Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

61112956 .. 61115998

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAGGAAGAAGACAGAGATGGACTACTCTGCCATACTAGTCCTGATTCTTTCTGTCAAGCTTTGTGAAAGTGGGATCACAAGTAGTTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTGTTCCGATCCCCTCCTGGGTATAATTCCCCTCAACAGGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAAATAAACCCGGTTCAAGTACTGTGGTGTACTGGGCAGACAATAGTGGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTACTTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAGTTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATTACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTAAACCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCCTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCTATCAACCTTGGATTTGGACTGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGGTGAAACTATACCATTCAAACCATATACAAATCGCTTTTTTGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGTTGCCTAAAGTGAACAGAACTGAGACACCATGGCTTATTGTTCTTGTGCATTGTCCAATGTATAGCAGCTATGTGCATCATTATATGGAAGGTGAAACCATGAGGGTTATGTATGAGCAATGGTTCGTGGATTATAAAGTAGATGTTGTCTTTGCCGGTCATGTTCATGCCTATGAACGATCTGAAAGGATATCAAACATTGCATACAACATAACAAATGGACTTTGCACTCCCATAAGTGACCAATCAGCGCCAGTTTACATAACAATTGGAGATGGAGGAAATCTAGAAGGATTGGTTACCGAAATGACAGAGCCGCAGCCAAGCTACTCGGCATTTCGTGAGGCTAGCTTTGGCCATGGGATTCTTGAGATCAAAAACAGAAGCTATGCCTTTTTCAGTTGGCATAGGAATCAAGATGGTTATGCAGTAGAAGCTGATTCTTTATGGTTACGCAACAGATATTGGAAAACTACTTTGGAAAAGTCATCGTCCCTAACTGCGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

468

Amino Acids

53.84

Weight (kDa)

