Rroxscaffold_7G00166210

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
7757827 .. 7760394
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166210.1

Sequence Viewer

Length: 1413 bp
ATGAGGAAGAAGACAGAGATGGACTACTCTACTGGGCTTGTAGCGGCTACCACACTAGTCCTGATTCTTTCTGTCAAGCTTTGTGAAAGTGGGATCACAAGTAGGTACTTGAGGAACGATGACTTGGTCCATGATATGCCTTTAGACAGTGACGTGTTCCGATCCCCTCCTGGGTATAATTCCCCTCAACAGGTTCATATAACACAAGGGGATCATGAGGGGAAGGGAGTGATTGTGTCTTGGGTGACTCCAGATGAACCTGGTTCAAGTACTGTGGTGTACTGGGCAGACAATAGTGGCAATCTGAAAAAGACTGCTTATGGCATTGTTCTTACTTACAAGTACTTCAATTACACCTCTGGTTACATTCATCACTGTACCATTGACAATTTGGAGTTTGACACCAAATACTACTATCAAGTTGGGATTGGGAATACCACGAGACGTTTTTGGTTTATAACCCCTCCTAAAGTTGGTCCTGATGTTCCCTATACTTTTGGCCTCATAGGGGATATTGGTCAGACTCCTGATTCAAATCGAACACTTACTCATTATGAGTTAAGCCCAGCAAAAGGACAGACGGTGTTGTTCGTTGGGGACCTCTCTTATGCAGATGCTTATCCGTTTCATGACAATAGAAGATGGGATACATGGGGGAGATTCATAGAGAGAAATGCTGCCCATCAACCTTGGATTTGGACAGCGGGAAATCACGAAATTGATTTTGCTCCTCAATATGGTGAAAGTATACCATTCAAACCATATACAAATCGCTTTTTTGTTCCATACAAAGCTTCAGATAGTACATCTCCTCTGTGGTACTCCATCAAGAGAGCTTCAGCATATATCATAGTCTTGTCCTCTTACTCGGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGTTGCCTAAAGTGAACAGAACTGAGACACCATGGCTTATTGTTCTTGTGCATTGTCCAATGTATAGCAGCTATGTGCATCATTATATGGAAGGTGAAACCATGAGGGTTATGTATGAGCAATGGTTTGTGGATTATAGAGTAGATGTTGTCTTTGCCGGTCATGTTCATGCCTATGAACGATCTGAAAGGATATCAAACATTGCATACAACATAACAAATGGACTTTGCACTCCCATAAGTGACCAATCAGCGCCAGTTTACATAACAATTGGAGATGGAGGAAATCTAGAAGGATTGGTTACCGAAATGACAGAGCCGCAGCCAAGCTACTCGGCATTTCGTGAGGCTAGCTTTGGCCATGGGATTCTTGAGATCAGAAACAGAAGCTATGCCTTCTTCAGTTGGCATAGGAATCAAGATGGCTATGCAGTAGAAGCTGATTCTTTATGGTTACGCAACAGATATTGGAAAACTACTTTGGAACAGTCATCGTCCTAA

Protein Analysis

470

Amino Acids

54.04

Weight (kDa)

