAGAGATGGACTACTCTGCCATACTAGTCCTGATTCTTTCTGTCAAGCTTTGTGAAAGTGGGATCACAAGTAGTTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTGTTCCGATCCCCTCCTGGGTATAATTCCCCTCAACAGGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAAATAAACCCGGTTCAAGTACTGTGGTGTACTGGGCAGACAATAGTGGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTAATTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAGTTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATTACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTAAACCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCCTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCTATCAACCTTGGATCTGGACTGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGGTGAAAGTATACCATTCAAACCATATACAAATCGCTTTTTGGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGTTGCCTAAAGTGAACAGAACTGAGACACCATGGCTTATTGTTCTTGTGCATTGTCCAATGTATAGCAGCTATGTGCATCATTATATGGAAGGTGAAACCATGAGGGTTATGTATGAGCAATGGTTCGTGGATTATAAAGTAGATGTTGTCTTTGCCGGTCATGTTCATGCCTATGAACGATCTGTAAGTAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

364

Amino Acids

42.16

Weight (kDa)

6.89

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	56 - 148	2.5e-20	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	159 - 357	1.2e-26	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1032
AccI	GTMKAC	2 cut(s)	730, 1087
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	4 cut(s)	83, 138, 201, 683
AcuI	CTGAAG	2 cut(s)	762, 804
AfaI	GTAC	6 cut(s)	253, 263, 326, 361, 787, 803
AfiI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	249, 331, 516, 739, 890
AhlI	ACTAGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	61, 776, 818, 966
AluI	AGCT	4 cut(s)	61, 776, 818, 966
Alw26I	GTCTC	2 cut(s)	418, 914
AlwI	GGATC	4 cut(s)	83, 138, 201, 683
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	2 cut(s)	659, 963
AspS9I	GGNCC	3 cut(s)	109, 458, 580
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	238, 734, 1001
AvaII	GGWCC	3 cut(s)	109, 458, 580
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BauI	CACGAG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	646, 975
BccI	CCATC	3 cut(s)	13, 618, 815
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	418, 914
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	660, 964
BlsI	GCNGC	2 cut(s)	661, 965
BmcAI	AGTACT	2 cut(s)	253, 326
Bme1390I	CCNGG	2 cut(s)	153, 243
Bme18I	GGWCC	3 cut(s)	109, 458, 580
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	109, 458, 580
BmiI	GGNNCC	2 cut(s)	581, 765
BmrFI	CCNGG	2 cut(s)	153, 243
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	586, 982
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	2 cut(s)	516, 600
BsaJI	CCNNGG	3 cut(s)	152, 671, 926
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	1022
Bse8I	GATNNNNATC	2 cut(s)	516, 600
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	152, 671, 926
BseJI	GATNNNNATC	2 cut(s)	516, 600
BseLI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	2 cut(s)	887, 909
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	702, 783, 861
BseXI	GCAGC	2 cut(s)	646, 975
BseYI	CCCAGC	1 cut(s)	547
BshFI	GGCC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	243, 1053
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
BsmAI	GTCTC	2 cut(s)	418, 914
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	75, 143, 193, 675, 1076
Bsp19I	CCATGG	1 cut(s)	926
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	886, 910
BspHI	TCATGA	2 cut(s)	196, 610
BspLI	GGNNCC	2 cut(s)	581, 765
BspPI	GGATC	4 cut(s)	83, 138, 201, 683
BsrDI	GCAATG	1 cut(s)	1022
BsrFI	RCCGGY	1 cut(s)	1052
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	3 cut(s)	152, 671, 926
BssMI	GATC	5 cut(s)	75, 143, 193, 675, 1076
BssNAI	GTATAC	1 cut(s)	731
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	671, 926
Bst1107I	GTATAC	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	4 cut(s)	131, 256, 359, 565
BstDEI	CTNAG	2 cut(s)	873, 918
BstDSI	CCRYGG	1 cut(s)	926
BstKTI	GATC	5 cut(s)	78, 146, 196, 678, 1079
BstMAI	GTCTC	2 cut(s)	418, 914
BstMBI	GATC	5 cut(s)	75, 143, 193, 675, 1076
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	151, 241
BstV1I	GCAGC	2 cut(s)	646, 975
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BstZ17I	GTATAC	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	926
BtrI	CACGTC	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 355
CciI	TCATGA	2 cut(s)	196, 610
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	3 cut(s)	109, 458, 580
Csp6I	GTAC	6 cut(s)	252, 262, 325, 360, 786, 802