6.31

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	56 - 148	1.3e-20	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	159 - 357	1.8e-26	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	383 - 442	1.7e-17	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1032, 1405
AciI	CCGC	2 cut(s)	686, 1214
AclWI	GGATC	3 cut(s)	83, 138, 201
AcoI	YGGCCR	1 cut(s)	1252
AcuI	CTGAAG	2 cut(s)	762, 804
AfaI	GTAC	6 cut(s)	253, 263, 326, 361, 787, 803
AfiI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	249, 331, 516, 739, 890
AhlI	ACTAGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 1358, 1390
AluBI	AGCT	8 cut(s)	61, 776, 818, 966, 1224, 1248, 1284, 1334
AluI	AGCT	8 cut(s)	61, 776, 818, 966, 1224, 1248, 1284, 1334
Alw26I	GTCTC	2 cut(s)	418, 914
AlwI	GGATC	3 cut(s)	83, 138, 201
AoxI	GGCC	2 cut(s)	481, 1252
ApeKI	GCWGC	3 cut(s)	659, 963, 1216
AspLEI	GCGC	1 cut(s)	1150
AspS9I	GGNCC	3 cut(s)	109, 458, 580
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	238, 734, 1001
AsuNHI	GCTAGC	1 cut(s)	1244
AvaII	GGWCC	3 cut(s)	109, 458, 580
BalI	TGGCCA	1 cut(s)	1254
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BauI	CACGAG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	646, 975, 1228
BccI	CCATC	5 cut(s)	13, 618, 815, 1166, 1310
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	418, 914
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	38, 1184, 1245
BfoI	RGCGCY	1 cut(s)	1151
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	660, 964, 1214, 1217
BlsI	GCNGC	4 cut(s)	661, 965, 1215, 1218
BmcAI	AGTACT	2 cut(s)	253, 326
Bme1390I	CCNGG	2 cut(s)	153, 243
Bme18I	GGWCC	3 cut(s)	109, 458, 580
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	109, 458, 580
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	2 cut(s)	153, 243
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	586, 982
BmtI	GCTAGC	1 cut(s)	1248
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	112, 1286
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	2 cut(s)	516, 600
BsaJI	CCNNGG	4 cut(s)	152, 671, 926, 1255
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	2 cut(s)	269, 1151
Bse3DI	GCAATG	2 cut(s)	1022, 1095
Bse8I	GATNNNNATC	2 cut(s)	516, 600
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	4 cut(s)	152, 671, 926, 1255
BseJI	GATNNNNATC	2 cut(s)	516, 600
BseLI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
BseMI	GCAATG	2 cut(s)	1022, 1095
BseMII	CTCAG	2 cut(s)	887, 909
BseNI	ACTGG	2 cut(s)	269, 1151
BseRI	GAGGAG	3 cut(s)	702, 783, 861
BseXI	GCAGC	3 cut(s)	646, 975, 1228
BseYI	CCCAGC	1 cut(s)	547
BshFI	GGCC	2 cut(s)	483, 1254
BsiSI	CCGG	2 cut(s)	243, 1053
BslFI	GGGAC	2 cut(s)	593, 1375
BslI	CCNNNNNNNGG	6 cut(s)	153, 172, 455, 490, 554, 719
BsmAI	GTCTC	2 cut(s)	418, 914
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	2 cut(s)	593, 1375
BsnI	GGCC	2 cut(s)	483, 1254
Bsp143I	GATC	5 cut(s)	75, 143, 193, 1076, 1269
Bsp19I	CCATGG	2 cut(s)	926, 1255
BspACI	CCGC	2 cut(s)	686, 1214
BspANI	GGCC	2 cut(s)	483, 1254
BspCNI	CTCAG	2 cut(s)	886, 910
BspHI	TCATGA	2 cut(s)	196, 610
BspLI	GGNNCC	1 cut(s)	581
BspOI	GCTAGC	1 cut(s)	1248
BspPI	GGATC	3 cut(s)	83, 138, 201
BsrDI	GCAATG	2 cut(s)	1022, 1095
BsrFI	RCCGGY	1 cut(s)	1052
BsrI	ACTGG	2 cut(s)	269, 1151
