Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Reverse (-)

18574185 .. 18576872

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGTCTTGCCTGTCGTCATCGTCGTCGTCGTCTGGATCTTGGAACAGCACCAAGGCATGGATCGTTCACGGAATCGTCGCCGGAGTTGCGGTTGCGGCGGCAATTGGGGCCCGGGCCTACCTGGGTCCGACTAGGAAGTTCCGGAGCCGGGTAGTCGGCATTATACCCGCTCGCTACGCTTCTTCTCGTTTCCAGGGCAAGCCCCTCGTTCAGATCCTCGGAAAACCCATGATTCAGAGAACATGGGAAAGGGCAAAACTAGCAAGTACATTGGATCATGTTGTTGTGGCAACAGATGACGAGAAGATTCGAGAATGTTGTCGCAGTTTTGGAGCTGATGTCATAATGACCTCGGAATCCTGCCAGAACGGTACCGAGCGTTGTTCTGAAGCAATCGAGAAGCTCGAGAAGAAGTATGATATAGTTGTCAACATTCAGGGGGATGAGCCTCTTATTGAACCTGAGATAATAGATGGAATTGTTAAAGCTTTGCAGGCAGCTCCAGATGCAGTGTTTAGCACTGCCGTCACGTCATTAAAACTTGAAGATGCAATGGATCCAAATCGAGTGAAATGTGTGGTGAATAATAGTGGTTATGCCATCTACTTTTCAAGGGGGTTGATTCCATTTAACAAGTCAGGAAAGGCCAATCCACAGTTTCCCTATTTGCTTCATCTTGGAATTCAGAGCTATGATACAAAGTTTCTAAAGATATATCCAGAACTTCAACCTACTCCGTTGCAACTAGAAGAGGATCTGGAGCAGCTTAAGGTCCTTGAAAATGGGTATAAGATGAAGGTGATTAAGGTCGACCATGAGGCTCACGCTGTTGACACCCCAGAAGATGTTGAAAAGATTGAATCTCTGATGCGCGAAAGGAACCTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008690 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019867 GO:0022414 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0033467 GO:0033468 GO:0034641 GO:0034654 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055086 GO:0060560 GO:0070567 GO:0071704 GO:0071840 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

298

Amino Acids

32.82

Weight (kDa)

