Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Forward (+)

10827965 .. 10830943

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G183000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAACCCCATGTCGGTTTGCTCCTCCTCCTCCTCGTCGTCGTCTGGGTCTTGGAGCAGCACCAAGGCATGGATTGTCCACGGAATCGTCGCCGGAGTTGCAATTGCGGTGGCAATTGGCGCCAGGGTTTACTTGGGTCCGCCAAAGAAGTTTCGGAGCCGGGTCGTCGGCATCATCCCCGCCCGTTTCGATTCTTCACGTTTCCAGGGCAAGCCTCTCGTTCAGATCCTCGGAAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAACTGGCAACTACACTGGATCATGTTGTTGTTGCGACAGACGATGAGAAGATTCGAGAATGTTGTCGCAGTTTTGGAGCTGATGTCATAATGACCTCAGAATCCTGCAGGAATGGTACTGAGCGTTGTTCTGAAGCTATTCAAAAGCTTGAGAAGAAGTATGATATAGTTGTCAATATTCAGGGGGATGAGCCTCTTATTGAACCTGAGATAATAGATGGAATTGTTAAAGCTTTGCAGGAAGCCCCAGATGCAGTGTTTAGCACTGCGGTCACATCATTAAAACTTGAAGACGCATTTGATCCGAATCGAGTGAAATGTGTGGTTGACAATTCTGGTTATGCCATCTATTTTTCAAGGGGGTTGATTCCATTTAACAAGTCAGGCAAGGCCAATCCACAGTTTCCCTATATGCTTCATCTAGGAATTCAGAGCTATGATACAGGGTTCCTAAAAATATATCCTCAGCTTGAACCTACTCCTTTGCAACTAGAAGAGGATCTGGAGCAGCTTAAAGTCCTTGAAAATGGGTATAAGATGAAGGTGATCAAGGTTGACCATGAGGCTCATGGTGTTGACGCCCCAGAAGATGTTGAGAAGATAGAATCTCTAATGCTCCAGAGGAACTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008690 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019867 GO:0022414 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0033467 GO:0033468 GO:0034641 GO:0034654 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055086 GO:0060560 GO:0070567 GO:0071704 GO:0071840 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

301

Amino Acids

33.16

Weight (kDa)