6.06

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 62 - 154 9.8e-21 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 165 - 363 1.4e-25 Calcineurin-like phosphoesterase
Metallophos_C PF14008 389 - 448 5.9e-17 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009780)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccI GTMKAC 1 cut(s) 748
AciI CCGC 3 cut(s) 44, 704, 1232
AclWI GGATC 3 cut(s) 101, 156, 219
AcoI YGGCCR 1 cut(s) 1270
AcuI CTGAAG 3 cut(s) 780, 822, 1297
AfaI GTAC 7 cut(s) 107, 271, 281, 344, 379, 805, 821
AfiI CCNNNNNNNGG 6 cut(s) 171, 190, 473, 508, 572, 737
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 5 cut(s) 267, 349, 534, 757, 908
AhlI ACTAGT 1 cut(s) 55
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 169, 259
AjuI GAANNNNNNNTTGG 4 cut(s) 107, 139, 1376, 1408
AluBI AGCT 8 cut(s) 79, 794, 836, 984, 1242, 1266, 1302, 1352
AluI AGCT 8 cut(s) 79, 794, 836, 984, 1242, 1266, 1302, 1352
Alw26I GTCTC 2 cut(s) 436, 932
AlwI GGATC 3 cut(s) 101, 156, 219
AoxI GGCC 2 cut(s) 499, 1270
ApeKI GCWGC 3 cut(s) 677, 981, 1234
AspLEI GCGC 1 cut(s) 1168
AspS9I GGNCC 3 cut(s) 127, 476, 598
AsuHPI GGTGA 3 cut(s) 256, 752, 1019
AsuNHI GCTAGC 1 cut(s) 1262
AvaII GGWCC 3 cut(s) 127, 476, 598
BalI TGGCCA 1 cut(s) 1272
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
BauI CACGAG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 664, 993, 1246
BccI CCATC 6 cut(s) 13, 636, 690, 833, 1184, 1328
BciT130I CCWGG 2 cut(s) 171, 261
BciVI GTATCC 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 436, 932
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 3 cut(s) 56, 1202, 1263
BfoI RGCGCY 1 cut(s) 1169
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 5 cut(s) 45, 678, 982, 1232, 1235
BlsI GCNGC 5 cut(s) 46, 679, 983, 1233, 1236
BmcAI AGTACT 2 cut(s) 271, 344
Bme1390I CCNGG 2 cut(s) 171, 261
Bme18I GGWCC 3 cut(s) 127, 476, 598
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 127, 476, 598
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 2 cut(s) 171, 261
BmrI ACTGGG 2 cut(s) 42, 292
BmsI GCATC 2 cut(s) 604, 1000
BmtI GCTAGC 1 cut(s) 1266
BmuI ACTGGG 2 cut(s) 42, 292
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 130, 1304
BsaBI GATNNNNATC 2 cut(s) 534, 618
BsaJI CCNNGG 4 cut(s) 170, 689, 944, 1273
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 190, 473, 508, 572, 737
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 3 cut(s) 37, 287, 1169
Bse3DI GCAATG 2 cut(s) 1040, 1113
Bse8I GATNNNNATC 2 cut(s) 534, 618
BseBI CCWGG 2 cut(s) 171, 261
BseDI CCNNGG 4 cut(s) 170, 689, 944, 1273
BseJI GATNNNNATC 2 cut(s) 534, 618
BseLI CCNNNNNNNGG 6 cut(s) 171, 190, 473, 508, 572, 737
BseMI GCAATG 2 cut(s) 1040, 1113
BseMII CTCAG 2 cut(s) 905, 927
BseNI ACTGG 3 cut(s) 37, 287, 1169
BseRI GAGGAG 3 cut(s) 720, 801, 879
BseXI GCAGC 3 cut(s) 664, 993, 1246
BseYI CCCAGC 1 cut(s) 565
BshFI GGCC 2 cut(s) 501, 1272
BsiSI CCGG 1 cut(s) 1071
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 6 cut(s) 171, 190, 473, 508, 572, 737
BsmAI GTCTC 2 cut(s) 436, 932
BsmBI CGTCTC 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 2 cut(s) 501, 1272
Bsp143I GATC 5 cut(s) 93, 161, 211, 1094, 1287
Bsp19I CCATGG 2 cut(s) 944, 1273
BspACI CCGC 3 cut(s) 44, 704, 1232
BspANI GGCC 2 cut(s) 501, 1272
BspCNI CTCAG 2 cut(s) 904, 928
BspHI TCATGA 2 cut(s) 214, 628
BspLI GGNNCC 1 cut(s) 599
BspOI GCTAGC 1 cut(s) 1266
BspPI GGATC 3 cut(s) 101, 156, 219
BsrDI GCAATG 2 cut(s) 1040, 1113
