Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009780

Physical Location & Seq

Genomic Coordinates Reverse (-)

62186292 .. 62189205

Gene Structure 2914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAGGAAGAAGACAGAGATGGACTACTGTACCATACTACTAGTCCTGATTCTTTCTGTCAAGCTTTGTGAAAGTGGGATCACAAGTAGTTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAAATGAACCTGGTTCAAGTACGGTGGTGTACTGGGCAGACAATAGTGGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTACTTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAGTTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATAACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTAAACCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCTTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCTATCAACCTTGGATTTGGACTGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGGTGAAAGTATACCATTCAAACCATATACAAATCGCTTTTTTGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGTTGCCTAAAGTGAACAGAACTGAGACACCATGGCTTATTGTTCTTGTGCATTGTCCAATGTATAGCAGCTATGTGCATCATTATATGGAAGGTGAAACCATGAGGGTTATGTATGAGCAATGGTTCGTGGATTATAAAGTAGATGTTGTCTTTGCCGGTCATGTTCATGCCTATGAACGATCTGAAAGGATATCAAACATTGCATACAACATAACAAATGGACTTTGCACTCCCATAAGTGACCAATCAGCGCCAGTTTACATAACAATTGGAGATGGAGGAAATCTAGAAGGATTGGTTACCGAAATGACAGAGCCGCAGCCAAGCTACTCGGCATTTCGTGAGGCTAGCTTTGGCCATGGGATTCTTGAGATCAAAAACAGAAGCTATGCCTTCTTCAGTTGGCATAGGAATCAAGATGGTTATGCAGTAGAAGCTGATTCTTTATGGTTACGCAACAGATATTGGAAAACTACTTTGGAAAAGTCCCTAACTGCGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

454

Amino Acids

52.36

Weight (kDa)