6.02

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	69
AciI	CCGC	4 cut(s)	107, 140, 180, 536
AclWI	GGATC	5 cut(s)	220, 238, 294, 563, 774
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	120, 846
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	13, 69
AgsI	TTSAA	6 cut(s)	410, 470, 557, 624, 740, 791
AjnI	CCWGG	2 cut(s)	122, 204
AluBI	AGCT	7 cut(s)	347, 404, 415, 500, 702, 736, 778
AluI	AGCT	7 cut(s)	347, 404, 415, 500, 702, 736, 778
AlwI	GGATC	5 cut(s)	220, 238, 294, 563, 774
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	57, 775
ApoI	RAATTY	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	823
AvaII	GGWCC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	69, 787
BccI	CCATC	2 cut(s)	479, 620
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	124, 206
BclI	TGATCA	1 cut(s)	813
BcnI	CCSGG	1 cut(s)	161
BfaI	CTAG	2 cut(s)	689, 758
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	2 cut(s)	58, 776
BlsI	GCNGC	2 cut(s)	59, 777
Bme1390I	CCNGG	3 cut(s)	124, 161, 206
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	4 cut(s)	121, 138, 158, 716
BmrFI	CCNGG	3 cut(s)	124, 161, 206
BmsI	GCATC	2 cut(s)	180, 508
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	2 cut(s)	791, 869
Bpu10I	CCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	2 cut(s)	120, 846
BsaJI	CCNNGG	5 cut(s)	63, 79, 123, 205, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 69
Bse1I	ACTGG	2 cut(s)	276, 288
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	124, 206
BseDI	CCNNGG	5 cut(s)	63, 79, 123, 205, 229
BseGI	GGATG	2 cut(s)	174, 460
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	13, 69
BseMII	CTCAG	4 cut(s)	378, 378, 465, 746
BseNI	ACTGG	2 cut(s)	276, 288
BseRI	GAGGAG	4 cut(s)	13, 16, 19, 22
BseXI	GCAGC	2 cut(s)	69, 787
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	93, 160
BslI	CCNNNNNNNGG	2 cut(s)	13, 69
BsnI	GGCC	1 cut(s)	659
Bsp143I	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
BspACI	CCGC	4 cut(s)	107, 140, 180, 536
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	4 cut(s)	377, 379, 466, 745
BspLI	GGNNCC	4 cut(s)	121, 138, 158, 716
BspMAI	CTGCAG	1 cut(s)	377
BspPI	GGATC	5 cut(s)	220, 238, 294, 563, 774
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	276, 288
BssECI	CCNNGG	5 cut(s)	63, 79, 123, 205, 229
BssMI	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
BssNI	GRCGYC	2 cut(s)	120, 846
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	124, 206
Bst4CI	ACNGT	1 cut(s)	669
Bst6I	CTCTTC	1 cut(s)	756
BstACI	GRCGYC	2 cut(s)	120, 846
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	5 cut(s)	364, 387, 474, 732, 900
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	174, 460
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	6 cut(s)	228, 246, 289, 571, 769, 816
BstMBI	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 119, 272, 518
BstNI	CCWGG	2 cut(s)	124, 206
BstSCI	CCNGG	3 cut(s)	122, 159, 204
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	69, 787
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	225, 766
BstYI	RGATCY	2 cut(s)	225, 766
BsuRI	GGCC	1 cut(s)	659
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	174, 460
BtsI	GCAGTG	2 cut(s)	528, 531
BtsIMutI	CAGTG	3 cut(s)	281, 528, 531
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	2 cut(s)	569, 854
Csp6I	GTAC	1 cut(s)	384
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	7 cut(s)	10, 69, 241, 255, 290, 827, 836
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	5 cut(s)	364, 387, 474, 732, 900
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	6 cut(s)	227, 245, 288, 570, 768, 815
DpnII	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	2 cut(s)	122, 204
EcoT14I	CCWWGG	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	7 cut(s)	13, 72, 244, 258, 293, 830, 839
FatI	CATG	7 cut(s)	9, 68, 240, 254, 289, 826, 835
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	2 cut(s)	58, 776
FokI	GGATG	2 cut(s)	161, 467
Fsp4HI	GCNGC	2 cut(s)	58, 776
FspBI	CTAG	2 cut(s)	689, 758
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	58, 776
GsuI	CTGGAG	2 cut(s)	791, 869
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	2 cut(s)	93, 160
HgaI	GACGC	2 cut(s)	569, 854
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	2 cut(s)	120, 846
Hin1II	CATG	7 cut(s)	13, 72, 244, 258, 293, 830, 839
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	3 cut(s)	595, 823, 844
HindII	GTYRAC	3 cut(s)	595, 823, 844
HindIII	AAGCTT	2 cut(s)	413, 498
HinfI	GANTC	7 cut(s)	84, 191, 319, 368, 574, 634, 872
HpaII	CCGG	2 cut(s)	93, 160
HphI	GGTGA	1 cut(s)	823
Hpy166II	GTNNAC	5 cut(s)	79, 130, 595, 823, 844
Hpy188I	TCNGA	7 cut(s)	156, 225, 233, 367, 400, 573, 699
Hpy188III	TCNNGA	4 cut(s)	247, 323, 770, 886
Hpy8I	GTNNAC	5 cut(s)	79, 130, 595, 823, 844
Hpy99I	CGWCG	4 cut(s)	40, 43, 92, 170
HpyAV	CCTTC	1 cut(s)	802
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	101, 375, 505, 521, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 119, 272, 518
HpyF3I	CTNAG	5 cut(s)	364, 387, 474, 732, 900
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	2 cut(s)	120, 846
Hsp92II	CATG	7 cut(s)	13, 72, 244, 258, 293, 830, 839
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
LmnI	GCTCC	6 cut(s)	26, 54, 156, 344, 772, 888
Lsp1109I	GCAGC	2 cut(s)	69, 787
LweI	GCATC	2 cut(s)	180, 508
MaeI	CTAG	2 cut(s)	689, 758
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	6 cut(s)	227, 245, 288, 570, 768, 815
MboI	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
MboII	GAAGA	7 cut(s)	186, 328, 433, 569, 773, 866, 877
MfeI	CAATTG	2 cut(s)	102, 114
MflI	RGATCY	2 cut(s)	225, 766
MluCI	AATT	5 cut(s)	102, 114, 489, 598, 693
Mly113I	GGCGCC	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	4 cut(s)	495, 548, 642, 780
MspI	CCGG	2 cut(s)	93, 160
MspR9I	CCNGG	3 cut(s)	124, 161, 206
MunI	CAATTG	2 cut(s)	102, 114
MvaI	CCWGG	2 cut(s)	124, 206
MwoI	GCNNNNNNNGC	4 cut(s)	98, 119, 272, 518
NarI	GGCGCC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
NlaIII	CATG	7 cut(s)	13, 72, 244, 258, 293, 830, 839
NlaIV	GGNNCC	4 cut(s)	121, 138, 158, 716
NmuCI	GTSAC	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	7 cut(s)	84, 191, 319, 368, 574, 634, 872
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	59, 777
PluTI	GGCGCC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	122, 204
PspGI	CCWGG	2 cut(s)	122, 204
PspN4I	GGNNCC	4 cut(s)	121, 138, 158, 716
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	225, 766
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	495, 548, 642, 780
SatI	GCNGC	2 cut(s)	58, 776
Sau3AI	GATC	6 cut(s)	225, 243, 286, 568, 766, 813
Sau96I	GGNCC	1 cut(s)	137
SbfI	CCTGCAGG	1 cut(s)	377
ScrFI	CCNGG	3 cut(s)	124, 161, 206
SdaI	CCTGCAGG	1 cut(s)	377
SfaNI	GCATC	2 cut(s)	180, 508
SfcI	CTRYAG	1 cut(s)	373
SfoI	GGCGCC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse8387I	CCTGCAGG	1 cut(s)	377
Sse9I	AATT	5 cut(s)	102, 114, 489, 598, 693
SsiI	CCGC	4 cut(s)	107, 140, 180, 536
SspDI	GGCGCC	1 cut(s)	119
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	2 cut(s)	689, 758
StyD4I	CCNGG	3 cut(s)	122, 159, 204
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	669
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	3 cut(s)	189, 322, 577
TasI	AATT	5 cut(s)	102, 114, 489, 598, 693
TfiI	GAWTC	7 cut(s)	84, 191, 319, 368, 574, 634, 872
Tru1I	TTAA	4 cut(s)	495, 548, 642, 780
Tru9I	TTAA	4 cut(s)	495, 548, 642, 780
TscAI	CASTG	3 cut(s)	288, 528, 538
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	57, 775
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	17, 674, 821
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	3 cut(s)	288, 528, 538
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	693
XcmI	CCANNNNNNNNNTGG	2 cut(s)	130, 833
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	689, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.