Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Reverse (-)

2236184 .. 2241371

Gene Structure 5188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G047000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAGGGGCCCCTCTTCCTCATCCTCTGTCTCTGACGGCACCAACCGTTCATGGCTTGCGCAGGGACTGCTTGCCGGATCGGCTGTAGCAGCTGCGGCCGTAGCGTACACGGTGATATCCAGGCGCCGGTCCGCCAGGTTACGGAGCCACGTGCTGGGGATCATACCGGCTCGTTTCGCTTCCTCCAGATTTCCAGGCAAACCTCTGGTCCCAATCCTCGGCAAACCCATGATCCAGAGGACGTGGGAAAGGGCAAAACTTGCAACCACGCTGGACCAACTTGTTGTGGCTACGGATAATGAGAAAATAGCAGAATGCTGTTTAGGGTTTGGAGCTGATGTGATAATGACATCAGATACTTGCAGAAATGGAACTGAACGCTGCAATGAGGCCCTCCAAAAGTTCAAAAAGAAATTTGATATTGTTGTTAACATTCAGGGAGATGAGCCTCTTATAGAGCCCGAGATAATAGATGGGGTTGTCAAGGCCCTGCAAGCTGCCCCTGATGCTGTATTTAGCACTGCAGTTACTTCTTTGAAACCTGAAGATGCATCTGATCCCAATCGGGTGAAATGCGTGGTGGACAATCATGGTTATGCAATATATTTTTCGAGGGGCTTGATCCCATACAATAAGTCAGCCAAGGTCAATCCACGTTTTCCATATCTACTTCATCTTGGTATCCAGAGCTATGATGCAAAGTTCTTGAGGAAATATCCAGAGCTTGCACCTACTCCATTACAGCTGGAAGAAGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGTTATAAGATGAAGGTGATCAAGGTTGATCATGAGGCTCACGGTGTTGATACTCCAGAAGATGTAGAGAAGATAGAATCATTCATGCAGGAAAGAAATCTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

297

Amino Acids

32.64

Weight (kDa)

