Rmu_sc0014753.1_g000003

3-deoxy-manno-octulosonate cytidylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014753.1
Physical Location & Seq
Forward (+)
12358 .. 15241
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014753.1_g000003.1.cds

Sequence Viewer

Length: 921 bp
atgaaccctaaagcgctttgctcttcttcttcttcttcttcttcatcctcatcattgtcatccgggtcttggaacagctccaaggtatggatcgtccacggaatcgtcgccggagtcgcaattgcggcggcgatcggcgcccgggtctacctgggcccagctaagaagttccggagccgggtcgtcggcatcatacccgcccgttttgcttcgtcgcggtttgaggggaagcctcttgttcagatcctcggaaagcccatgatccagagaacatgggagagggcaaagctggcaactacattggatcatattgttgtggcgacagatgatgagaagatagcagaatgctgtagaagttttggcgctgatgtcataatgacctcagagtcttgtgctaatggtactgagcgttgttatgaagccattcagaagcttgagaagaagtatgatgtagttgtcaatattcagggggatgagcctcttgttgaaccagagataatagatgggattgttaaagctctgcaggaagccccagatgcagtgtttagcaccgcagtcacgtctttaaaacttgaagatgcatttgatccaaatcgagtgaaatgtgtggtggataataatggttatgctatctatttttcaagggggctgattccatttaacaagtcaggcaaggccaatccacagtttccatatatgctccatctaggaattcagagctatgatacaaagtttctaaagatatatcgagagctgaagcccacccctttgcaactagaagaggatctggagcagcttaaagttcttgaaaatggttataaaatgaaggtgattaaggttgaccatgaggctcatggtgtcgacactcccgaagatgttgagaagatagaagctttaatgcgtgagctaaacatgtcgtag

Protein Analysis

306

Amino Acids

33.73

Weight (kDa)

