Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Reverse (-)

19744948 .. 19747804

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCGGTGTGTTCTTCGTCTTCTTCTTCTCAGAAAACATGGATTGTTAACGGGATCTTGGCCGGAACAGCGATTGCAGCCGCAATCGGCGCACGTGCTTATCTGGGTCGATCCAAGAAATTCCGGAGCCGGGTCGTCGGAATCATTCCCGCACGTTACGCTTCCTCTCGATTCGAGGGTAAGCCTCTCGTGCAAATCCTCGGCAAACCCATGATCCAGAGAACTTGGGAGAGGTCGAAGTTAGCTACTACGCTTGATCATATTGTTGTAGCCACTGATGATGAAAGAATCGCGGAGTGTTGTCGTGGATTTGGTGCCGATGTTATCATGACTTCAGAGTCTTGCAGAAATGGCACTGAGAGGTGCAACGAAGCGCTAGAAAAGCTGGAGAAGAAGTATGATGTCGTTGTTAACATTCAAGGAGATGAACCACTTATTGAGCCTGAGATTATAGACGGTGTAGTCAAAGCACTTCAGGTAACACCGGATGCAGTGTTTAGCACAGCGGTGACATCATTGAAACCAGAAGACGGGCTTGATCCTAACCGAGTTAAATGTGTGGTGGACAATCGTGGCTATGCTATCTATTTCTCAAGGGGTTTGATTCCTTATAACAAGAGTGGTAAAGTCAATCCAGATTTTCCGTACATGCTTCATCTTGGAATTCAGAGCTTTGATTCGAAGTTTCTGAAGGTATATTCAGAGCTTCAACCAACGCCATTGCAGCAAGAAGAGGATCTAGAACAGCTCAAAGTTCTTGAGAATGGCTACAAAATGAAGGTTATAAAGGTAGATCATGAAGCTCATGGAGTTGACACACCCGATGATGTCGAAAAGATTGAATCTTTAATGCGCGAAAGAAACATGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008690 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019867 GO:0022414 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0033467 GO:0033468 GO:0034641 GO:0034654 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055086 GO:0060560 GO:0070567 GO:0071704 GO:0071840 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

290

Amino Acids

32.24

Weight (kDa)

