Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

64988107 .. 64991507

Gene Structure 3401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG430100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGGAAGAAGACAGAGATGGACTACTCTACTGGGCTTGTAGCGGCTACCATACTAGTCCTGATTCTTTCTGTCACGCTTTGTGAAAGTGGGATCACAAGTAGTTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAAATGAACCGGGTTCAAGTACTGTGGTGTACTGGGCAGACAATAGTAGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTACTTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAATTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATAACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTAAACCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCTTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCTATCAACCTTGGATTTGGACTGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGTATGCCTCTCTTTTGTGTGTTACTTTCTTCTACTGCTTACAATTTTTCAAAGGATTGTCAGATTGTGCCTAATATTACATCTAGGTATGCTTCACCAATGCTTGCCTCAGTTAAGACGTACTAAAATAACTGTACTAATGTCAATGCAGGGTGAAAGTATACCATTCAAACCATATACAAATCGCTTTTTTGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

331

Amino Acids

37.9

Weight (kDa)

7.64

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	51 - 141	5.1e-19	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	152 - 235	7.2e-09	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	859
AciI	CCGC	2 cut(s)	44, 665
AclWI	GGATC	2 cut(s)	101, 180
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	2 cut(s)	891, 933
AfaI	GTAC	8 cut(s)	232, 242, 305, 340, 820, 834, 916, 932
AfiI	CCNNNNNNNGG	3 cut(s)	434, 469, 533
AgsI	TTSAA	5 cut(s)	228, 310, 495, 749, 868
AhlI	ACTAGT	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	905, 947
AluI	AGCT	2 cut(s)	905, 947
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	101, 180
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	356
AspS9I	GGNCC	3 cut(s)	127, 437, 559
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	217, 785, 863
AvaII	GGWCC	3 cut(s)	127, 437, 559
BarI	GAAGNNNNNNTAC	2 cut(s)	592, 624
BauI	CACGAG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	3 cut(s)	13, 597, 944
BciVI	GTATCC	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	56, 782
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	2 cut(s)	45, 639
BlsI	GCNGC	2 cut(s)	46, 640
BmcAI	AGTACT	2 cut(s)	232, 305
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	3 cut(s)	127, 437, 559
BmgT120I	GGNCC	3 cut(s)	127, 437, 559
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	2 cut(s)	42, 253
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	2 cut(s)	42, 253
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	2 cut(s)	495, 579
BsaJI	CCNNGG	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 469, 533
Bse1I	ACTGG	2 cut(s)	37, 248
Bse8I	GATNNNNATC	2 cut(s)	495, 579
BseDI	CCNNGG	1 cut(s)	650
BseJI	GATNNNNATC	2 cut(s)	495, 579
BseLI	CCNNNNNNNGG	3 cut(s)	434, 469, 533
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	2 cut(s)	37, 248
BseRI	GAGGAG	2 cut(s)	681, 912
BseXI	GCAGC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	526
BshFI	GGCC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	3 cut(s)	434, 469, 533
BsmAI	GTCTC	1 cut(s)	397
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	93, 172
BspACI	CCGC	2 cut(s)	44, 665
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	1 cut(s)	820
BspHI	TCATGA	2 cut(s)	175, 589
BspLI	GGNNCC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	101, 180
BsrI	ACTGG	2 cut(s)	37, 248
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	2 cut(s)	93, 172
BssNAI	GTATAC	1 cut(s)	860
BssSI	CACGAG	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	650
Bst1107I	GTATAC	1 cut(s)	860
Bst2BI	CACGAG	1 cut(s)	400
Bst4CI	ACNGT	5 cut(s)	149, 235, 338, 544, 832
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	1 cut(s)	807
BstKTI	GATC	2 cut(s)	96, 175
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	93, 172
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	860
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	154, 334
Cac8I	GCNNGC	1 cut(s)	803
CciI	TCATGA	2 cut(s)	175, 589
Cfr13I	GGNCC	3 cut(s)	127, 437, 559
Csp6I	GTAC	8 cut(s)	231, 241, 304, 339, 819, 833, 915, 931