BsrFI RCCGGY 1 cut(s) 1070
BsrI ACTGG 3 cut(s) 37, 287, 1169
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 4 cut(s) 170, 689, 944, 1273
BssMI GATC 5 cut(s) 93, 161, 211, 1094, 1287
BssNAI GTATAC 1 cut(s) 749
BssSI CACGAG 1 cut(s) 439
BssT1I CCWWGG 3 cut(s) 689, 944, 1273
Bst1107I GTATAC 1 cut(s) 749
Bst2BI CACGAG 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 171, 261
Bst4CI ACNGT 5 cut(s) 149, 274, 377, 583, 1401
BstC8I GCNNGC 1 cut(s) 1264
BstDEI CTNAG 2 cut(s) 891, 936
BstDSI CCRYGG 2 cut(s) 944, 1273
BstEII GGTNACC 1 cut(s) 1213
BstH2I RGCGCY 1 cut(s) 1169
BstHHI GCGC 1 cut(s) 1168
BstKTI GATC 5 cut(s) 96, 164, 214, 1097, 1290
BstMAI GTCTC 2 cut(s) 436, 932
BstMBI GATC 5 cut(s) 93, 161, 211, 1094, 1287
BstMWI GCNNNNNNNGC 1 cut(s) 1349
BstNI CCWGG 2 cut(s) 171, 261
BstPI GGTNACC 1 cut(s) 1213
BstSCI CCNGG 2 cut(s) 169, 259
BstV1I GCAGC 3 cut(s) 664, 993, 1246
BstV2I GAAGAC 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 749
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 501, 1272
BtgI CCRYGG 2 cut(s) 944, 1273
BtrI CACGTC 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 154, 373
Cac8I GCNNGC 1 cut(s) 1264
CciI TCATGA 2 cut(s) 214, 628
CfoI GCGC 1 cut(s) 1168
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 3 cut(s) 127, 476, 598
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 7 cut(s) 106, 270, 280, 343, 378, 804, 820
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 9 cut(s) 131, 215, 629, 651, 945, 1015, 1076, 1082, 1274
CviQI GTAC 7 cut(s) 106, 270, 280, 343, 378, 804, 820
DdeI CTNAG 2 cut(s) 891, 936
DpnI GATC 5 cut(s) 95, 163, 213, 1096, 1289
DpnII GATC 5 cut(s) 93, 161, 211, 1094, 1287
EaeI YGGCCR 1 cut(s) 1270
Eco130I CCWWGG 3 cut(s) 689, 944, 1273
Eco32I GATATC 1 cut(s) 1107
Eco47I GGWCC 3 cut(s) 127, 476, 598
Eco57I CTGAAG 3 cut(s) 780, 822, 1297
Eco91I GGTNACC 1 cut(s) 1213
EcoO109I RGGNCCY 1 cut(s) 598
EcoO65I GGTNACC 1 cut(s) 1213
EcoRII CCWGG 2 cut(s) 169, 259
EcoRV GATATC 1 cut(s) 1107
EcoT14I CCWWGG 3 cut(s) 689, 944, 1273
ErhI CCWWGG 3 cut(s) 689, 944, 1273
Esp3I CGTCTC 1 cut(s) 436
FaeI CATG 9 cut(s) 134, 218, 632, 654, 948, 1018, 1079, 1085, 1277
FaqI GGGAC 1 cut(s) 611
FatI CATG 9 cut(s) 130, 214, 628, 650, 944, 1014, 1075, 1081, 1273
FauI CCCGC 1 cut(s) 697
FauNDI CATATG 1 cut(s) 874
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 5 cut(s) 45, 678, 982, 1232, 1235
Fsp4HI GCNGC 5 cut(s) 45, 678, 982, 1232, 1235
FspBI CTAG 3 cut(s) 56, 1202, 1263
GlaI GCGC 1 cut(s) 1167
GluI GCNGC 5 cut(s) 45, 678, 982, 1232, 1235
GsaI CCCAGC 1 cut(s) 569
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 1169
HaeIII GGCC 2 cut(s) 501, 1272
HapII CCGG 1 cut(s) 1071
HhaI GCGC 1 cut(s) 1168
Hin1II CATG 9 cut(s) 134, 218, 632, 654, 948, 1018, 1079, 1085, 1277
Hin6I GCGC 1 cut(s) 1166
HinP1I GCGC 1 cut(s) 1166
HindIII AAGCTT 2 cut(s) 77, 792
HinfI GANTC 8 cut(s) 64, 247, 523, 530, 660, 1279, 1327, 1355
HpaII CCGG 1 cut(s) 1071
HphI GGTGA 3 cut(s) 256, 752, 1019
Hpy166II GTNNAC 4 cut(s) 280, 749, 928, 1174
Hpy188I TCNGA 6 cut(s) 161, 306, 522, 799, 1099, 1292
Hpy8I GTNNAC 4 cut(s) 280, 749, 928, 1174
HpyAV CCTTC 4 cut(s) 217, 998, 1199, 1318
HpyCH4III ACNGT 5 cut(s) 149, 274, 377, 583, 1401
HpyCH4IV ACGT 2 cut(s) 153, 445
HpyCH4V TGCA 6 cut(s) 611, 964, 991, 1118, 1143, 1343
HpyF10VI GCNNNNNNNGC 1 cut(s) 1349
HpyF3I CTNAG 2 cut(s) 891, 936
HpySE526I ACGT 2 cut(s) 153, 445
Hsp92II CATG 9 cut(s) 134, 218, 632, 654, 948, 1018, 1079, 1085, 1277