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	4 cut(s)	152, 671, 926, 1255
BssMI	GATC	5 cut(s)	75, 143, 193, 1076, 1269
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	3 cut(s)	671, 926, 1255
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	4 cut(s)	131, 256, 359, 565
BstC8I	GCNNGC	1 cut(s)	1246
BstDEI	CTNAG	2 cut(s)	873, 918
BstDSI	CCRYGG	2 cut(s)	926, 1255
BstEII	GGTNACC	1 cut(s)	1195
BstH2I	RGCGCY	1 cut(s)	1151
BstHHI	GCGC	1 cut(s)	1150
BstKTI	GATC	5 cut(s)	78, 146, 196, 1079, 1272
BstMAI	GTCTC	2 cut(s)	418, 914
BstMBI	GATC	5 cut(s)	75, 143, 193, 1076, 1269
BstMWI	GCNNNNNNNGC	1 cut(s)	1331
BstNI	CCWGG	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	1195
BstSCI	CCNGG	2 cut(s)	151, 241
BstV1I	GCAGC	3 cut(s)	646, 975, 1228
BstV2I	GAAGAC	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	483, 1254
BtgI	CCRYGG	2 cut(s)	926, 1255
BtrI	CACGTC	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 355
Cac8I	GCNNGC	1 cut(s)	1246
CciI	TCATGA	2 cut(s)	196, 610
CfoI	GCGC	1 cut(s)	1150
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	3 cut(s)	109, 458, 580
Csp6I	GTAC	6 cut(s)	252, 262, 325, 360, 786, 802
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	9 cut(s)	113, 197, 611, 633, 927, 997, 1058, 1064, 1256
CviQI	GTAC	6 cut(s)	252, 262, 325, 360, 786, 802
DdeI	CTNAG	2 cut(s)	873, 918
DpnI	GATC	5 cut(s)	77, 145, 195, 1078, 1271
DpnII	GATC	5 cut(s)	75, 143, 193, 1076, 1269
EaeI	YGGCCR	1 cut(s)	1252
Eco130I	CCWWGG	3 cut(s)	671, 926, 1255
Eco32I	GATATC	1 cut(s)	1089
Eco47I	GGWCC	3 cut(s)	109, 458, 580
Eco57I	CTGAAG	2 cut(s)	762, 804
Eco91I	GGTNACC	1 cut(s)	1195
EcoO109I	RGGNCCY	1 cut(s)	580
EcoO65I	GGTNACC	1 cut(s)	1195
EcoRII	CCWGG	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	1089
EcoT14I	CCWWGG	3 cut(s)	671, 926, 1255
ErhI	CCWWGG	3 cut(s)	671, 926, 1255
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	9 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067, 1259
FaqI	GGGAC	2 cut(s)	593, 1375
FatI	CATG	9 cut(s)	112, 196, 610, 632, 926, 996, 1057, 1063, 1255
FauI	CCCGC	1 cut(s)	679
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	4 cut(s)	660, 964, 1214, 1217
Fsp4HI	GCNGC	4 cut(s)	660, 964, 1214, 1217
FspBI	CTAG	3 cut(s)	38, 1184, 1245
GlaI	GCGC	1 cut(s)	1149
GluI	GCNGC	4 cut(s)	660, 964, 1214, 1217
GsaI	CCCAGC	1 cut(s)	551
HaeII	RGCGCY	1 cut(s)	1151
HaeIII	GGCC	2 cut(s)	483, 1254
HapII	CCGG	2 cut(s)	243, 1053
HhaI	GCGC	1 cut(s)	1150
Hin1II	CATG	9 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067, 1259
Hin6I	GCGC	1 cut(s)	1148
HinP1I	GCGC	1 cut(s)	1148
HindIII	AAGCTT	2 cut(s)	59, 774
HinfI	GANTC	8 cut(s)	46, 229, 505, 512, 642, 1261, 1309, 1337
HpaII	CCGG	2 cut(s)	243, 1053
HphI	GGTGA	3 cut(s)	238, 734, 1001
Hpy166II	GTNNAC	3 cut(s)	262, 910, 1156
Hpy188I	TCNGA	5 cut(s)	143, 288, 504, 781, 1081
Hpy8I	GTNNAC	3 cut(s)	262, 910, 1156
HpyAV	CCTTC	3 cut(s)	199, 980, 1181
HpyCH4III	ACNGT	4 cut(s)	131, 256, 359, 565
HpyCH4IV	ACGT	2 cut(s)	135, 427
HpyCH4V	TGCA	6 cut(s)	593, 946, 973, 1100, 1125, 1325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1331
HpyF3I	CTNAG	2 cut(s)	873, 918
HpySE526I	ACGT	2 cut(s)	135, 427
Hsp92II	CATG	9 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067, 1259
