Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

61597464 .. 61600227

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG436500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAGGAAGAAGACAGAGATGGACTACTGTACCATACTAGTCCTGATTCTTTCTGTCAAGCTTTGTGAAAGTGGTATCACAAGTAGTTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTGTTCCGATCCCCTCCTGGGTATAATTCCCCTCAACAGGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAAATGAACCTGGTTCAAGTACTGTGGTGTACTGGGCAGACAATAGTGGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTACTTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAGTTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATAACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTCAACCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCTTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCTATCAACCTTGGATTTGGACTGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGGTGAAAGTATACCATTCAAACCATATACAAATCGCTTTTTTGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGTTGCCTAAAGTGAACAGAACTGAGACACCATGGCTTATTGTTCTTGTGCATTGTCCAATGTATAGCAGCTATGTGCATCATTATATGGAAGGTGAAACCATGAGGGTTATGTATGAGCAATGGTTCGTGGATTATAAAGTAGATGTTGTCTTTGCCGGTCATGTTCATGCCTATGAACGATCTGTAAGTAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

364

Amino Acids

42.26

Weight (kDa)

6.49

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	56 - 148	8.8e-21	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	159 - 357	1.8e-26	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	440, 1032
AccI	GTMKAC	2 cut(s)	730, 1087
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	2 cut(s)	138, 201
AcuI	CTGAAG	2 cut(s)	762, 804
AfaI	GTAC	7 cut(s)	31, 253, 263, 326, 361, 787, 803
AfiI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	6 cut(s)	249, 331, 516, 544, 739, 890
AhlI	ACTAGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	151, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	61, 776, 818, 966
AluI	AGCT	4 cut(s)	61, 776, 818, 966
Alw26I	GTCTC	2 cut(s)	418, 914
AlwI	GGATC	2 cut(s)	138, 201
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	2 cut(s)	659, 963
AspS9I	GGNCC	3 cut(s)	109, 458, 580
AsuHPI	GGTGA	3 cut(s)	238, 734, 1001
AvaII	GGWCC	3 cut(s)	109, 458, 580
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BauI	CACGAG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	646, 975
BccI	CCATC	3 cut(s)	13, 618, 815
BciT130I	CCWGG	2 cut(s)	153, 243
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	418, 914
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	660, 964
BlsI	GCNGC	2 cut(s)	661, 965
BmcAI	AGTACT	2 cut(s)	253, 326
Bme1390I	CCNGG	2 cut(s)	153, 243
Bme18I	GGWCC	3 cut(s)	109, 458, 580
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	109, 458, 580
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	2 cut(s)	153, 243
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	586, 982
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	112
BsaBI	GATNNNNATC	2 cut(s)	516, 600
BsaJI	CCNNGG	3 cut(s)	152, 671, 926
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	1022
Bse8I	GATNNNNATC	2 cut(s)	516, 600
BseBI	CCWGG	2 cut(s)	153, 243
BseDI	CCNNGG	3 cut(s)	152, 671, 926
BseJI	GATNNNNATC	2 cut(s)	516, 600
BseLI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	2 cut(s)	887, 909
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	702, 783, 861
BseXI	GCAGC	2 cut(s)	646, 975
BseYI	CCCAGC	1 cut(s)	547
BshFI	GGCC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	1053
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
BsmAI	GTCTC	2 cut(s)	418, 914
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	483
Bsp143I	GATC	3 cut(s)	143, 193, 1076
Bsp19I	CCATGG	1 cut(s)	926
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	886, 910
BspHI	TCATGA	2 cut(s)	196, 610
BspLI	GGNNCC	1 cut(s)	581
BspPI	GGATC	2 cut(s)	138, 201
BsrDI	GCAATG	1 cut(s)	1022
BsrFI	RCCGGY	1 cut(s)	1052
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	3 cut(s)	152, 671, 926
BssMI	GATC	3 cut(s)	143, 193, 1076
BssNAI	GTATAC	1 cut(s)	731
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	671, 926
Bst1107I	GTATAC	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	2 cut(s)	153, 243
Bst4CI	ACNGT	5 cut(s)	29, 131, 256, 359, 565
BstDEI	CTNAG	2 cut(s)	873, 918
BstDSI	CCRYGG	1 cut(s)	926
BstKTI	GATC	3 cut(s)	146, 196, 1079
BstMAI	GTCTC	2 cut(s)	418, 914
BstMBI	GATC	3 cut(s)	143, 193, 1076
BstNI	CCWGG	2 cut(s)	153, 243
BstSCI	CCNGG	2 cut(s)	151, 241
BstV1I	GCAGC	2 cut(s)	646, 975
BstV2I	GAAGAC	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	926