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	8 cut(s)	113, 197, 611, 633, 927, 997, 1058, 1064
CviJI	RGCY	7 cut(s)	61, 483, 776, 818, 886, 931, 966
CviKI_1	RGCY	7 cut(s)	61, 483, 776, 818, 886, 931, 966
CviQI	GTAC	6 cut(s)	252, 262, 325, 360, 786, 802
DdeI	CTNAG	2 cut(s)	873, 918
DpnI	GATC	5 cut(s)	77, 145, 195, 677, 1078
DpnII	GATC	5 cut(s)	75, 143, 193, 675, 1076
Eco130I	CCWWGG	2 cut(s)	671, 926
Eco47I	GGWCC	3 cut(s)	109, 458, 580
Eco57I	CTGAAG	2 cut(s)	762, 804
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	671, 926
ErhI	CCWWGG	2 cut(s)	671, 926
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	8 cut(s)	112, 196, 610, 632, 926, 996, 1057, 1063
FauI	CCCGC	1 cut(s)	679
FauNDI	CATATG	1 cut(s)	856
FblI	GTMKAC	2 cut(s)	730, 1087
Fnu4HI	GCNGC	2 cut(s)	660, 964
Fsp4HI	GCNGC	2 cut(s)	660, 964
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	2 cut(s)	660, 964
GsaI	CCCAGC	1 cut(s)	551
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	2 cut(s)	243, 1053
Hin1II	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
HindIII	AAGCTT	2 cut(s)	59, 774
HinfI	GANTC	5 cut(s)	46, 229, 505, 512, 642
HpaII	CCGG	2 cut(s)	243, 1053
HphI	GGTGA	3 cut(s)	238, 734, 1001
Hpy166II	GTNNAC	4 cut(s)	262, 731, 910, 1088
Hpy188I	TCNGA	4 cut(s)	143, 288, 504, 781
Hpy188III	TCNNGA	8 cut(s)	43, 197, 461, 509, 611, 679, 695, 811
Hpy8I	GTNNAC	4 cut(s)	262, 731, 910, 1088
HpyAV	CCTTC	2 cut(s)	199, 980
HpyCH4III	ACNGT	4 cut(s)	131, 256, 359, 565
HpyCH4IV	ACGT	2 cut(s)	135, 427
HpyCH4V	TGCA	3 cut(s)	593, 946, 973
HpyF3I	CTNAG	2 cut(s)	873, 918
HpySE526I	ACGT	2 cut(s)	135, 427
Hsp92II	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
Kzo9I	GATC	5 cut(s)	75, 143, 193, 675, 1076
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	2 cut(s)	646, 975
LweI	GCATC	2 cut(s)	586, 982
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	135, 427
MaeIII	GTNAC	4 cut(s)	86, 131, 226, 344
MalI	GATC	5 cut(s)	77, 145, 195, 677, 1078
MboI	GATC	5 cut(s)	75, 143, 193, 675, 1076
MboII	GAAGA	3 cut(s)	19, 22, 633
MflI	RGATCY	1 cut(s)	675
MluCI	AATT	5 cut(s)	160, 316, 331, 370, 699
MlyI	GAGTC	2 cut(s)	223, 499
MseI	TTAA	2 cut(s)	315, 542
MslI	CAYNNNNRTG	2 cut(s)	1062, 1068
MspI	CCGG	2 cut(s)	243, 1053
MspR9I	CCNGG	2 cut(s)	153, 243
MvaI	CCWGG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	243
NcoI	CCATGG	1 cut(s)	926
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	5 cut(s)	75, 143, 193, 675, 1076
NlaIII	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
NlaIV	GGNNCC	2 cut(s)	581, 765
NmeAIII	GCCGAG	1 cut(s)	830
NmuCI	GTSAC	2 cut(s)	131, 226
PagI	TCATGA	2 cut(s)	196, 610
PfeI	GAWTC	3 cut(s)	46, 512, 642
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	661, 965
PleI	GAGTC	2 cut(s)	223, 499
PpsI	GAGTC	2 cut(s)	223, 499
PpuMI	RGGWCCY	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	1032
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	581, 765
PspPI	GGNCC	3 cut(s)	109, 458, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	675
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	6 cut(s)	253, 263, 326, 361, 787, 803
RsaNI	GTAC	6 cut(s)	252, 262, 325, 360, 786, 802
RseI	CAYNNNNRTG	2 cut(s)	1062, 1068
SaqAI	TTAA	2 cut(s)	315, 542
SatI	GCNGC	2 cut(s)	660, 964
Sau3AI	GATC	5 cut(s)	75, 143, 193, 675, 1076
Sau96I	GGNCC	3 cut(s)	109, 458, 580
ScaI	AGTACT	2 cut(s)	253, 326
SchI	GAGTC	2 cut(s)	223, 499
ScrFI	CCNGG	2 cut(s)	153, 243
SfaNI	GCATC	2 cut(s)	586, 982
SinI	GGWCC	3 cut(s)	109, 458, 580
SmiMI	CAYNNNNRTG	2 cut(s)	1062, 1068
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	5 cut(s)	160, 316, 331, 370, 699
SsiI	CCGC	1 cut(s)	686
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	151, 241
StyI	CCWWGG	2 cut(s)	671, 926
TaaI	ACNGT	4 cut(s)	131, 256, 359, 565
TaiI	ACGT	2 cut(s)	138, 430
TaqI	TCGA	1 cut(s)	520
TasI	AATT	5 cut(s)	160, 316, 331, 370, 699
TatI	WGTACW	4 cut(s)	251, 261, 324, 785
TfiI	GAWTC	3 cut(s)	46, 512, 642
Tru1I	TTAA	2 cut(s)	315, 542
Tru9I	TTAA	2 cut(s)	315, 542
TscAI	CASTG	2 cut(s)	136, 362
TseFI	GTSAC	2 cut(s)	131, 226
TseI	GCWGC	2 cut(s)	659, 963
Tsp45I	GTSAC	2 cut(s)	131, 226
TspDTI	ATGAA	6 cut(s)	167, 341, 599, 634, 1052, 1086
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	136, 362
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	109, 458, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	730, 1087
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	2 cut(s)	253, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.