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	4 cut(s)	131, 176, 590, 612
CviJI	RGCY	5 cut(s)	37, 47, 462, 905, 947
CviKI_1	RGCY	5 cut(s)	37, 47, 462, 905, 947
CviQI	GTAC	8 cut(s)	231, 241, 304, 339, 819, 833, 915, 931
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	2 cut(s)	95, 174
DpnII	GATC	2 cut(s)	93, 172
Eco130I	CCWWGG	1 cut(s)	650
Eco47I	GGWCC	3 cut(s)	127, 437, 559
Eco57I	CTGAAG	2 cut(s)	891, 933
EcoO109I	RGGNCCY	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	650
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	4 cut(s)	134, 179, 593, 615
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	4 cut(s)	130, 175, 589, 611
FauI	CCCGC	1 cut(s)	658
FauNDI	CATATG	1 cut(s)	985
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	45, 639
Fsp4HI	GCNGC	2 cut(s)	45, 639
FspBI	CTAG	2 cut(s)	56, 782
GluI	GCNGC	2 cut(s)	45, 639
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	4 cut(s)	134, 179, 593, 615
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	5 cut(s)	64, 208, 484, 491, 621
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	217, 785, 863
Hpy166II	GTNNAC	2 cut(s)	241, 860
Hpy188I	TCNGA	4 cut(s)	267, 483, 761, 910
Hpy188III	TCNNGA	7 cut(s)	61, 176, 440, 488, 590, 674, 940
Hpy8I	GTNNAC	2 cut(s)	241, 860
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	5 cut(s)	149, 235, 338, 544, 832
HpyCH4IV	ACGT	3 cut(s)	153, 406, 817
HpyCH4V	TGCA	2 cut(s)	572, 847
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	3 cut(s)	153, 406, 817
Hsp92II	CATG	4 cut(s)	134, 179, 593, 615
Kzo9I	GATC	2 cut(s)	93, 172
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	9 cut(s)	18, 74, 229, 234, 306, 453, 501, 540, 833
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	56, 782
MaeII	ACGT	3 cut(s)	153, 406, 817
MaeIII	GTNAC	6 cut(s)	73, 104, 149, 205, 323, 719
MalI	GATC	2 cut(s)	95, 174
MboI	GATC	2 cut(s)	93, 172
MboII	GAAGA	4 cut(s)	19, 22, 612, 719
MluCI	AATT	5 cut(s)	310, 349, 356, 678, 741
MlyI	GAGTC	2 cut(s)	202, 478
MseI	TTAA	2 cut(s)	521, 812
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	222
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	985
NdeII	GATC	2 cut(s)	93, 172
NlaIII	CATG	4 cut(s)	134, 179, 593, 615
NlaIV	GGNNCC	1 cut(s)	560
NmeAIII	GCCGAG	1 cut(s)	959
NmuCI	GTSAC	3 cut(s)	73, 149, 205
PagI	TCATGA	2 cut(s)	175, 589
PfeI	GAWTC	3 cut(s)	64, 491, 621
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	46, 640
PleI	GAGTC	2 cut(s)	202, 478
PpsI	GAGTC	2 cut(s)	202, 478
PpuMI	RGGWCCY	1 cut(s)	559
PsiI	TTATAA	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	3 cut(s)	127, 437, 559
PspPPI	RGGWCCY	1 cut(s)	559
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	8 cut(s)	232, 242, 305, 340, 820, 834, 916, 932
RsaNI	GTAC	8 cut(s)	231, 241, 304, 339, 819, 833, 915, 931
SaqAI	TTAA	2 cut(s)	521, 812
SatI	GCNGC	2 cut(s)	45, 639
Sau3AI	GATC	2 cut(s)	93, 172
Sau96I	GGNCC	3 cut(s)	127, 437, 559
ScaI	AGTACT	2 cut(s)	232, 305
SchI	GAGTC	2 cut(s)	202, 478
ScrFI	CCNGG	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	565
SinI	GGWCC	3 cut(s)	127, 437, 559
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	5 cut(s)	310, 349, 356, 678, 741
SsiI	CCGC	2 cut(s)	44, 665
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	2 cut(s)	56, 782
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	5 cut(s)	149, 235, 338, 544, 832
TaiI	ACGT	3 cut(s)	156, 409, 820
TaqI	TCGA	1 cut(s)	499
TasI	AATT	5 cut(s)	310, 349, 356, 678, 741
TatI	WGTACW	5 cut(s)	230, 240, 303, 832, 914
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	64, 491, 621
Tru1I	TTAA	2 cut(s)	521, 812
Tru9I	TTAA	2 cut(s)	521, 812
TscAI	CASTG	2 cut(s)	154, 341
TseFI	GTSAC	3 cut(s)	73, 149, 205
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	3 cut(s)	73, 149, 205
TspDTI	ATGAA	5 cut(s)	146, 231, 320, 578, 613
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	2 cut(s)	154, 341
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	127, 437, 559
XapI	RAATTY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	859
XspI	CTAG	2 cut(s)	56, 782
ZrmI	AGTACT	2 cut(s)	232, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.