BtrI	CACGTC	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 355
CciI	TCATGA	2 cut(s)	196, 610
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	3 cut(s)	109, 458, 580
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	7 cut(s)	30, 252, 262, 325, 360, 786, 802
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	8 cut(s)	113, 197, 611, 633, 927, 997, 1058, 1064
CviJI	RGCY	7 cut(s)	61, 483, 776, 818, 886, 931, 966
CviKI_1	RGCY	7 cut(s)	61, 483, 776, 818, 886, 931, 966
CviQI	GTAC	7 cut(s)	30, 252, 262, 325, 360, 786, 802
DdeI	CTNAG	2 cut(s)	873, 918
DpnI	GATC	3 cut(s)	145, 195, 1078
DpnII	GATC	3 cut(s)	143, 193, 1076
Eco130I	CCWWGG	2 cut(s)	671, 926
Eco47I	GGWCC	3 cut(s)	109, 458, 580
Eco57I	CTGAAG	2 cut(s)	762, 804
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	151, 241
EcoT14I	CCWWGG	2 cut(s)	671, 926
ErhI	CCWWGG	2 cut(s)	671, 926
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	8 cut(s)	112, 196, 610, 632, 926, 996, 1057, 1063
FauI	CCCGC	1 cut(s)	679
FauNDI	CATATG	1 cut(s)	856
FblI	GTMKAC	2 cut(s)	730, 1087
Fnu4HI	GCNGC	2 cut(s)	660, 964
Fsp4HI	GCNGC	2 cut(s)	660, 964
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	2 cut(s)	660, 964
GsaI	CCCAGC	1 cut(s)	551
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	1053
Hin1II	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
HindIII	AAGCTT	2 cut(s)	59, 774
HinfI	GANTC	5 cut(s)	46, 229, 505, 512, 642
HpaII	CCGG	1 cut(s)	1053
HphI	GGTGA	3 cut(s)	238, 734, 1001
Hpy166II	GTNNAC	4 cut(s)	262, 731, 910, 1088
Hpy188I	TCNGA	4 cut(s)	143, 288, 504, 781
Hpy188III	TCNNGA	7 cut(s)	43, 197, 461, 509, 611, 695, 811
Hpy8I	GTNNAC	4 cut(s)	262, 731, 910, 1088
HpyAV	CCTTC	2 cut(s)	199, 980
HpyCH4III	ACNGT	5 cut(s)	29, 131, 256, 359, 565
HpyCH4IV	ACGT	2 cut(s)	135, 427
HpyCH4V	TGCA	3 cut(s)	593, 946, 973
HpyF3I	CTNAG	2 cut(s)	873, 918
HpySE526I	ACGT	2 cut(s)	135, 427
Hsp92II	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
Kzo9I	GATC	3 cut(s)	143, 193, 1076
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	2 cut(s)	646, 975
LweI	GCATC	2 cut(s)	586, 982
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	135, 427
MaeIII	GTNAC	4 cut(s)	86, 131, 226, 344
MalI	GATC	3 cut(s)	145, 195, 1078
MboI	GATC	3 cut(s)	143, 193, 1076
MboII	GAAGA	3 cut(s)	19, 22, 633
MluCI	AATT	4 cut(s)	160, 331, 370, 699
MlyI	GAGTC	2 cut(s)	223, 499
MslI	CAYNNNNRTG	2 cut(s)	1062, 1068
MspI	CCGG	1 cut(s)	1053
MspR9I	CCNGG	2 cut(s)	153, 243
MvaI	CCWGG	2 cut(s)	153, 243
NcoI	CCATGG	1 cut(s)	926
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	3 cut(s)	143, 193, 1076
NlaIII	CATG	8 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067
NlaIV	GGNNCC	1 cut(s)	581
NmeAIII	GCCGAG	1 cut(s)	830
NmuCI	GTSAC	2 cut(s)	131, 226
PagI	TCATGA	2 cut(s)	196, 610
PfeI	GAWTC	3 cut(s)	46, 512, 642
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	661, 965
PleI	GAGTC	2 cut(s)	223, 499
PpsI	GAGTC	2 cut(s)	223, 499
PpuMI	RGGWCCY	1 cut(s)	580
PsiI	TTATAA	2 cut(s)	440, 1032
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	151, 241
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	2 cut(s)	151, 241
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	3 cut(s)	109, 458, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	7 cut(s)	31, 253, 263, 326, 361, 787, 803
RsaNI	GTAC	7 cut(s)	30, 252, 262, 325, 360, 786, 802
RseI	CAYNNNNRTG	2 cut(s)	1062, 1068
SatI	GCNGC	2 cut(s)	660, 964
Sau3AI	GATC	3 cut(s)	143, 193, 1076
Sau96I	GGNCC	3 cut(s)	109, 458, 580
ScaI	AGTACT	2 cut(s)	253, 326
SchI	GAGTC	2 cut(s)	223, 499
ScrFI	CCNGG	2 cut(s)	153, 243
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	586, 982
SinI	GGWCC	3 cut(s)	109, 458, 580
SmiMI	CAYNNNNRTG	2 cut(s)	1062, 1068
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	4 cut(s)	160, 331, 370, 699
SsiI	CCGC	1 cut(s)	686
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	151, 241
StyI	CCWWGG	2 cut(s)	671, 926
TaaI	ACNGT	5 cut(s)	29, 131, 256, 359, 565
TaiI	ACGT	2 cut(s)	138, 430
TaqI	TCGA	1 cut(s)	520
TasI	AATT	4 cut(s)	160, 331, 370, 699
TatI	WGTACW	4 cut(s)	251, 261, 324, 785
TfiI	GAWTC	3 cut(s)	46, 512, 642
TscAI	CASTG	2 cut(s)	136, 362
TseFI	GTSAC	2 cut(s)	131, 226
TseI	GCWGC	2 cut(s)	659, 963
Tsp45I	GTSAC	2 cut(s)	131, 226
TspDTI	ATGAA	7 cut(s)	167, 252, 341, 599, 634, 1052, 1086
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	136, 362
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	109, 458, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	730, 1087
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	2 cut(s)	253, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.