8.19

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
Acc16I	TGCGCA	1 cut(s)	60
AccB1I	GGYRCC	2 cut(s)	38, 123
AccB7I	CCANNNNNTGG	1 cut(s)	154
AciI	CCGC	2 cut(s)	95, 132
AclWI	GGATC	5 cut(s)	85, 167, 226, 551, 616
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	564
AcvI	CACGTG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	4 cut(s)	126, 141, 154, 218
AgsI	TTSAA	2 cut(s)	406, 538
AjiI	CACGTC	1 cut(s)	243
AjnI	CCWGG	3 cut(s)	119, 134, 193
AluBI	AGCT	7 cut(s)	92, 335, 497, 690, 724, 745, 766
AluI	AGCT	7 cut(s)	92, 335, 497, 690, 724, 745, 766
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	5 cut(s)	85, 167, 226, 551, 616
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	7, 96, 390, 486
ApaI	GGGCCC	1 cut(s)	11
ApeKI	GCWGC	5 cut(s)	89, 92, 381, 497, 763
ApoI	RAATTY	1 cut(s)	413
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	2 cut(s)	61, 126
AspS9I	GGNCC	7 cut(s)	7, 8, 129, 208, 274, 391, 487
AsuHPI	GGTGA	3 cut(s)	124, 580, 811
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	3 cut(s)	129, 208, 274
BaeGI	GKGCMC	1 cut(s)	11
BanI	GGYRCC	2 cut(s)	38, 123
BanII	GRGCYC	2 cut(s)	11, 462
BbrPI	CACGTG	1 cut(s)	151
BbvI	GCAGC	5 cut(s)	79, 101, 368, 484, 775
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	52, 83
BciT130I	CCWGG	3 cut(s)	121, 136, 195
BciVI	GTATCC	1 cut(s)	692
BclI	TGATCA	2 cut(s)	801, 811
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	889
BfmI	CTRYAG	2 cut(s)	84, 522
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	692
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	6 cut(s)	90, 93, 96, 382, 498, 764
BlsI	GCNGC	6 cut(s)	91, 94, 97, 383, 499, 765
Bme1390I	CCNGG	3 cut(s)	121, 136, 195
Bme18I	GGWCC	3 cut(s)	129, 208, 274
BmeT110I	CYCGRG	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	7 cut(s)	7, 8, 129, 208, 274, 391, 487
BmiI	GGNNCC	7 cut(s)	8, 9, 10, 40, 125, 146, 210
BmrFI	CCNGG	3 cut(s)	121, 136, 195
BmsI	GCATC	4 cut(s)	496, 538, 560, 685
BpmI	CTGGAG	2 cut(s)	169, 822
BpuEI	CTTGAG	2 cut(s)	727, 797
BsaAI	YACGTR	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	217, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 141, 154, 218
Bse118I	RCCGGY	2 cut(s)	126, 166
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	3 cut(s)	121, 136, 195
BseDI	CCNNGG	2 cut(s)	217, 642
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	4 cut(s)	126, 141, 154, 218
BseMI	GCAATG	1 cut(s)	391
BseSI	GKGCMC	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	79, 101, 368, 484, 775
BseYI	CCCAGC	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	9, 98, 392, 488
BshNI	GGYRCC	2 cut(s)	38, 123
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	75, 127, 167
BslFI	GGGAC	2 cut(s)	78, 194
BslI	CCNNNNNNNGG	4 cut(s)	126, 141, 154, 218
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	78, 194
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	9, 98, 392, 488
BsoBI	CYCGRG	1 cut(s)	461
Bsp120I	GGGCCC	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	11, 462
Bsp143I	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
BspACI	CCGC	2 cut(s)	95, 132
BspANI	GGCC	4 cut(s)	9, 98, 392, 488
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	7 cut(s)	8, 9, 10, 40, 125, 146, 210
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	5 cut(s)	85, 167, 226, 551, 616
BspT107I	GGYRCC	2 cut(s)	38, 123
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	2 cut(s)	126, 166
BssAI	RCCGGY	2 cut(s)	126, 166
BssECI	CCNNGG	2 cut(s)	217, 642
BssMI	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
BssNI	GRCGYC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	121, 136, 195
Bst4CI	ACNGT	3 cut(s)	47, 112, 827
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	124
BstAPI	GCANNNNNTGC	2 cut(s)	67, 260
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	4 cut(s)	57, 72, 495, 726
BstF5I	GGATG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	61, 126
BstKTI	GATC	7 cut(s)	80, 162, 234, 559, 624, 804, 814
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 80, 89, 95, 101, 176, 260, 494, 506
BstNI	CCWGG	3 cut(s)	121, 136, 195
BstSCI	CCNGG	3 cut(s)	119, 134, 193
BstSFI	CTRYAG	2 cut(s)	84, 522
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	5 cut(s)	79, 101, 368, 484, 775
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	4 cut(s)	9, 98, 392, 488
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	4 cut(s)	57, 72, 495, 726
CaiI	CAGNNNCTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	2 cut(s)	61, 126
Cfr10I	RCCGGY	2 cut(s)	126, 166
Cfr13I	GGNCC	7 cut(s)	7, 8, 129, 208, 274, 391, 487
CpoI	CGGWCCG	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	106
CspI	CGGWCCG	1 cut(s)	129
CviAII	CATG	5 cut(s)	51, 229, 590, 815, 868
CviQI	GTAC	1 cut(s)	106
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	7 cut(s)	79, 161, 233, 558, 623, 803, 813
DpnII	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	642
Eco24I	GRGCYC	2 cut(s)	11, 462