6.02

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	46 - 136	7.2e-19	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	147 - 345	2.1e-26	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	371 - 430	1.6e-17	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52940 AT2G27190
fragaria_vesca	FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890 FvH4_2g38890
malus_domestica	MD15G1020000.v1.1
prunus_persica	Prupe.1G372000_v2.0.a1
pyrus_communis	pycom15g01660
rosa_chinensis	RchiOBHm_Chr6g0301991
rosa_laevigata	RLG00000011210
rosa_multiflora	Rmu_sc0006892.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166210
rosa_rugosa	Rorug06G0310900
rosa_samantha	Rh6AG423400 Rh6BG430100 Rh6CG436500 Rh6DG423500
rosa_wichuraiana	Rw6G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	404, 996, 1363
AccI	GTMKAC	1 cut(s)	694
AciI	CCGC	2 cut(s)	650, 1178
AclWI	GGATC	2 cut(s)	86, 165
AcoI	YGGCCR	1 cut(s)	1216
AcuI	CTGAAG	3 cut(s)	726, 768, 1243
AfaI	GTAC	7 cut(s)	31, 217, 227, 290, 325, 751, 767
AfiI	CCNNNNNNNGG	4 cut(s)	419, 454, 518, 683
AgsI	TTSAA	5 cut(s)	213, 295, 480, 703, 854
AhlI	ACTAGT	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 1322, 1354
AluBI	AGCT	8 cut(s)	64, 740, 782, 930, 1188, 1212, 1248, 1298
AluI	AGCT	8 cut(s)	64, 740, 782, 930, 1188, 1212, 1248, 1298
Alw26I	GTCTC	2 cut(s)	382, 878
AlwI	GGATC	2 cut(s)	86, 165
AoxI	GGCC	2 cut(s)	445, 1216
ApeKI	GCWGC	3 cut(s)	623, 927, 1180
AspLEI	GCGC	1 cut(s)	1114
AspS9I	GGNCC	3 cut(s)	112, 422, 544
AsuHPI	GGTGA	3 cut(s)	202, 698, 965
AsuNHI	GCTAGC	1 cut(s)	1208
AvaII	GGWCC	3 cut(s)	112, 422, 544
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BalI	TGGCCA	1 cut(s)	1218
BarI	GAAGNNNNNNTAC	2 cut(s)	577, 609
BauI	CACGAG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	610, 939, 1192
BccI	CCATC	5 cut(s)	13, 582, 779, 1130, 1274
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	382, 878
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	3 cut(s)	41, 1148, 1209
BfoI	RGCGCY	1 cut(s)	1115
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	4 cut(s)	624, 928, 1178, 1181
BlsI	GCNGC	4 cut(s)	625, 929, 1179, 1182
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	3 cut(s)	112, 422, 544
BmgT120I	GGNCC	3 cut(s)	112, 422, 544
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	550, 946
BmtI	GCTAGC	1 cut(s)	1212
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	115, 1250
BsaBI	GATNNNNATC	2 cut(s)	480, 564
BsaJI	CCNNGG	3 cut(s)	635, 890, 1219
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 454, 518, 683
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	2 cut(s)	233, 1115
Bse3DI	GCAATG	2 cut(s)	986, 1059
Bse8I	GATNNNNATC	2 cut(s)	480, 564
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	635, 890, 1219
BseJI	GATNNNNATC	2 cut(s)	480, 564
BseLI	CCNNNNNNNGG	4 cut(s)	419, 454, 518, 683
BseMI	GCAATG	2 cut(s)	986, 1059
BseMII	CTCAG	2 cut(s)	851, 873
BseNI	ACTGG	2 cut(s)	233, 1115
BseRI	GAGGAG	3 cut(s)	666, 747, 825
BseXI	GCAGC	3 cut(s)	610, 939, 1192
BseYI	CCCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	447, 1218
BsiSI	CCGG	1 cut(s)	1017
BslFI	GGGAC	2 cut(s)	557, 1333
BslI	CCNNNNNNNGG	4 cut(s)	419, 454, 518, 683
BsmAI	GTCTC	2 cut(s)	382, 878
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	2 cut(s)	557, 1333
BsnI	GGCC	2 cut(s)	447, 1218
Bsp143I	GATC	4 cut(s)	78, 157, 1040, 1233
Bsp19I	CCATGG	2 cut(s)	890, 1219
BspACI	CCGC	2 cut(s)	650, 1178
BspANI	GGCC	2 cut(s)	447, 1218