6.16

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_3	PF02348	46 - 258	7.4e-58	Cytidylyltransferase
NTP_transf_3	PF12804	55 - 166	3.3e-10	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	612, 785
AasI	GACNNNNNNGTC	2 cut(s)	337, 461
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	2 cut(s)	293, 855
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	4 cut(s)	81, 150, 293, 506
AclWI	GGATC	5 cut(s)	62, 105, 208, 533, 744
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	119, 663
AcuI	CTGAAG	3 cut(s)	318, 458, 710
AcvI	CACGTG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	647
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	130, 530
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	4 cut(s)	419, 520, 710, 842
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	6 cut(s)	245, 385, 672, 706, 748, 803
AluI	AGCT	6 cut(s)	245, 385, 672, 706, 748, 803
AlwI	GGATC	5 cut(s)	62, 105, 208, 533, 744
Aor13HI	TCCGGA	1 cut(s)	123
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	77, 724
ApoI	RAATTY	2 cut(s)	119, 663
AspLEI	GCGC	3 cut(s)	92, 376, 855
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	520
AsuII	TTCGAA	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	95
BbsI	GAAGAC	2 cut(s)	12, 534
BbvI	GCAGC	2 cut(s)	89, 736
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	3 cut(s)	377, 740, 871
BfoI	RGCGCY	1 cut(s)	377
BisI	GCNGC	3 cut(s)	78, 81, 725
BlsI	GCNGC	3 cut(s)	79, 82, 726
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	128, 316
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	2 cut(s)	12, 534
BpmI	CTGGAG	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	680
BpuEI	CTTGAG	2 cut(s)	577, 779
BpuMI	CCSGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	2 cut(s)	123, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 530
Bse3DI	GCAATG	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	130, 530
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	3 cut(s)	44, 348, 435
BseXI	GCAGC	2 cut(s)	89, 736
Bsh1236I	CGCG	2 cut(s)	293, 855
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	4 cut(s)	63, 124, 130, 485
BslI	CCNNNNNNNGG	2 cut(s)	130, 530
BsnI	GGCC	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	680
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
BspACI	CCGC	4 cut(s)	81, 150, 293, 506
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	43, 349, 436
BspEI	TCCGGA	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	293, 855
BspHI	TCATGA	2 cut(s)	327, 796
BspLI	GGNNCC	2 cut(s)	128, 316
BspPI	GGATC	5 cut(s)	62, 105, 208, 533, 744
BspT104I	TTCGAA	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	726
BstBAI	YACGTR	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	680
BstDEI	CTNAG	3 cut(s)	30, 357, 444
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	2 cut(s)	293, 855
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	3 cut(s)	92, 376, 855
BstKTI	GATC	7 cut(s)	57, 113, 216, 259, 541, 739, 796
BstMBI	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 77, 89, 158, 190, 351, 382, 724
BstNSI	RCATGY	2 cut(s)	652, 868
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	293, 855
BstV1I	GCAGC	2 cut(s)	89, 736
BstV2I	GAAGAC	2 cut(s)	12, 534
BstX2I	RGATCY	2 cut(s)	54, 736
BstYI	RGATCY	2 cut(s)	54, 736
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	273, 354, 498
CciI	TCATGA	2 cut(s)	327, 796
CfoI	GCGC	3 cut(s)	92, 376, 855
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	7 cut(s)	39, 211, 328, 649, 797, 806, 865
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	3 cut(s)	30, 357, 444
DpnI	GATC	7 cut(s)	56, 112, 215, 258, 540, 738, 795
DpnII	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
DrdI	GACNNNNNNGTC	2 cut(s)	337, 461
DseDI	GACNNNNNNGTC	2 cut(s)	337, 461
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco47III	AGCGCT	1 cut(s)	375
Eco57I	CTGAAG	3 cut(s)	318, 458, 710
Eco72I	CACGTG	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	663
FaeI	CATG	7 cut(s)	42, 214, 331, 652, 800, 809, 868
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	7 cut(s)	38, 210, 327, 648, 796, 805, 864
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	78, 81, 725
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	3 cut(s)	78, 81, 725
FspBI	CTAG	3 cut(s)	377, 740, 871
GlaI	GCGC	3 cut(s)	91, 375, 854
GluI	GCNGC	3 cut(s)	78, 81, 725
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	4 cut(s)	63, 124, 130, 485
HhaI	GCGC	3 cut(s)	92, 376, 855
Hin1II	CATG	7 cut(s)	42, 214, 331, 652, 800, 809, 868
Hin6I	GCGC	3 cut(s)	90, 374, 853
HinP1I	GCGC	3 cut(s)	90, 374, 853
HincII	GTYRAC	3 cut(s)	49, 412, 814
HindII	GTYRAC	3 cut(s)	49, 412, 814
HinfI	GANTC	7 cut(s)	141, 171, 288, 338, 604, 677, 842
HpaI	GTTAAC	2 cut(s)	49, 412
HpaII	CCGG	4 cut(s)	63, 124, 130, 485
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	4 cut(s)	49, 412, 565, 814
Hpy188I	TCNGA	6 cut(s)	33, 140, 337, 669, 690, 703
Hpy188III	TCNNGA	8 cut(s)	124, 168, 217, 328, 635, 740, 758, 797
Hpy8I	GTNNAC	4 cut(s)	49, 412, 565, 814
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	685, 772
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	2 cut(s)	94, 154
HpyCH4V	TGCA	6 cut(s)	77, 193, 345, 366, 491, 724
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 77, 89, 158, 190, 351, 382, 724
HpyF3I	CTNAG	3 cut(s)	30, 357, 444
HpySE526I	ACGT	2 cut(s)	94, 154
Hsp92II	CATG	7 cut(s)	42, 214, 331, 652, 800, 809, 868
HspAI	GCGC	3 cut(s)	90, 374, 853
Kpn2I	TCCGGA	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	2 cut(s)	49, 412
Kzo9I	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	2 cut(s)	89, 736
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	3 cut(s)	377, 740, 871
MaeII	ACGT	2 cut(s)	94, 154
MaeIII	GTNAC	3 cut(s)	155, 478, 508
MalI	GATC	7 cut(s)	56, 112, 215, 258, 540, 738, 795
MboI	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
MboII	GAAGA	7 cut(s)	6, 12, 15, 18, 403, 539, 743
MflI	RGATCY	2 cut(s)	54, 736
MluCI	AATT	2 cut(s)	119, 663
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	7 cut(s)	169, 175, 195, 209, 225, 354, 727
MroI	TCCGGA	1 cut(s)	123
MseI	TTAA	4 cut(s)	48, 411, 552, 848
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	4 cut(s)	63, 124, 130, 485
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	2 cut(s)	293, 855
MwoI	GCNNNNNNNGC	8 cut(s)	68, 77, 89, 158, 190, 351, 382, 724
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
NlaIII	CATG	7 cut(s)	42, 214, 331, 652, 800, 809, 868
NlaIV	GGNNCC	2 cut(s)	128, 316
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	2 cut(s)	652, 868
NspV	TTCGAA	1 cut(s)	680
OliI	CACNNNNGTG	1 cut(s)	506
PagI	TCATGA	2 cut(s)	327, 796
PciI	ACATGT	1 cut(s)	864
PfeI	GAWTC	6 cut(s)	141, 171, 288, 604, 677, 842
PkrI	GCNGC	3 cut(s)	79, 82, 726
PleI	GAGTC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	95
PscI	ACATGT	1 cut(s)	864
PsiI	TTATAA	2 cut(s)	612, 785
PspCI	CACGTG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	128, 316
PsuI	RGATCY	2 cut(s)	54, 736
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	4 cut(s)	48, 411, 552, 848
SatI	GCNGC	3 cut(s)	78, 81, 725
Sau3AI	GATC	7 cut(s)	54, 110, 213, 256, 538, 736, 793
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	592, 758
SmoI	CTYRAG	2 cut(s)	592, 758
Sse9I	AATT	2 cut(s)	119, 663
SsiI	CCGC	4 cut(s)	81, 150, 293, 506
SspMI	CTAG	3 cut(s)	377, 740, 871
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	2 cut(s)	97, 157
TaqI	TCGA	6 cut(s)	109, 169, 174, 236, 680, 831
TasI	AATT	2 cut(s)	119, 663
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	6 cut(s)	141, 171, 288, 604, 677, 842
Tru1I	TTAA	4 cut(s)	48, 411, 552, 848
Tru9I	TTAA	4 cut(s)	48, 411, 552, 848
TscAI	CASTG	3 cut(s)	280, 361, 498
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	77, 724
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	5 cut(s)	297, 441, 644, 791, 813
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	3 cut(s)	280, 361, 498
XapI	RAATTY	2 cut(s)	119, 663
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	2 cut(s)	652, 868
XspI	CTAG	3 cut(s)	377, 740, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.