6.55

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	813
AccII	CGCG	1 cut(s)	876
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	4 cut(s)	92, 98, 101, 171
AclWI	GGATC	7 cut(s)	46, 71, 211, 285, 554, 567, 765
AcsI	RAATTY	1 cut(s)	684
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	271, 376
AfiI	CCNNNNNNNGG	2 cut(s)	60, 151
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	7 cut(s)	461, 548, 615, 731, 782, 854, 863
AjiI	CACGTC	1 cut(s)	534
AjnI	CCWGG	2 cut(s)	123, 195
AluBI	AGCT	6 cut(s)	338, 406, 491, 503, 693, 769
AluI	AGCT	6 cut(s)	338, 406, 491, 503, 693, 769
AlwI	GGATC	7 cut(s)	46, 71, 211, 285, 554, 567, 765
Ama87I	CYCGRG	2 cut(s)	114, 407
Aor13HI	TCCGGA	1 cut(s)	144
AoxI	GGCC	3 cut(s)	111, 117, 648
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	500, 766
ApoI	RAATTY	1 cut(s)	684
Asp718I	GGTACC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	876
AspS9I	GGNCC	5 cut(s)	111, 112, 117, 128, 775
AsuC2I	CCSGG	3 cut(s)	115, 116, 152
AsuHPI	GGTGA	2 cut(s)	595, 814
AvaI	CYCGRG	2 cut(s)	114, 407
AvaII	GGWCC	2 cut(s)	128, 775
BaeGI	GKGCMC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	512, 778
BccI	CCATC	2 cut(s)	470, 611
BceAI	ACGGC	1 cut(s)	512
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	2 cut(s)	125, 197
BcnI	CCSGG	3 cut(s)	115, 116, 152
BfaI	CTAG	3 cut(s)	135, 263, 749
BfrI	CTTAAG	1 cut(s)	770
BisI	GCNGC	4 cut(s)	99, 102, 501, 767
BlsI	GCNGC	4 cut(s)	100, 103, 502, 768
Bme1390I	CCNGG	5 cut(s)	115, 116, 125, 152, 197
Bme18I	GGWCC	2 cut(s)	128, 775
BmeT110I	CYCGRG	2 cut(s)	114, 407
BmgBI	CACGTC	1 cut(s)	534
BmgT120I	GGNCC	5 cut(s)	111, 112, 117, 128, 775
BmiI	GGNNCC	7 cut(s)	112, 113, 129, 149, 376, 561, 884
BmrFI	CCNGG	5 cut(s)	115, 116, 125, 152, 197
BmsI	GCATC	3 cut(s)	499, 541, 861
BpmI	CTGGAG	2 cut(s)	489, 782
BpuMI	CCSGG	3 cut(s)	115, 116, 152
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	6 cut(s)	54, 114, 124, 196, 220, 354
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 151
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	125, 197
BseDI	CCNNGG	6 cut(s)	54, 114, 124, 196, 220, 354
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	2 cut(s)	60, 151
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	512, 778
Bsh1236I	CGCG	1 cut(s)	876
BshFI	GGCC	3 cut(s)	113, 119, 650
BshNI	GGYRCC	1 cut(s)	374
BsiHKCI	CYCGRG	2 cut(s)	114, 407
BsiSI	CCGG	4 cut(s)	84, 115, 145, 151
BslI	CCNNNNNNNGG	2 cut(s)	60, 151
BsnI	GGCC	3 cut(s)	113, 119, 650
BsoBI	CYCGRG	2 cut(s)	114, 407
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
BspACI	CCGC	4 cut(s)	92, 98, 101, 171
BspANI	GGCC	3 cut(s)	113, 119, 650
BspCNI	CTCAG	1 cut(s)	457
BspEI	TCCGGA	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	876
BspLI	GGNNCC	7 cut(s)	112, 113, 129, 149, 376, 561, 884
BspPI	GGATC	7 cut(s)	46, 71, 211, 285, 554, 567, 765
BspT107I	GGYRCC	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	770
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	561
BssECI	CCNNGG	6 cut(s)	54, 114, 124, 196, 220, 354
BssMI	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	125, 197
Bst4CI	ACNGT	2 cut(s)	374, 660
Bst6I	CTCTTC	1 cut(s)	747
BstAFI	CTTAAG	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	175, 203, 498
BstDEI	CTNAG	2 cut(s)	465, 891
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	876
BstHHI	GCGC	1 cut(s)	876
BstKTI	GATC	6 cut(s)	41, 66, 219, 280, 562, 760
BstMBI	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 98, 110, 179, 263, 497, 509
BstNI	CCWGG	2 cut(s)	125, 197
BstSCI	CCNGG	5 cut(s)	113, 114, 123, 150, 195
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	876
BstV1I	GCAGC	2 cut(s)	512, 778
BstX2I	RGATCY	4 cut(s)	38, 216, 559, 757
BstYI	RGATCY	4 cut(s)	38, 216, 559, 757
BsuRI	GGCC	3 cut(s)	113, 119, 650
BtrI	CACGTC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	2 cut(s)	519, 522
BtsIMutI	CAGTG	2 cut(s)	519, 522
Cac8I	GCNNGC	3 cut(s)	175, 203, 498
CfoI	GCGC	1 cut(s)	876
Cfr13I	GGNCC	5 cut(s)	111, 112, 117, 128, 775
Cfr9I	CCCGGG	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	270, 375
CviAII	CATG	5 cut(s)	60, 232, 246, 281, 818
CviQI	GTAC	2 cut(s)	270, 375
DdeI	CTNAG	2 cut(s)	465, 891
DpnI	GATC	6 cut(s)	40, 65, 218, 279, 561, 759
DpnII	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	128, 775
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	114, 407
EcoO109I	RGGNCCY	2 cut(s)	111, 775
EcoRI	GAATTC	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	123, 195
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	5 cut(s)	63, 235, 249, 284, 821
FatI	CATG	5 cut(s)	59, 231, 245, 280, 817
FauI	CCCGC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	4 cut(s)	99, 102, 501, 767