BspCNI	CTCAG	2 cut(s)	850, 874
BspHI	TCATGA	2 cut(s)	160, 574
BspLI	GGNNCC	1 cut(s)	545
BspOI	GCTAGC	1 cut(s)	1212
BspPI	GGATC	2 cut(s)	86, 165
BsrDI	GCAATG	2 cut(s)	986, 1059
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	2 cut(s)	233, 1115
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	3 cut(s)	635, 890, 1219
BssMI	GATC	4 cut(s)	78, 157, 1040, 1233
BssNAI	GTATAC	1 cut(s)	695
BssSI	CACGAG	1 cut(s)	385
BssT1I	CCWWGG	3 cut(s)	635, 890, 1219
Bst1107I	GTATAC	1 cut(s)	695
Bst2BI	CACGAG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	5 cut(s)	29, 134, 220, 323, 529
BstC8I	GCNNGC	1 cut(s)	1210
BstDEI	CTNAG	2 cut(s)	837, 882
BstDSI	CCRYGG	2 cut(s)	890, 1219
BstEII	GGTNACC	1 cut(s)	1159
BstH2I	RGCGCY	1 cut(s)	1115
BstHHI	GCGC	1 cut(s)	1114
BstKTI	GATC	4 cut(s)	81, 160, 1043, 1236
BstMAI	GTCTC	2 cut(s)	382, 878
BstMBI	GATC	4 cut(s)	78, 157, 1040, 1233
BstMWI	GCNNNNNNNGC	1 cut(s)	1295
BstNI	CCWGG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	1159
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	610, 939, 1192
BstV2I	GAAGAC	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	695
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	447, 1218
BtgI	CCRYGG	2 cut(s)	890, 1219
BtsIMutI	CAGTG	2 cut(s)	139, 319
Cac8I	GCNNGC	1 cut(s)	1210
CciI	TCATGA	2 cut(s)	160, 574
CfoI	GCGC	1 cut(s)	1114
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	3 cut(s)	112, 422, 544
CsiI	ACCWGGT	1 cut(s)	205
Csp6I	GTAC	7 cut(s)	30, 216, 226, 289, 324, 750, 766
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	9 cut(s)	116, 161, 575, 597, 891, 961, 1022, 1028, 1220
CviQI	GTAC	7 cut(s)	30, 216, 226, 289, 324, 750, 766
DdeI	CTNAG	2 cut(s)	837, 882
DpnI	GATC	4 cut(s)	80, 159, 1042, 1235
DpnII	GATC	4 cut(s)	78, 157, 1040, 1233
EaeI	YGGCCR	1 cut(s)	1216
Eco130I	CCWWGG	3 cut(s)	635, 890, 1219
Eco32I	GATATC	1 cut(s)	1053
Eco47I	GGWCC	3 cut(s)	112, 422, 544
Eco57I	CTGAAG	3 cut(s)	726, 768, 1243
Eco91I	GGTNACC	1 cut(s)	1159
EcoO109I	RGGNCCY	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	1159
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	1053
EcoT14I	CCWWGG	3 cut(s)	635, 890, 1219
ErhI	CCWWGG	3 cut(s)	635, 890, 1219
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	9 cut(s)	119, 164, 578, 600, 894, 964, 1025, 1031, 1223
FaqI	GGGAC	2 cut(s)	557, 1333
FatI	CATG	9 cut(s)	115, 160, 574, 596, 890, 960, 1021, 1027, 1219
FauI	CCCGC	1 cut(s)	643
FauNDI	CATATG	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	624, 928, 1178, 1181
Fsp4HI	GCNGC	4 cut(s)	624, 928, 1178, 1181
FspBI	CTAG	3 cut(s)	41, 1148, 1209
GlaI	GCGC	1 cut(s)	1113
GluI	GCNGC	4 cut(s)	624, 928, 1178, 1181
GsaI	CCCAGC	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	1115
HaeIII	GGCC	2 cut(s)	447, 1218
HapII	CCGG	1 cut(s)	1017
HhaI	GCGC	1 cut(s)	1114
Hin1II	CATG	9 cut(s)	119, 164, 578, 600, 894, 964, 1025, 1031, 1223
Hin6I	GCGC	1 cut(s)	1112
HinP1I	GCGC	1 cut(s)	1112
HindIII	AAGCTT	2 cut(s)	62, 738
HinfI	GANTC	8 cut(s)	49, 193, 469, 476, 606, 1225, 1273, 1301
HpaII	CCGG	1 cut(s)	1017
HphI	GGTGA	3 cut(s)	202, 698, 965
Hpy166II	GTNNAC	4 cut(s)	226, 695, 874, 1120
Hpy188I	TCNGA	4 cut(s)	252, 468, 745, 1045
Hpy8I	GTNNAC	4 cut(s)	226, 695, 874, 1120
HpyAV	CCTTC	4 cut(s)	163, 944, 1145, 1264
HpyCH4III	ACNGT	5 cut(s)	29, 134, 220, 323, 529
HpyCH4IV	ACGT	2 cut(s)	138, 391
HpyCH4V	TGCA	6 cut(s)	557, 910, 937, 1064, 1089, 1289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1295