6.26

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AasI GACNNNNNNGTC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 2 cut(s) 147, 861
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 5 cut(s) 125, 128, 198, 217, 552
AclWI GGATC 6 cut(s) 98, 238, 256, 312, 581, 792
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 403
AfeI AGCGCT 1 cut(s) 15
AfiI CCNNNNNNNGG 3 cut(s) 69, 87, 178
AflIII ACRYGT 1 cut(s) 912
AgsI TTSAA 4 cut(s) 488, 575, 642, 809
AjiI CACGTC 1 cut(s) 561
AjnI CCWGG 1 cut(s) 150
AlwI GGATC 6 cut(s) 98, 238, 256, 312, 581, 792
Ama87I CYCGRG 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 171
Aor51HI AGCGCT 1 cut(s) 15
AoxI GGCC 2 cut(s) 154, 675
ApaI GGGCCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 793
ApoI RAATTY 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 423
AspLEI GCGC 3 cut(s) 16, 140, 365
AspS9I GGNCC 2 cut(s) 154, 155
AsuC2I CCSGG 4 cut(s) 64, 142, 143, 179
AsuHPI GGTGA 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 805
BccI CCATC 2 cut(s) 497, 711
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 4 cut(s) 64, 142, 143, 179
BfaI CTAG 2 cut(s) 707, 776
BfmI CTRYAG 2 cut(s) 349, 521
BfoI RGCGCY 3 cut(s) 17, 141, 366
BisI GCNGC 3 cut(s) 126, 129, 794
BlsI GCNGC 3 cut(s) 127, 130, 795
Bme1390I CCNGG 5 cut(s) 64, 142, 143, 152, 179
BmeT110I CYCGRG 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 561
BmgT120I GGNCC 2 cut(s) 154, 155
BmiI GGNNCC 3 cut(s) 139, 156, 176
BmrFI CCNGG 5 cut(s) 64, 142, 143, 152, 179
BmsI GCATC 3 cut(s) 198, 526, 568
BpmI CTGGAG 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 4 cut(s) 64, 142, 143, 179
BsaBI GATNNNNATC 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 5 cut(s) 81, 97, 141, 151, 247
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 87, 178
Bse8I GATNNNNATC 1 cut(s) 591
BseAI TCCGGA 1 cut(s) 171
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 5 cut(s) 81, 97, 141, 151, 247
BseGI GGATG 3 cut(s) 44, 59, 478
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 69, 87, 178
BseMII CTCAG 2 cut(s) 396, 396
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 805
BseYI CCCAGC 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 156, 677
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 5 cut(s) 63, 111, 142, 172, 178
BslI CCNNNNNNNGG 3 cut(s) 69, 87, 178
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 156, 677
BsoBI CYCGRG 1 cut(s) 141
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
BspACI CCGC 5 cut(s) 125, 128, 198, 217, 552
BspANI GGCC 2 cut(s) 156, 677
BspCNI CTCAG 2 cut(s) 395, 397
BspEI TCCGGA 1 cut(s) 171
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 139, 156, 176
BspMAI CTGCAG 1 cut(s) 525
BspPI GGATC 6 cut(s) 98, 238, 256, 312, 581, 792
BspQI GCTCTTC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 81, 97, 141, 151, 247
BssMI GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 687
Bst6I CTCTTC 2 cut(s) 28, 774
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 162, 382, 405
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 44, 59, 478
BstFNI CGCG 1 cut(s) 217
BstH2I RGCGCY 3 cut(s) 17, 141, 366
BstHHI GCGC 3 cut(s) 16, 140, 365
BstKTI GATC 7 cut(s) 93, 135, 246, 264, 307, 589, 787
BstMBI GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 6 cut(s) 116, 125, 137, 206, 290, 536
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 916
BstSCI CCNGG 5 cut(s) 62, 140, 141, 150, 177
BstSFI CTRYAG 2 cut(s) 349, 521
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 805
BstX2I RGATCY 2 cut(s) 243, 784
BstYI RGATCY 2 cut(s) 243, 784
BsuRI GGCC 2 cut(s) 156, 677
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 561
BtsCI GGATG 3 cut(s) 44, 59, 478
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 3 cut(s) 16, 140, 365
Cfr13I GGNCC 2 cut(s) 154, 155
Cfr9I CCCGGG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 402
CviAII CATG 5 cut(s) 259, 273, 845, 854, 913
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 3 cut(s) 162, 382, 405
DinI GGCGCC 1 cut(s) 139
DpnI GATC 7 cut(s) 92, 134, 245, 263, 306, 588, 786
DpnII GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
DraI TTTAAA 1 cut(s) 567
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 28, 774
EarI CTCTTC 2 cut(s) 28, 774
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 158
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 5 cut(s) 262, 276, 848, 857, 916
FatI CATG 5 cut(s) 258, 272, 844, 853, 912
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 2 cut(s) 147, 861
Fnu4HI GCNGC 3 cut(s) 126, 129, 794
FokI GGATG 3 cut(s) 31, 46, 485
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 126, 129, 794