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	99, 102, 501, 767
FspBI	CTAG	3 cut(s)	135, 263, 749
GlaI	GCGC	1 cut(s)	875
GluI	GCNGC	4 cut(s)	99, 102, 501, 767
GsuI	CTGGAG	2 cut(s)	489, 782
HaeIII	GGCC	3 cut(s)	113, 119, 650
HapII	CCGG	4 cut(s)	84, 115, 145, 151
HhaI	GCGC	1 cut(s)	876
Hin1II	CATG	5 cut(s)	63, 235, 249, 284, 821
Hin6I	GCGC	1 cut(s)	874
HinP1I	GCGC	1 cut(s)	874
HincII	GTYRAC	3 cut(s)	433, 814, 835
HindII	GTYRAC	3 cut(s)	433, 814, 835
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	6 cut(s)	75, 235, 310, 359, 625, 863
HpaII	CCGG	4 cut(s)	84, 115, 145, 151
HphI	GGTGA	2 cut(s)	595, 814
Hpy166II	GTNNAC	4 cut(s)	70, 433, 814, 835
Hpy188I	TCNGA	8 cut(s)	132, 216, 224, 240, 358, 391, 690, 870
Hpy188III	TCNNGA	9 cut(s)	36, 145, 314, 400, 409, 506, 642, 722, 761
Hpy8I	GTNNAC	4 cut(s)	70, 433, 814, 835
Hpy99I	CGWCG	4 cut(s)	28, 31, 34, 83
HpyAV	CCTTC	1 cut(s)	793
HpyCH4III	ACNGT	2 cut(s)	374, 660
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	4 cut(s)	496, 512, 554, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 98, 110, 179, 263, 497, 509
HpyF3I	CTNAG	2 cut(s)	465, 891
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	5 cut(s)	63, 235, 249, 284, 821
HspAI	GCGC	1 cut(s)	874
Kpn2I	TCCGGA	1 cut(s)	144
KpnI	GGTACC	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
LmnI	GCTCC	4 cut(s)	147, 335, 508, 763
Lsp1109I	GCAGC	2 cut(s)	512, 778
LweI	GCATC	3 cut(s)	499, 541, 861
MaeI	CTAG	3 cut(s)	135, 263, 749
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	6 cut(s)	40, 65, 218, 279, 561, 759
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
MboII	GAAGA	6 cut(s)	177, 319, 424, 560, 764, 857
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	4 cut(s)	38, 216, 559, 757
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	3 cut(s)	105, 480, 684
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	218, 230, 364, 462, 748, 814
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	5 cut(s)	486, 539, 633, 771, 807
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	4 cut(s)	84, 115, 145, 151
MspR9I	CCNGG	5 cut(s)	115, 116, 125, 152, 197
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	125, 197
MvnI	CGCG	1 cut(s)	876
MwoI	GCNNNNNNNGC	7 cut(s)	89, 98, 110, 179, 263, 497, 509
NciI	CCSGG	3 cut(s)	115, 116, 152
NdeII	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
NlaIII	CATG	5 cut(s)	63, 235, 249, 284, 821
NlaIV	GGNNCC	7 cut(s)	112, 113, 129, 149, 376, 561, 884
NmuCI	GTSAC	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 29, 405
PfeI	GAWTC	6 cut(s)	75, 235, 310, 359, 625, 863
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	100, 103, 502, 768
PpuMI	RGGWCCY	1 cut(s)	775
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	123, 195
PspGI	CCWGG	2 cut(s)	123, 195
PspN4I	GGNNCC	7 cut(s)	112, 113, 129, 149, 376, 561, 884
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	5 cut(s)	111, 112, 117, 128, 775
PspPPI	RGGWCCY	1 cut(s)	775
PsuI	RGATCY	4 cut(s)	38, 216, 559, 757
RsaI	GTAC	2 cut(s)	271, 376
RsaNI	GTAC	2 cut(s)	270, 375
SalI	GTCGAC	1 cut(s)	812
SaqAI	TTAA	5 cut(s)	486, 539, 633, 771, 807
SatI	GCNGC	4 cut(s)	99, 102, 501, 767
Sau3AI	GATC	6 cut(s)	38, 63, 216, 277, 559, 757
Sau96I	GGNCC	5 cut(s)	111, 112, 117, 128, 775
ScrFI	CCNGG	5 cut(s)	115, 116, 125, 152, 197
SduI	GDGCHC	1 cut(s)	115
SfaNI	GCATC	3 cut(s)	499, 541, 861
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	2 cut(s)	128, 775
SlaI	CTCGAG	1 cut(s)	407
SmaI	CCCGGG	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	407, 770
SmoI	CTYRAG	2 cut(s)	407, 770
SrfI	GCCCGGGC	1 cut(s)	116
Sse9I	AATT	3 cut(s)	105, 480, 684
SsiI	CCGC	4 cut(s)	92, 98, 101, 171
SspMI	CTAG	3 cut(s)	135, 263, 749
StyD4I	CCNGG	5 cut(s)	113, 114, 123, 150, 195
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	374, 660
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	5 cut(s)	313, 399, 408, 568, 813
TasI	AATT	3 cut(s)	105, 480, 684
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	2 cut(s)	101, 104
TfiI	GAWTC	6 cut(s)	75, 235, 310, 359, 625, 863
Tru1I	TTAA	5 cut(s)	486, 539, 633, 771, 807
Tru9I	TTAA	5 cut(s)	486, 539, 633, 771, 807
TscAI	CASTG	2 cut(s)	519, 529
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	500, 766
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	665, 812
TspGWI	ACGGA	2 cut(s)	87, 729
TspMI	CCCGGG	1 cut(s)	114
TspRI	CASTG	2 cut(s)	519, 529
Van91I	CCANNNNNTGG	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	128, 775
XapI	RAATTY	1 cut(s)	684
XhoI	CTCGAG	1 cut(s)	407
XmaI	CCCGGG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	813
XspI	CTAG	3 cut(s)	135, 263, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.