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	129, 208, 274
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	564
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	461
EcoO109I	RGGNCCY	4 cut(s)	7, 8, 391, 487
EcoRII	CCWGG	3 cut(s)	119, 134, 193
EcoRV	GATATC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	2 cut(s)	11, 462
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	5 cut(s)	54, 232, 593, 818, 871
FaqI	GGGAC	2 cut(s)	78, 194
FatI	CATG	5 cut(s)	50, 228, 589, 814, 867
FbaI	TGATCA	2 cut(s)	801, 811
Fnu4HI	GCNGC	6 cut(s)	90, 93, 96, 382, 498, 764
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	2 cut(s)	11, 462
Fsp4HI	GCNGC	6 cut(s)	90, 93, 96, 382, 498, 764
FspBI	CTAG	1 cut(s)	889
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	2 cut(s)	60, 125
GluI	GCNGC	6 cut(s)	90, 93, 96, 382, 498, 764
GsaI	CCCAGC	1 cut(s)	158
GsuI	CTGGAG	2 cut(s)	169, 822
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	4 cut(s)	9, 98, 392, 488
HapII	CCGG	3 cut(s)	75, 127, 167
HhaI	GCGC	2 cut(s)	61, 126
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	5 cut(s)	54, 232, 593, 818, 871
Hin6I	GCGC	2 cut(s)	59, 124
HinP1I	GCGC	2 cut(s)	59, 124
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	860
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	75, 127, 167
HphI	GGTGA	3 cut(s)	124, 580, 811
Hpy166II	GTNNAC	3 cut(s)	108, 430, 583
Hpy188I	TCNGA	3 cut(s)	34, 355, 556
Hpy188III	TCNNGA	7 cut(s)	186, 235, 685, 706, 719, 815, 839
Hpy8I	GTNNAC	3 cut(s)	108, 430, 583
HpyAV	CCTTC	1 cut(s)	790
HpyCH4III	ACNGT	3 cut(s)	47, 112, 827
HpyCH4IV	ACGT	3 cut(s)	150, 242, 655
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 80, 89, 95, 101, 176, 260, 494, 506
HpySE526I	ACGT	3 cut(s)	150, 242, 655
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	54, 232, 593, 818, 871
HspAI	GCGC	2 cut(s)	59, 124
KasI	GGCGCC	1 cut(s)	123
Ksp22I	TGATCA	2 cut(s)	801, 811
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
LmnI	GCTCC	3 cut(s)	144, 332, 760
Lsp1109I	GCAGC	5 cut(s)	79, 101, 368, 484, 775
LweI	GCATC	4 cut(s)	496, 538, 560, 685
MaeI	CTAG	1 cut(s)	889
MaeII	ACGT	3 cut(s)	150, 242, 655
MaeIII	GTNAC	2 cut(s)	138, 526
MalI	GATC	7 cut(s)	79, 161, 233, 558, 623, 803, 813
MboI	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
MboII	GAAGA	6 cut(s)	6, 557, 761, 764, 854, 865
MhlI	GDGCHC	2 cut(s)	11, 462
MluCI	AATT	1 cut(s)	413
Mly113I	GGCGCC	1 cut(s)	124
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	2 cut(s)	429, 768
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	2 cut(s)	92, 745
MspI	CCGG	3 cut(s)	75, 127, 167
MspR9I	CCNGG	3 cut(s)	121, 136, 195
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	3 cut(s)	121, 136, 195
MwoI	GCNNNNNNNGC	9 cut(s)	67, 80, 89, 95, 101, 176, 260, 494, 506
NarI	GGCGCC	1 cut(s)	124
NdeII	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
NlaIII	CATG	5 cut(s)	54, 232, 593, 818, 871
NlaIV	GGNNCC	7 cut(s)	8, 9, 10, 40, 125, 146, 210
NmeAIII	GCCGAG	1 cut(s)	198
NsbI	TGCGCA	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	553
PagI	TCATGA	1 cut(s)	814
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	860
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	6 cut(s)	91, 94, 97, 383, 499, 765
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	119, 134, 193
PspCI	CACGTG	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	3 cut(s)	119, 134, 193
PspN4I	GGNNCC	7 cut(s)	8, 9, 10, 40, 125, 146, 210
PspOMI	GGGCCC	1 cut(s)	7
PspPI	GGNCC	7 cut(s)	7, 8, 129, 208, 274, 391, 487
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	67
PvuII	CAGCTG	2 cut(s)	92, 745
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	594
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	429, 768
SatI	GCNGC	6 cut(s)	90, 93, 96, 382, 498, 764
Sau3AI	GATC	7 cut(s)	77, 159, 231, 556, 621, 801, 811
Sau96I	GGNCC	7 cut(s)	7, 8, 129, 208, 274, 391, 487
ScrFI	CCNGG	3 cut(s)	121, 136, 195
SduI	GDGCHC	2 cut(s)	11, 462
SfaNI	GCATC	4 cut(s)	496, 538, 560, 685
SfcI	CTRYAG	2 cut(s)	84, 522
SfoI	GGCGCC	1 cut(s)	125
SinI	GGWCC	3 cut(s)	129, 208, 274
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	706, 776
SmoI	CTYRAG	2 cut(s)	706, 776
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	2 cut(s)	95, 132
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	119, 134, 193
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	3 cut(s)	47, 112, 827
TaiI	ACGT	3 cut(s)	153, 245, 658
TaqI	TCGA	1 cut(s)	611
TasI	AATT	1 cut(s)	413
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	2 cut(s)	429, 768
Tru9I	TTAA	2 cut(s)	429, 768
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	5 cut(s)	89, 92, 381, 497, 763
TspDTI	ATGAA	4 cut(s)	39, 662, 809, 856
TspGWI	ACGGA	2 cut(s)	157, 308
TspRI	CASTG	1 cut(s)	526
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	3 cut(s)	129, 208, 274
XapI	RAATTY	1 cut(s)	413
XspI	CTAG	1 cut(s)	889
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.