HspAI GCGC 1 cut(s) 1166
Kzo9I GATC 5 cut(s) 93, 161, 211, 1094, 1287
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 3 cut(s) 664, 993, 1246
LweI GCATC 2 cut(s) 604, 1000
MabI ACCWGGT 1 cut(s) 259
MaeI CTAG 3 cut(s) 56, 1202, 1263
MaeII ACGT 2 cut(s) 153, 445
MaeIII GTNAC 6 cut(s) 149, 244, 362, 1154, 1213, 1365
MalI GATC 5 cut(s) 95, 163, 213, 1096, 1289
MboI GATC 5 cut(s) 93, 161, 211, 1094, 1287
MboII GAAGA 4 cut(s) 19, 22, 651, 1303
MfeI CAATTG 1 cut(s) 1182
MlsI TGGCCA 1 cut(s) 1272
MluCI AATT 5 cut(s) 178, 349, 388, 717, 1182
MluNI TGGCCA 1 cut(s) 1272
MlyI GAGTC 2 cut(s) 241, 517
Mox20I TGGCCA 1 cut(s) 1272
MscI TGGCCA 1 cut(s) 1272
MseI TTAA 1 cut(s) 560
MslI CAYNNNNRTG 2 cut(s) 1080, 1086
Msp20I TGGCCA 1 cut(s) 1272
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 1 cut(s) 1071
MspR9I CCNGG 2 cut(s) 171, 261
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 2 cut(s) 171, 261
MwoI GCNNNNNNNGC 1 cut(s) 1349
NcoI CCATGG 2 cut(s) 944, 1273
NdeI CATATG 1 cut(s) 874
NdeII GATC 5 cut(s) 93, 161, 211, 1094, 1287
NheI GCTAGC 1 cut(s) 1262
NlaIII CATG 9 cut(s) 134, 218, 632, 654, 948, 1018, 1079, 1085, 1277
NlaIV GGNNCC 1 cut(s) 599
NmeAIII GCCGAG 2 cut(s) 848, 1226
NmuCI GTSAC 3 cut(s) 149, 244, 1154
PagI TCATGA 2 cut(s) 214, 628
PfeI GAWTC 6 cut(s) 64, 530, 660, 1279, 1327, 1355
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 46, 679, 983, 1233, 1236
PleI GAGTC 2 cut(s) 241, 517
PpsI GAGTC 2 cut(s) 241, 517
PpuMI RGGWCCY 1 cut(s) 598
PsiI TTATAA 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 169, 259
PspEI GGTNACC 1 cut(s) 1213
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 2 cut(s) 169, 259
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 3 cut(s) 127, 476, 598
PspPPI RGGWCCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 7 cut(s) 107, 271, 281, 344, 379, 805, 821
RsaNI GTAC 7 cut(s) 106, 270, 280, 343, 378, 804, 820
RseI CAYNNNNRTG 2 cut(s) 1080, 1086
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 5 cut(s) 45, 678, 982, 1232, 1235
Sau3AI GATC 5 cut(s) 93, 161, 211, 1094, 1287
Sau96I GGNCC 3 cut(s) 127, 476, 598
ScaI AGTACT 2 cut(s) 271, 344
SchI GAGTC 2 cut(s) 241, 517
ScrFI CCNGG 2 cut(s) 171, 261
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 2 cut(s) 604, 1000
SinI GGWCC 3 cut(s) 127, 476, 598
SmiMI CAYNNNNRTG 2 cut(s) 1080, 1086
SmlI CTYRAG 2 cut(s) 109, 1283
SmoI CTYRAG 2 cut(s) 109, 1283
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 5 cut(s) 178, 349, 388, 717, 1182
SsiI CCGC 3 cut(s) 44, 704, 1232
SspMI CTAG 3 cut(s) 56, 1202, 1263
StyD4I CCNGG 2 cut(s) 169, 259
StyI CCWWGG 3 cut(s) 689, 944, 1273
TaaI ACNGT 5 cut(s) 149, 274, 377, 583, 1401
TaiI ACGT 2 cut(s) 156, 448
TaqI TCGA 1 cut(s) 538
TasI AATT 5 cut(s) 178, 349, 388, 717, 1182
TatI WGTACW 4 cut(s) 269, 279, 342, 803
TauI GCSGC 2 cut(s) 47, 1234
TfiI GAWTC 6 cut(s) 64, 530, 660, 1279, 1327, 1355
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 2 cut(s) 154, 380
TseFI GTSAC 3 cut(s) 149, 244, 1154
TseI GCWGC 3 cut(s) 677, 981, 1234
Tsp45I GTSAC 3 cut(s) 149, 244, 1154
TspDTI ATGAA 7 cut(s) 185, 270, 359, 617, 652, 1070, 1104
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 2 cut(s) 154, 380
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 3 cut(s) 127, 476, 598
XbaI TCTAGA 1 cut(s) 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 748
XspI CTAG 3 cut(s) 56, 1202, 1263
ZrmI AGTACT 2 cut(s) 271, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.