HpyF3I	CTNAG	2 cut(s)	837, 882
HpySE526I	ACGT	2 cut(s)	138, 391
Hsp92II	CATG	9 cut(s)	119, 164, 578, 600, 894, 964, 1025, 1031, 1223
HspAI	GCGC	1 cut(s)	1112
Kzo9I	GATC	4 cut(s)	78, 157, 1040, 1233
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	3 cut(s)	610, 939, 1192
LweI	GCATC	2 cut(s)	550, 946
MabI	ACCWGGT	1 cut(s)	205
MaeI	CTAG	3 cut(s)	41, 1148, 1209
MaeII	ACGT	2 cut(s)	138, 391
MaeIII	GTNAC	7 cut(s)	89, 134, 190, 308, 1100, 1159, 1311
MalI	GATC	4 cut(s)	80, 159, 1042, 1235
MboI	GATC	4 cut(s)	78, 157, 1040, 1233
MboII	GAAGA	4 cut(s)	19, 22, 597, 1249
MfeI	CAATTG	1 cut(s)	1128
MlsI	TGGCCA	1 cut(s)	1218
MluCI	AATT	4 cut(s)	295, 334, 663, 1128
MluNI	TGGCCA	1 cut(s)	1218
MlyI	GAGTC	2 cut(s)	187, 463
Mox20I	TGGCCA	1 cut(s)	1218
MscI	TGGCCA	1 cut(s)	1218
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	2 cut(s)	1026, 1032
Msp20I	TGGCCA	1 cut(s)	1218
MspI	CCGG	1 cut(s)	1017
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	1128
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	1295
NcoI	CCATGG	2 cut(s)	890, 1219
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	4 cut(s)	78, 157, 1040, 1233
NheI	GCTAGC	1 cut(s)	1208
NlaIII	CATG	9 cut(s)	119, 164, 578, 600, 894, 964, 1025, 1031, 1223
NlaIV	GGNNCC	1 cut(s)	545
NmeAIII	GCCGAG	2 cut(s)	794, 1172
NmuCI	GTSAC	3 cut(s)	134, 190, 1100
PagI	TCATGA	2 cut(s)	160, 574
PfeI	GAWTC	6 cut(s)	49, 476, 606, 1225, 1273, 1301
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	625, 929, 1179, 1182
PleI	GAGTC	2 cut(s)	187, 463
PpsI	GAGTC	2 cut(s)	187, 463
PpuMI	RGGWCCY	1 cut(s)	544
PsiI	TTATAA	3 cut(s)	404, 996, 1363
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	205
PspEI	GGTNACC	1 cut(s)	1159
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	3 cut(s)	112, 422, 544
PspPPI	RGGWCCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	7 cut(s)	31, 217, 227, 290, 325, 751, 767
RsaNI	GTAC	7 cut(s)	30, 216, 226, 289, 324, 750, 766
RseI	CAYNNNNRTG	2 cut(s)	1026, 1032
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	4 cut(s)	624, 928, 1178, 1181
Sau3AI	GATC	4 cut(s)	78, 157, 1040, 1233
Sau96I	GGNCC	3 cut(s)	112, 422, 544
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	2 cut(s)	187, 463
ScrFI	CCNGG	1 cut(s)	207
SexAI	ACCWGGT	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	550, 946
SinI	GGWCC	3 cut(s)	112, 422, 544
SmiMI	CAYNNNNRTG	2 cut(s)	1026, 1032
SmlI	CTYRAG	2 cut(s)	94, 1229
SmoI	CTYRAG	2 cut(s)	94, 1229
SpeI	ACTAGT	1 cut(s)	40
Sse9I	AATT	4 cut(s)	295, 334, 663, 1128
SsiI	CCGC	2 cut(s)	650, 1178
SspMI	CTAG	3 cut(s)	41, 1148, 1209
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	3 cut(s)	635, 890, 1219
TaaI	ACNGT	5 cut(s)	29, 134, 220, 323, 529
TaiI	ACGT	2 cut(s)	141, 394
TaqI	TCGA	1 cut(s)	484
TasI	AATT	4 cut(s)	295, 334, 663, 1128
TatI	WGTACW	3 cut(s)	225, 288, 749
TauI	GCSGC	1 cut(s)	1180
TfiI	GAWTC	6 cut(s)	49, 476, 606, 1225, 1273, 1301
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	139, 326
TseFI	GTSAC	3 cut(s)	134, 190, 1100
TseI	GCWGC	3 cut(s)	623, 927, 1180
Tsp45I	GTSAC	3 cut(s)	134, 190, 1100
TspDTI	ATGAA	7 cut(s)	131, 216, 305, 563, 598, 1016, 1050
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	139, 326
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	112, 422, 544
XbaI	TCTAGA	1 cut(s)	1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	694
XspI	CTAG	3 cut(s)	41, 1148, 1209
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.