FspBI CTAG 2 cut(s) 707, 776
GlaI GCGC 3 cut(s) 15, 139, 364
GluI GCNGC 3 cut(s) 126, 129, 794
GsaI CCCAGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 809
HaeII RGCGCY 3 cut(s) 17, 141, 366
HaeIII GGCC 2 cut(s) 156, 677
HapII CCGG 5 cut(s) 63, 111, 142, 172, 178
HhaI GCGC 3 cut(s) 16, 140, 365
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 5 cut(s) 262, 276, 848, 857, 916
Hin6I GCGC 3 cut(s) 14, 138, 363
HinP1I GCGC 3 cut(s) 14, 138, 363
HincII GTYRAC 2 cut(s) 841, 862
HindII GTYRAC 2 cut(s) 841, 862
HindIII AAGCTT 2 cut(s) 431, 891
HinfI GANTC 4 cut(s) 102, 114, 386, 652
HpaII CCGG 5 cut(s) 63, 111, 142, 172, 178
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 4 cut(s) 97, 148, 841, 862
Hpy188I TCNGA 5 cut(s) 243, 251, 385, 429, 717
Hpy188III TCNNGA 6 cut(s) 172, 265, 749, 788, 806, 869
Hpy8I GTNNAC 4 cut(s) 97, 148, 841, 862
Hpy99I CGWCG 3 cut(s) 110, 188, 217
HpyAV CCTTC 1 cut(s) 820
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 4 cut(s) 523, 539, 581, 772
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 125, 137, 206, 290, 536
HpyF3I CTNAG 3 cut(s) 162, 382, 405
HpySE526I ACGT 1 cut(s) 560
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 262, 276, 848, 857, 916
HspAI GCGC 3 cut(s) 14, 138, 363
KasI GGCGCC 1 cut(s) 137
Kpn2I TCCGGA 1 cut(s) 171
Kzo9I GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 4 cut(s) 83, 174, 705, 790
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 3 cut(s) 198, 526, 568
MaeI CTAG 2 cut(s) 707, 776
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 1 cut(s) 556
MalI GATC 7 cut(s) 92, 134, 245, 263, 306, 588, 786
MboI GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 2 cut(s) 243, 784
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 2 cut(s) 120, 711
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 2 cut(s) 123, 395
MnlI CCTC 9 cut(s) 58, 217, 243, 257, 273, 391, 489, 775, 841
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 6 cut(s) 513, 566, 660, 798, 834, 896
MspI CCGG 5 cut(s) 63, 111, 142, 172, 178
MspR9I CCNGG 5 cut(s) 64, 142, 143, 152, 179
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 6 cut(s) 116, 125, 137, 206, 290, 536
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 4 cut(s) 64, 142, 143, 179
NdeII GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
NlaIII CATG 5 cut(s) 262, 276, 848, 857, 916
NlaIV GGNNCC 3 cut(s) 139, 156, 176
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 916
PciI ACATGT 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 867
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 2 cut(s) 102, 652
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 3 cut(s) 127, 130, 795
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 2 cut(s) 122, 394
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 2 cut(s) 122, 394
PscI ACATGT 1 cut(s) 912
PsiI TTATAA 1 cut(s) 819
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 139, 156, 176
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 154, 155
PstI CTGCAG 1 cut(s) 525
PsuI RGATCY 2 cut(s) 243, 784
PvuI CGATCG 1 cut(s) 135
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SalI GTCGAC 1 cut(s) 860
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 6 cut(s) 513, 566, 660, 798, 834, 896
SatI GCNGC 3 cut(s) 126, 129, 794
Sau3AI GATC 7 cut(s) 90, 132, 243, 261, 304, 586, 784
Sau96I GGNCC 2 cut(s) 154, 155
SchI GAGTC 2 cut(s) 123, 395
ScrFI CCNGG 5 cut(s) 64, 142, 143, 152, 179
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 3 cut(s) 198, 526, 568
SfcI CTRYAG 2 cut(s) 349, 521
SfoI GGCGCC 1 cut(s) 139
SmaI CCCGGG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 2 cut(s) 120, 711
SsiI CCGC 5 cut(s) 125, 128, 198, 217, 552
SspDI GGCGCC 1 cut(s) 137
SspI AATATT 1 cut(s) 463
SspMI CTAG 2 cut(s) 707, 776
StyD4I CCNGG 5 cut(s) 62, 140, 141, 150, 177
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 687
TaiI ACGT 1 cut(s) 563
TaqI TCGA 3 cut(s) 595, 748, 861
TasI AATT 2 cut(s) 120, 711
TauI GCSGC 2 cut(s) 128, 131
TfiI GAWTC 2 cut(s) 102, 652
Tru1I TTAA 6 cut(s) 513, 566, 660, 798, 834, 896
Tru9I TTAA 6 cut(s) 513, 566, 660, 798, 834, 896
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 4 cut(s) 17, 33, 432, 839
TspGWI ACGGA 1 cut(s) 114
TspMI CCCGGG 1 cut(s) 141
TspRI CASTG 1 cut(s) 546
Van91I CCANNNNNTGG 1 cut(s) 87
XapI RAATTY 1 cut(s) 711
XceI RCATGY 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmaI CCCGGG 1 cut(s) 141
XmiI GTMKAC 2 cut(s) 147, 861
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 2 cut(s) 707, 776
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.