HspAI	GCGC	1 cut(s)	1148
Kzo9I	GATC	5 cut(s)	75, 143, 193, 1076, 1269
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	3 cut(s)	646, 975, 1228
LweI	GCATC	2 cut(s)	586, 982
MaeI	CTAG	3 cut(s)	38, 1184, 1245
MaeII	ACGT	2 cut(s)	135, 427
MaeIII	GTNAC	7 cut(s)	86, 131, 226, 344, 1136, 1195, 1347
MalI	GATC	5 cut(s)	77, 145, 195, 1078, 1271
MboI	GATC	5 cut(s)	75, 143, 193, 1076, 1269
MboII	GAAGA	3 cut(s)	19, 22, 633
MfeI	CAATTG	1 cut(s)	1164
MlsI	TGGCCA	1 cut(s)	1254
MluCI	AATT	5 cut(s)	160, 331, 370, 699, 1164
MluNI	TGGCCA	1 cut(s)	1254
MlyI	GAGTC	2 cut(s)	223, 499
Mox20I	TGGCCA	1 cut(s)	1254
MscI	TGGCCA	1 cut(s)	1254
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	2 cut(s)	1062, 1068
Msp20I	TGGCCA	1 cut(s)	1254
MspI	CCGG	2 cut(s)	243, 1053
MspR9I	CCNGG	2 cut(s)	153, 243
MunI	CAATTG	1 cut(s)	1164
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	1331
NciI	CCSGG	1 cut(s)	243
NcoI	CCATGG	2 cut(s)	926, 1255
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	5 cut(s)	75, 143, 193, 1076, 1269
NheI	GCTAGC	1 cut(s)	1244
NlaIII	CATG	9 cut(s)	116, 200, 614, 636, 930, 1000, 1061, 1067, 1259
NlaIV	GGNNCC	1 cut(s)	581
NmeAIII	GCCGAG	2 cut(s)	830, 1208
NmuCI	GTSAC	3 cut(s)	131, 226, 1136
PagI	TCATGA	2 cut(s)	196, 610
PfeI	GAWTC	6 cut(s)	46, 512, 642, 1261, 1309, 1337
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	661, 965, 1215, 1218
PleI	GAGTC	2 cut(s)	223, 499
PpsI	GAGTC	2 cut(s)	223, 499
PpuMI	RGGWCCY	1 cut(s)	580
PsiI	TTATAA	2 cut(s)	1032, 1405
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	1195
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	3 cut(s)	109, 458, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	6 cut(s)	253, 263, 326, 361, 787, 803
RsaNI	GTAC	6 cut(s)	252, 262, 325, 360, 786, 802
RseI	CAYNNNNRTG	2 cut(s)	1062, 1068
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	4 cut(s)	660, 964, 1214, 1217
Sau3AI	GATC	5 cut(s)	75, 143, 193, 1076, 1269
Sau96I	GGNCC	3 cut(s)	109, 458, 580
ScaI	AGTACT	2 cut(s)	253, 326
SchI	GAGTC	2 cut(s)	223, 499
ScrFI	CCNGG	2 cut(s)	153, 243
SfaNI	GCATC	2 cut(s)	586, 982
SinI	GGWCC	3 cut(s)	109, 458, 580
SmiMI	CAYNNNNRTG	2 cut(s)	1062, 1068
SmlI	CTYRAG	2 cut(s)	91, 1265
SmoI	CTYRAG	2 cut(s)	91, 1265
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	5 cut(s)	160, 331, 370, 699, 1164
SsiI	CCGC	2 cut(s)	686, 1214
SspMI	CTAG	3 cut(s)	38, 1184, 1245
StyD4I	CCNGG	2 cut(s)	151, 241
StyI	CCWWGG	3 cut(s)	671, 926, 1255
TaaI	ACNGT	4 cut(s)	131, 256, 359, 565
TaiI	ACGT	2 cut(s)	138, 430
TaqI	TCGA	1 cut(s)	520
TasI	AATT	5 cut(s)	160, 331, 370, 699, 1164
TatI	WGTACW	4 cut(s)	251, 261, 324, 785
TauI	GCSGC	1 cut(s)	1216
TfiI	GAWTC	6 cut(s)	46, 512, 642, 1261, 1309, 1337
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	2 cut(s)	136, 362
TseFI	GTSAC	3 cut(s)	131, 226, 1136
TseI	GCWGC	3 cut(s)	659, 963, 1216
Tsp45I	GTSAC	3 cut(s)	131, 226, 1136
TspDTI	ATGAA	6 cut(s)	167, 341, 599, 634, 1052, 1086
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	136, 362
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	109, 458, 580
XbaI	TCTAGA	1 cut(s)	1183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	38, 1184, 1245
ZrmI	AGTACT	2 cut(s)	253, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.